Strain Fitness in Pseudomonas simiae WCS417 around PS417_06665

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
1,476,939	+		PS417_06655	0.69	+0.3
1,476,939	+		PS417_06655	0.69	-1.1
1,476,939	+		PS417_06655	0.69	-0.2
1,476,940	-		PS417_06655	0.69	-0.6
1,476,995	+		PS417_06655	0.73	+0.7
1,476,995	+		PS417_06655	0.73	+0.2
1,477,626	+		PS417_06660	0.68	-2.4
1,477,626	+		PS417_06660	0.68	-0.1
1,477,643	+		PS417_06660	0.71	+0.2
1,477,643	+		PS417_06660	0.71	-0.8
1,477,644	-		PS417_06660	0.72	-3.5
1,477,644	-		PS417_06660	0.72	-0.2
1,477,701	+		PS417_06660	0.84	+0.3
1,477,701	+		PS417_06660	0.84	+1.0
1,477,701	+		PS417_06660	0.84	+4.0
1,477,701	+		PS417_06660	0.84	-0.8
1,477,701	+		PS417_06660	0.84	-1.0
1,477,702	-		PS417_06660	0.84	+1.2
1,477,856	+				+1.2
1,478,050	+		PS417_06665	0.21	+0.1
1,478,088	+		PS417_06665	0.25	-1.4
1,478,089	-		PS417_06665	0.25	+0.6
1,478,089	-		PS417_06665	0.25	-1.6
1,478,133	+		PS417_06665	0.31	+0.5
1,478,183	+		PS417_06665	0.36	+0.3
1,478,184	-		PS417_06665	0.36	-1.9
1,478,186	+		PS417_06665	0.37	-0.3
1,478,186	+		PS417_06665	0.37	-1.8
1,478,215	+		PS417_06665	0.40	+0.0
1,478,215	+		PS417_06665	0.40	-0.3
1,478,215	+		PS417_06665	0.40	-0.0
1,478,338	+		PS417_06665	0.54	-0.1
1,478,338	+		PS417_06665	0.54	-0.1
1,478,339	-		PS417_06665	0.54	+2.2
1,478,379	-		PS417_06665	0.59	+0.6
1,478,520	+		PS417_06665	0.75	-0.7
1,478,520	+		PS417_06665	0.75	-0.4
1,478,520	+		PS417_06665	0.75	+0.4
1,478,520	+		PS417_06665	0.75	-1.0
1,478,521	-		PS417_06665	0.75	-1.4
1,478,521	-		PS417_06665	0.75	-0.6
1,478,521	-		PS417_06665	0.75	-1.1
1,478,524	-		PS417_06665	0.76	-1.5
1,478,524	-		PS417_06665	0.76	-0.4
1,478,832	-				-0.8
1,478,855	+				-0.3
1,478,855	+				-0.1
1,478,856	-				-1.0
1,479,058	+				+0.2
1,479,133	+				-1.1
1,479,211	+		PS417_06675	0.34	-0.6
1,479,212	-		PS417_06675	0.35	+0.7
1,479,212	-		PS417_06675	0.35	-2.4
1,479,236	-		PS417_06675	0.56	-0.4
1,479,251	+		PS417_06675	0.68	+0.0
1,479,275	+		PS417_06675	0.89	+1.3
1,479,285	+				-0.5
1,479,285	+				+0.5
1,479,300	+				+0.2
1,479,300	+				+1.3
1,479,300	+				+0.2
1,479,300	+				-0.7
1,479,374	+				+2.0
1,479,375	-				+1.8
1,479,388	+				+0.6
1,479,388	+				-0.6
1,479,388	+				-1.3
1,479,389	-				-0.4
1,479,389	-				+0.1
1,479,396	+				+1.0
1,479,396	+				+1.5
1,479,396	+				+0.2
1,479,396	+				-1.4
1,479,396	+				-2.1
1,479,397	-				-2.0
1,479,404	+				+0.3
1,479,579	-				-0.3
1,479,703	+		PS417_06680	0.17	-0.1
1,479,703	+		PS417_06680	0.17	-0.9
1,479,703	+		PS417_06680	0.17	-0.3
1,479,703	+		PS417_06680	0.17	-0.3
1,479,704	-		PS417_06680	0.17	+0.1
1,479,704	-		PS417_06680	0.17	-0.1
1,479,704	-		PS417_06680	0.17	+1.7
1,479,704	-		PS417_06680	0.17	-0.9