Strain Fitness in Pseudomonas simiae WCS417 around PS417_07645

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,685,402	+		PS417_07640	0.67	+1.5
1,685,640	-		PS417_07640	0.83	+0.8
1,685,649	-		PS417_07640	0.84	+0.1
1,685,788	-				-1.9
1,685,792	+				-0.4
1,685,885	+				+1.5
1,685,885	+				+0.4
1,685,917	+				+1.7
1,685,935	-				+1.1
1,686,003	+				+0.3
1,686,004	-				+0.6
1,686,258	+		PS417_07645	0.33	+0.7
1,686,258	+		PS417_07645	0.33	-0.1
1,686,258	+		PS417_07645	0.33	-2.2
1,686,259	-		PS417_07645	0.33	-0.1
1,686,333	+		PS417_07645	0.47	-1.9
1,686,333	+				-1.4
1,686,334	-		PS417_07645	0.47	-2.5
1,686,334	-		PS417_07645	0.47	-1.2
1,686,377	+		PS417_07645	0.55	-1.1
1,686,377	+		PS417_07645	0.55	-0.1
1,686,377	+		PS417_07645	0.55	-1.4
1,686,378	-		PS417_07645	0.55	-1.4
1,686,378	-		PS417_07645	0.55	-2.2
1,686,378	-		PS417_07645	0.55	+0.2
1,686,381	-		PS417_07645	0.56	+0.5
1,686,446	+		PS417_07645	0.68	+0.7
1,686,446	+		PS417_07645	0.68	-2.8
1,686,447	-		PS417_07645	0.68	+0.9
1,686,447	-		PS417_07645	0.68	-2.0
1,686,480	-		PS417_07645	0.75	-1.1
1,686,480	-		PS417_07645	0.75	-0.3
1,686,590	-				-0.5
1,686,590	-				-2.4
1,686,592	+				-0.0
1,686,615	+				-0.7
1,686,616	-				-0.7
1,686,631	-				-0.3
1,686,631	-				-0.1
1,686,651	+				-0.0
1,686,673	+				+0.6
1,686,694	-				+0.3
1,686,711	+				+0.4
1,686,733	+				-1.7
1,686,733	+				-0.2
1,686,733	+				-0.0
1,686,733	+				-0.3
1,686,735	+				+0.1
1,686,735	+				+1.1
1,686,735	+				+0.3
1,686,736	-				+1.0
1,686,736	-				+1.7
1,686,736	-				-0.4
1,686,736	-				-1.6
1,686,737	+				+1.7
1,686,737	+				-0.3
1,686,738	-				-0.2
1,686,738	-				-0.1
1,686,738	-				-1.1
1,686,738	-				+0.8
1,686,738	-				+1.1