Strain Fitness in Pseudomonas simiae WCS417 around PS417_00560

Experiment: Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.001 mg/ml
111,015	+		PS417_00555	0.64	+0.4
111,015	+		PS417_00555	0.64	+3.2
111,015	+		PS417_00555	0.64	+0.2
111,015	+		PS417_00555	0.64	-1.2
111,015	+		PS417_00555	0.64	-1.2
111,015	+		PS417_00555	0.64	+0.4
111,015	+		PS417_00555	0.64	+1.7
111,016	-		PS417_00555	0.64	+0.6
111,016	-		PS417_00555	0.64	+1.6
111,016	-		PS417_00555	0.64	+0.3
111,110	+		PS417_00555	0.70	-0.5
111,125	+		PS417_00555	0.71	-2.3
111,308	+		PS417_00555	0.84	-0.1
111,335	+		PS417_00555	0.86	+0.5
111,336	-		PS417_00555	0.86	+1.5
111,546	+				+0.6
111,547	-				-0.2
111,558	+				-0.3
111,558	+				+1.0
111,618	-				-0.3
111,759	+				+2.4
111,759	+				+0.6
111,803	+				+1.6
111,804	-				+1.0
111,804	-				+0.6
112,097	+		PS417_00560	0.26	-2.1
112,225	-		PS417_00560	0.34	-0.6
112,318	+		PS417_00560	0.41	-0.9
112,318	+		PS417_00560	0.41	-0.9
112,318	+		PS417_00560	0.41	-1.1
112,318	+		PS417_00560	0.41	-2.5
112,319	-		PS417_00560	0.41	+0.1
112,319	-		PS417_00560	0.41	+0.1
112,323	+		PS417_00560	0.41	-1.5
112,328	+		PS417_00560	0.42	+0.2
112,359	-		PS417_00560	0.44	-0.2
112,359	-		PS417_00560	0.44	-0.3
112,359	-		PS417_00560	0.44	+0.3
112,385	-		PS417_00560	0.46	-1.4
112,457	+		PS417_00560	0.51	-0.1
112,457	+		PS417_00560	0.51	-0.1
112,457	+		PS417_00560	0.51	+0.1
112,457	+		PS417_00560	0.51	-0.4
112,610	-		PS417_00560	0.61	+0.1
112,621	+		PS417_00560	0.62	+0.2
112,622	-		PS417_00560	0.62	+1.0
112,682	+		PS417_00560	0.66	+0.2
112,682	+		PS417_00560	0.66	+0.1
112,683	-		PS417_00560	0.66	+0.3
112,698	+		PS417_00560	0.67	+0.4
112,913	-		PS417_00560	0.82	-0.7
112,970	+		PS417_00560	0.86	-0.4
112,970	+		PS417_00560	0.86	+0.2
112,971	-		PS417_00560	0.86	+0.6
112,971	-		PS417_00560	0.86	-0.4
113,007	+		PS417_00560	0.89	-0.4
113,008	-		PS417_00560	0.89	-3.3
113,008	-		PS417_00560	0.89	+0.3
113,009	+		PS417_00560	0.89	-1.5
113,009	+		PS417_00560	0.89	-0.2
113,010	-		PS417_00560	0.89	-0.1
113,028	+				+0.2
113,138	+				+0.6
113,167	+				-0.5
113,167	+				+1.6
113,167	+				-0.1
113,168	-				+0.5
113,168	-				+0.1
113,171	+				+0.3
113,172	-				+0.4
113,428	+		PS417_00565	0.82	+0.9
113,428	+		PS417_00565	0.82	-0.1
113,429	-		PS417_00565	0.82	-0.6
113,429	-		PS417_00565	0.82	+0.0
113,429	-		PS417_00565	0.82	+0.3
113,459	-				+1.1
113,459	-				+0.9
113,459	-				-0.6
113,459	-				-0.6
113,459	-				-1.1
113,474	+				-1.6
113,475	-				-0.6
113,635	+		PS417_00570	0.12	+0.2
113,936	-		PS417_00570	0.39	+0.5