Strain Fitness in Pseudomonas simiae WCS417 around PS417_06935

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,534,409	-		PS417_06930	0.61	-1.1
1,534,441	+		PS417_06930	0.64	-1.3
1,534,441	+		PS417_06930	0.64	+1.3
1,534,442	-		PS417_06930	0.64	-0.4
1,534,442	-		PS417_06930	0.64	-0.2
1,534,623	+		PS417_06930	0.79	+0.3
1,534,628	-		PS417_06930	0.80	+1.2
1,534,879	-				+0.0
1,535,101	-		PS417_06935	0.25	-1.4
1,535,101	-		PS417_06935	0.25	+0.4
1,535,697	-		PS417_06935	0.88	-0.3
1,535,697	-		PS417_06935	0.88	-2.7
1,535,697	-		PS417_06935	0.88	-1.5
1,535,697	-		PS417_06935	0.88	-1.9
1,535,697	-		PS417_06935	0.88	+0.2
1,535,875	+				-1.4
1,535,876	-				+1.0
1,535,876	-				+0.3
1,535,878	+				+2.8
1,535,878	+				-0.9
1,535,878	+				-1.1
1,535,879	-				-0.1
1,535,879	-				-0.1
1,535,879	-				+0.9
1,535,978	+				+0.9
1,535,979	-				+0.1
1,535,979	-				+0.3
1,536,095	+		PS417_06940	0.17	-2.3
1,536,096	-		PS417_06940	0.17	+2.3
1,536,096	-		PS417_06940	0.17	-1.1
1,536,131	+		PS417_06940	0.20	+0.6
1,536,131	+		PS417_06940	0.20	+2.4
1,536,131	+		PS417_06940	0.20	-0.5
1,536,131	+		PS417_06940	0.20	-0.4
1,536,132	-		PS417_06940	0.20	-2.9
1,536,132	-		PS417_06940	0.20	+0.2
1,536,132	-		PS417_06940	0.20	-0.4
1,536,227	+		PS417_06940	0.27	-0.8
1,536,228	-		PS417_06940	0.27	+1.0
1,536,228	-		PS417_06940	0.27	+0.1
1,536,284	+		PS417_06940	0.31	-1.8
1,536,285	-		PS417_06940	0.31	-2.0
1,536,288	-		PS417_06940	0.32	+1.0
1,536,616	+		PS417_06940	0.56	+1.2
1,536,647	+		PS417_06940	0.59	+0.2
1,536,647	+		PS417_06940	0.59	+0.1
1,536,647	+		PS417_06940	0.59	-0.0
1,536,648	-		PS417_06940	0.59	-3.3
1,536,648	-		PS417_06940	0.59	-0.1
1,536,648	-		PS417_06940	0.59	-1.4
1,536,672	-		PS417_06940	0.60	+0.1
1,536,758	+		PS417_06940	0.67	+0.9
1,536,758	+		PS417_06940	0.67	+0.2
1,536,758	+		PS417_06940	0.67	+0.4
1,536,758	+		PS417_06940	0.67	+0.1
1,536,759	-		PS417_06940	0.67	-0.8
1,536,759	-		PS417_06940	0.67	+0.2
1,536,759	-		PS417_06940	0.67	-4.2