Experiment: Polymyxin B sulfate 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02850 and PS417_02855 overlap by 4 nucleotides PS417_02855 and PS417_02860 are separated by 23 nucleotides PS417_02860 and PS417_02865 are separated by 152 nucleotides
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
Position (kb) 652
653
654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 651.464 kb on + strand at 651.554 kb on + strand at 651.641 kb on + strand, within PS417_02855 at 651.641 kb on + strand, within PS417_02855 at 651.678 kb on + strand, within PS417_02855 at 651.785 kb on - strand, within PS417_02855 at 651.969 kb on - strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.350 kb on + strand at 652.351 kb on - strand at 652.351 kb on - strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.411 kb on - strand at 652.425 kb on + strand at 652.425 kb on + strand at 652.426 kb on - strand at 652.512 kb on + strand at 652.736 kb on + strand, within PS417_02860 at 652.736 kb on + strand, within PS417_02860 at 652.737 kb on - strand, within PS417_02860 at 652.786 kb on + strand, within PS417_02860 at 652.916 kb on - strand, within PS417_02860 at 653.011 kb on - strand, within PS417_02860 at 653.019 kb on + strand, within PS417_02860 at 653.134 kb on - strand, within PS417_02860 at 653.168 kb on - strand, within PS417_02860 at 653.355 kb on + strand, within PS417_02860 at 653.356 kb on - strand, within PS417_02860 at 653.496 kb on + strand, within PS417_02860 at 653.496 kb on + strand, within PS417_02860 at 653.497 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.848 kb on - strand, within PS417_02860 at 653.905 kb on - strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.088 kb on - strand, within PS417_02860 at 654.106 kb on - strand, within PS417_02860 at 654.439 kb on - strand at 654.439 kb on - strand at 654.439 kb on - strand at 654.523 kb on - strand at 654.646 kb on + strand at 654.941 kb on + strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 655.329 kb on - strand, within PS417_02865
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.006 mg/ml remove 651,464 + +0.6 651,554 + +0.3 651,641 + PS417_02855 0.14 -0.8 651,641 + PS417_02855 0.14 -0.3 651,678 + PS417_02855 0.18 -0.1 651,785 - PS417_02855 0.32 -2.2 651,969 - PS417_02855 0.56 +0.1 652,145 + PS417_02855 0.78 -0.1 652,145 + PS417_02855 0.78 -1.9 652,350 + +0.1 652,351 - -1.1 652,351 - +0.2 652,410 + -0.6 652,410 + -0.2 652,410 + -0.7 652,411 - +0.6 652,425 + -0.1 652,425 + -0.1 652,426 - -1.0 652,512 + -1.8 652,736 + PS417_02860 0.19 +0.0 652,736 + PS417_02860 0.19 -0.5 652,737 - PS417_02860 0.19 -0.6 652,786 + PS417_02860 0.21 +0.2 652,916 - PS417_02860 0.27 -0.5 653,011 - PS417_02860 0.32 -0.1 653,019 + PS417_02860 0.32 -0.6 653,134 - PS417_02860 0.38 -0.3 653,168 - PS417_02860 0.39 +0.2 653,355 + PS417_02860 0.48 -0.5 653,356 - PS417_02860 0.48 +0.5 653,496 + PS417_02860 0.55 +0.0 653,496 + PS417_02860 0.55 +0.4 653,497 - PS417_02860 0.55 -0.5 653,638 - PS417_02860 0.62 +0.5 653,638 - PS417_02860 0.62 -1.1 653,848 - PS417_02860 0.72 -0.4 653,905 - PS417_02860 0.74 -1.2 654,087 + PS417_02860 0.83 -0.0 654,087 + PS417_02860 0.83 +0.1 654,088 - PS417_02860 0.83 -0.3 654,106 - PS417_02860 0.84 +0.7 654,439 - +0.8 654,439 - +0.1 654,439 - -0.5 654,523 - -0.8 654,646 + -0.2 654,941 + PS417_02865 0.25 -0.2 654,942 - PS417_02865 0.25 +0.2 654,942 - PS417_02865 0.25 -1.6 655,329 - PS417_02865 0.53 -0.2
Or see this region's nucleotide sequence