Experiment: Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06630 and PS417_06635 are separated by 140 nucleotides PS417_06635 and PS417_06640 are separated by 251 nucleotides
PS417_06630: PS417_06630 - diguanylate phosphodiesterase, at 1,468,176 to 1,470,440
_06630
PS417_06635: PS417_06635 - ferredoxin, at 1,470,581 to 1,470,946
_06635
PS417_06640: PS417_06640 - MFS transporter, at 1,471,198 to 1,472,544
_06640
Position (kb)
1470
1471 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1469.858 kb on - strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1470.016 kb on + strand, within PS417_06630 at 1470.016 kb on + strand at 1470.017 kb on - strand, within PS417_06630 at 1470.017 kb on - strand, within PS417_06630 at 1470.017 kb on - strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.065 kb on - strand, within PS417_06630 at 1470.343 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.388 kb on - strand at 1470.440 kb on + strand at 1470.440 kb on + strand at 1470.441 kb on - strand at 1470.441 kb on - strand at 1470.455 kb on + strand at 1470.500 kb on + strand at 1470.582 kb on + strand at 1470.583 kb on - strand at 1470.583 kb on - strand at 1470.726 kb on + strand at 1470.726 kb on + strand, within PS417_06635 at 1470.727 kb on - strand, within PS417_06635 at 1471.001 kb on + strand at 1471.001 kb on + strand at 1471.039 kb on + strand at 1471.041 kb on + strand at 1471.041 kb on + strand at 1471.041 kb on + strand at 1471.087 kb on - strand at 1471.130 kb on + strand at 1471.130 kb on + strand at 1471.130 kb on + strand at 1471.131 kb on - strand at 1471.131 kb on - strand at 1471.182 kb on + strand at 1471.182 kb on + strand at 1471.183 kb on - strand at 1471.546 kb on + strand, within PS417_06640 at 1471.660 kb on - strand, within PS417_06640 at 1471.710 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.754 kb on - strand, within PS417_06640 at 1471.894 kb on + strand, within PS417_06640 at 1471.895 kb on - strand, within PS417_06640 at 1471.933 kb on + strand, within PS417_06640 at 1471.934 kb on - strand, within PS417_06640
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.001 mg/ml remove 1,469,858 - PS417_06630 0.74 -1.1 1,469,977 + PS417_06630 0.80 +0.7 1,469,977 + PS417_06630 0.80 -0.6 1,469,977 + PS417_06630 0.80 -1.0 1,470,016 + PS417_06630 0.81 +0.5 1,470,016 + +0.2 1,470,017 - PS417_06630 0.81 -0.1 1,470,017 - PS417_06630 0.81 +0.4 1,470,017 - PS417_06630 0.81 +0.7 1,470,064 + PS417_06630 0.83 -0.6 1,470,064 + PS417_06630 0.83 -0.3 1,470,064 + PS417_06630 0.83 -0.3 1,470,064 + PS417_06630 0.83 -0.1 1,470,064 + PS417_06630 0.83 +0.6 1,470,065 - PS417_06630 0.83 +0.2 1,470,343 + +0.2 1,470,387 + -0.8 1,470,387 + +0.1 1,470,387 + -2.0 1,470,387 + -0.3 1,470,387 + -0.8 1,470,388 - -0.8 1,470,440 + +0.9 1,470,440 + -0.4 1,470,441 - +1.2 1,470,441 - +1.6 1,470,455 + +0.0 1,470,500 + -0.1 1,470,582 + +0.3 1,470,583 - -1.1 1,470,583 - +0.2 1,470,726 + +1.2 1,470,726 + PS417_06635 0.40 -3.8 1,470,727 - PS417_06635 0.40 -0.3 1,471,001 + -1.8 1,471,001 + -1.1 1,471,039 + -0.2 1,471,041 + -1.1 1,471,041 + +0.3 1,471,041 + +1.4 1,471,087 - -1.6 1,471,130 + +0.0 1,471,130 + +1.2 1,471,130 + -0.4 1,471,131 - -0.0 1,471,131 - -0.7 1,471,182 + +0.6 1,471,182 + +0.5 1,471,183 - -1.1 1,471,546 + PS417_06640 0.26 -0.4 1,471,660 - PS417_06640 0.34 +1.2 1,471,710 + PS417_06640 0.38 +0.2 1,471,753 + PS417_06640 0.41 -0.7 1,471,753 + PS417_06640 0.41 -0.5 1,471,753 + PS417_06640 0.41 -0.0 1,471,754 - PS417_06640 0.41 -0.8 1,471,894 + PS417_06640 0.52 +0.3 1,471,895 - PS417_06640 0.52 -0.6 1,471,933 + PS417_06640 0.55 +0.8 1,471,934 - PS417_06640 0.55 -0.8
Or see this region's nucleotide sequence