Experiment: Polymyxin B sulfate 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02610 and PS417_02615 overlap by 1 nucleotides PS417_02615 and PS417_02620 are separated by 46 nucleotides PS417_02620 and PS417_02625 are separated by 332 nucleotides
PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243
_02610
PS417_02615: PS417_02615 - transglutaminase, at 599,243 to 600,133
_02615
PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362
_02620
PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141
_02625
Position (kb)
599
600
601 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 598.278 kb on + strand, within PS417_02610 at 598.279 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.378 kb on - strand, within PS417_02610 at 598.715 kb on + strand, within PS417_02610 at 598.875 kb on + strand at 599.285 kb on + strand at 599.286 kb on - strand at 599.286 kb on - strand at 599.428 kb on + strand at 599.497 kb on - strand, within PS417_02615 at 599.579 kb on - strand, within PS417_02615 at 599.628 kb on - strand, within PS417_02615 at 599.704 kb on - strand, within PS417_02615 at 599.867 kb on + strand, within PS417_02615 at 599.867 kb on + strand at 599.868 kb on - strand, within PS417_02615 at 599.868 kb on - strand, within PS417_02615 at 599.869 kb on + strand, within PS417_02615 at 599.870 kb on - strand, within PS417_02615 at 600.072 kb on + strand at 600.347 kb on - strand at 600.347 kb on - strand at 600.350 kb on + strand at 600.350 kb on + strand at 600.351 kb on - strand at 600.351 kb on - strand at 600.375 kb on - strand at 600.424 kb on + strand at 600.467 kb on - strand at 600.539 kb on + strand at 600.553 kb on + strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.566 kb on - strand at 600.566 kb on - strand at 600.625 kb on - strand at 601.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.006 mg/ml remove 598,278 + PS417_02610 0.61 -0.5 598,279 - PS417_02610 0.61 +0.1 598,283 - PS417_02610 0.61 -0.1 598,283 - PS417_02610 0.61 -1.3 598,283 - PS417_02610 0.61 +4.4 598,378 - PS417_02610 0.65 +0.1 598,715 + PS417_02610 0.79 +0.3 598,875 + +0.1 599,285 + -0.8 599,286 - +0.2 599,286 - +1.1 599,428 + -0.9 599,497 - PS417_02615 0.29 +0.2 599,579 - PS417_02615 0.38 -0.0 599,628 - PS417_02615 0.43 +0.7 599,704 - PS417_02615 0.52 +0.7 599,867 + PS417_02615 0.70 +0.4 599,867 + -0.5 599,868 - PS417_02615 0.70 +0.3 599,868 - PS417_02615 0.70 -0.0 599,869 + PS417_02615 0.70 +1.0 599,870 - PS417_02615 0.70 +0.9 600,072 + -0.2 600,347 - +0.0 600,347 - -1.4 600,350 + +0.3 600,350 + +0.8 600,351 - -0.1 600,351 - +0.1 600,375 - +0.1 600,424 + +0.6 600,467 - +1.1 600,539 + -0.4 600,553 + -0.1 600,554 - -0.1 600,554 - +0.7 600,554 - +1.1 600,565 + -0.6 600,565 + +0.2 600,566 - -0.8 600,566 - +0.2 600,625 - -0.1 601,077 - -0.5
Or see this region's nucleotide sequence