Experiment: Polymyxin B sulfate 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11630 and PS417_11635 are separated by 179 nucleotides PS417_11635 and PS417_11640 are separated by 113 nucleotides PS417_11640 and PS417_11645 overlap by 4 nucleotides
PS417_11630: PS417_11630 - sodium:dicarboxylate symporter, at 2,501,766 to 2,503,070
_11630
PS417_11635: PS417_11635 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,503,250 to 2,504,605
_11635
PS417_11640: PS417_11640 - GntR family transcriptional regulator, at 2,504,719 to 2,505,450
_11640
PS417_11645: PS417_11645 - chemotaxis protein, at 2,505,447 to 2,507,087
_11645
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2502.283 kb on + strand, within PS417_11630 at 2502.283 kb on + strand, within PS417_11630 at 2502.283 kb on + strand, within PS417_11630 at 2502.283 kb on + strand, within PS417_11630 at 2502.283 kb on + strand, within PS417_11630 at 2502.284 kb on - strand, within PS417_11630 at 2502.324 kb on + strand, within PS417_11630 at 2502.348 kb on - strand, within PS417_11630 at 2502.591 kb on + strand, within PS417_11630 at 2502.591 kb on + strand, within PS417_11630 at 2502.649 kb on + strand, within PS417_11630 at 2502.649 kb on + strand, within PS417_11630 at 2502.649 kb on + strand, within PS417_11630 at 2502.817 kb on + strand, within PS417_11630 at 2503.039 kb on + strand at 2503.040 kb on - strand at 2503.091 kb on + strand at 2503.091 kb on + strand at 2503.105 kb on + strand at 2504.509 kb on - strand at 2504.680 kb on + strand at 2504.681 kb on - strand at 2504.830 kb on + strand, within PS417_11640 at 2505.082 kb on + strand, within PS417_11640 at 2505.149 kb on + strand, within PS417_11640 at 2505.150 kb on - strand, within PS417_11640 at 2505.150 kb on - strand, within PS417_11640 at 2505.150 kb on - strand, within PS417_11640 at 2505.150 kb on - strand, within PS417_11640
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.006 mg/ml remove 2,502,283 + PS417_11630 0.40 -2.1 2,502,283 + PS417_11630 0.40 +0.7 2,502,283 + PS417_11630 0.40 -0.4 2,502,283 + PS417_11630 0.40 +0.4 2,502,283 + PS417_11630 0.40 +0.3 2,502,284 - PS417_11630 0.40 -1.1 2,502,324 + PS417_11630 0.43 -1.1 2,502,348 - PS417_11630 0.45 -2.5 2,502,591 + PS417_11630 0.63 -0.4 2,502,591 + PS417_11630 0.63 -0.0 2,502,649 + PS417_11630 0.68 +1.0 2,502,649 + PS417_11630 0.68 -0.1 2,502,649 + PS417_11630 0.68 -0.2 2,502,817 + PS417_11630 0.81 -0.3 2,503,039 + -1.0 2,503,040 - -0.3 2,503,091 + -1.2 2,503,091 + -0.2 2,503,105 + +0.6 2,504,509 - -0.7 2,504,680 + +0.4 2,504,681 - +2.3 2,504,830 + PS417_11640 0.15 -0.0 2,505,082 + PS417_11640 0.50 +0.4 2,505,149 + PS417_11640 0.59 -0.2 2,505,150 - PS417_11640 0.59 -1.2 2,505,150 - PS417_11640 0.59 -0.4 2,505,150 - PS417_11640 0.59 -1.0 2,505,150 - PS417_11640 0.59 -2.2
Or see this region's nucleotide sequence