Strain Fitness in Pseudomonas simiae WCS417 around PS417_03420

Experiment: Polymyxin B sulfate 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03415 and PS417_03420 are separated by 180 nucleotidesPS417_03420 and PS417_03430 are separated by 576 nucleotides PS417_03415: PS417_03415 - isomerase, at 783,685 to 784,464 _03415 PS417_03420: PS417_03420 - hypothetical protein, at 784,645 to 788,943 _03420 PS417_03430: PS417_03430 - methyltransferase type 11, at 789,520 to 790,326 _03430 Position (kb) 784 785 786 787 788 789Strain fitness (log2 ratio) -2 -1 0 1at 783.710 kb on + strandat 783.711 kb on - strandat 783.846 kb on + strand, within PS417_03415at 783.847 kb on - strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.028 kb on + strand, within PS417_03415at 784.320 kb on - strand, within PS417_03415at 784.452 kb on + strandat 784.481 kb on - strandat 784.481 kb on - strandat 784.499 kb on + strandat 784.500 kb on - strandat 784.500 kb on - strandat 784.608 kb on + strandat 784.608 kb on + strandat 784.609 kb on - strandat 784.638 kb on + strandat 784.744 kb on + strandat 784.867 kb on + strandat 784.868 kb on - strandat 784.868 kb on - strandat 784.902 kb on + strandat 784.903 kb on - strandat 785.239 kb on - strand, within PS417_03420at 785.598 kb on - strand, within PS417_03420at 785.821 kb on + strand, within PS417_03420at 785.821 kb on + strand, within PS417_03420at 785.821 kb on + strand, within PS417_03420at 785.821 kb on + strand, within PS417_03420at 785.821 kb on + strand, within PS417_03420at 785.822 kb on - strand, within PS417_03420at 785.822 kb on - strand, within PS417_03420at 786.127 kb on + strand, within PS417_03420at 786.136 kb on - strand, within PS417_03420at 786.183 kb on + strand, within PS417_03420at 786.264 kb on + strand, within PS417_03420at 786.390 kb on + strand, within PS417_03420at 786.589 kb on + strand, within PS417_03420at 786.590 kb on - strand, within PS417_03420at 786.590 kb on - strand, within PS417_03420at 786.590 kb on - strand, within PS417_03420at 786.860 kb on - strand, within PS417_03420at 787.068 kb on + strand, within PS417_03420at 787.204 kb on + strand, within PS417_03420at 787.204 kb on + strand, within PS417_03420at 787.205 kb on - strand, within PS417_03420at 787.205 kb on - strand, within PS417_03420at 787.329 kb on - strand, within PS417_03420at 787.455 kb on + strand, within PS417_03420at 787.467 kb on - strand, within PS417_03420at 787.467 kb on - strand, within PS417_03420at 787.470 kb on + strand, within PS417_03420at 787.559 kb on + strand, within PS417_03420at 787.560 kb on - strand, within PS417_03420at 787.718 kb on - strand, within PS417_03420at 787.755 kb on + strandat 787.755 kb on + strand, within PS417_03420at 787.817 kb on - strand, within PS417_03420at 787.856 kb on + strand, within PS417_03420at 787.856 kb on + strand, within PS417_03420at 787.857 kb on - strand, within PS417_03420at 787.857 kb on - strand, within PS417_03420at 788.195 kb on - strand, within PS417_03420at 788.195 kb on - strand, within PS417_03420at 788.448 kb on + strand, within PS417_03420at 788.449 kb on - strand, within PS417_03420at 788.704 kb on + strandat 788.704 kb on + strandat 788.704 kb on + strandat 788.705 kb on - strandat 788.705 kb on - strandat 788.815 kb on + strandat 788.947 kb on + strandat 788.947 kb on + strandat 789.058 kb on - strandat 789.058 kb on - strandat 789.138 kb on + strandat 789.199 kb on + strandat 789.199 kb on + strandat 789.631 kb on + strand, within PS417_03430at 789.632 kb on - strand, within PS417_03430at 789.669 kb on + strand, within PS417_03430at 789.670 kb on - strand, within PS417_03430

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.006 mg/ml
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783,710 + -0.5
783,711 - +0.4
783,846 + PS417_03415 0.21 +1.5
783,847 - PS417_03415 0.21 +0.0
784,028 + PS417_03415 0.44 +0.2
784,028 + PS417_03415 0.44 -0.1
784,028 + PS417_03415 0.44 +0.3
784,320 - PS417_03415 0.81 -0.4
784,452 + -0.4
784,481 - +1.0
784,481 - -0.2
784,499 + +0.5
784,500 - -0.4
784,500 - +0.1
784,608 + -0.1
784,608 + -0.5
784,609 - +1.0
784,638 + -0.3
784,744 + -0.3
784,867 + +0.9
784,868 - +0.1
784,868 - -0.4
784,902 + -0.6
784,903 - -0.1
785,239 - PS417_03420 0.14 +0.3
785,598 - PS417_03420 0.22 -0.6
785,821 + PS417_03420 0.27 +1.5
785,821 + PS417_03420 0.27 +0.6
785,821 + PS417_03420 0.27 +1.0
785,821 + PS417_03420 0.27 +0.3
785,821 + PS417_03420 0.27 -0.8
785,822 - PS417_03420 0.27 +1.3
785,822 - PS417_03420 0.27 +0.0
786,127 + PS417_03420 0.34 -0.1
786,136 - PS417_03420 0.35 +0.2
786,183 + PS417_03420 0.36 +0.2
786,264 + PS417_03420 0.38 +0.3
786,390 + PS417_03420 0.41 -0.2
786,589 + PS417_03420 0.45 -0.0
786,590 - PS417_03420 0.45 -0.3
786,590 - PS417_03420 0.45 -0.2
786,590 - PS417_03420 0.45 -1.0
786,860 - PS417_03420 0.52 +0.1
787,068 + PS417_03420 0.56 +0.3
787,204 + PS417_03420 0.60 -0.5
787,204 + PS417_03420 0.60 +1.2
787,205 - PS417_03420 0.60 +0.7
787,205 - PS417_03420 0.60 -0.8
787,329 - PS417_03420 0.62 +0.1
787,455 + PS417_03420 0.65 +0.2
787,467 - PS417_03420 0.66 +0.0
787,467 - PS417_03420 0.66 -0.2
787,470 + PS417_03420 0.66 -1.2
787,559 + PS417_03420 0.68 -0.1
787,560 - PS417_03420 0.68 -0.9
787,718 - PS417_03420 0.71 -0.7
787,755 + -1.3
787,755 + PS417_03420 0.72 -0.1
787,817 - PS417_03420 0.74 -0.7
787,856 + PS417_03420 0.75 +0.8
787,856 + PS417_03420 0.75 +1.0
787,857 - PS417_03420 0.75 +0.0
787,857 - PS417_03420 0.75 -0.4
788,195 - PS417_03420 0.83 -1.4
788,195 - PS417_03420 0.83 -1.6
788,448 + PS417_03420 0.88 -0.5
788,449 - PS417_03420 0.88 +0.8
788,704 + -0.2
788,704 + +0.1
788,704 + -0.4
788,705 - -0.5
788,705 - +0.0
788,815 + -0.1
788,947 + -0.5
788,947 + -0.5
789,058 - +0.1
789,058 - +0.5
789,138 + -0.2
789,199 + +0.2
789,199 + +0.1
789,631 + PS417_03430 0.14 +0.2
789,632 - PS417_03430 0.14 -1.9
789,669 + PS417_03430 0.18 +0.2
789,670 - PS417_03430 0.19 -2.4

Or see this region's nucleotide sequence