Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1209

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1208 and B158DRAFT_1209 overlap by 1 nucleotidesB158DRAFT_1209 and B158DRAFT_1210 are separated by 33 nucleotides B158DRAFT_1208: B158DRAFT_1208 - cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-), at 1,248,502 to 1,249,467 _1208 B158DRAFT_1209: B158DRAFT_1209 - hypothetical protein, at 1,249,467 to 1,249,769 _1209 B158DRAFT_1210: B158DRAFT_1210 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,249,803 to 1,250,978 _1210 Position (kb) 1249 1250Strain fitness (log2 ratio) -2 -1 0 1 2at 1248.515 kb on - strandat 1248.588 kb on + strandat 1248.714 kb on + strand, within B158DRAFT_1208at 1248.853 kb on + strand, within B158DRAFT_1208at 1248.856 kb on - strand, within B158DRAFT_1208at 1248.856 kb on - strand, within B158DRAFT_1208at 1248.891 kb on + strand, within B158DRAFT_1208at 1248.893 kb on - strand, within B158DRAFT_1208at 1249.005 kb on + strand, within B158DRAFT_1208at 1249.228 kb on - strand, within B158DRAFT_1208at 1249.282 kb on + strand, within B158DRAFT_1208at 1249.282 kb on + strand, within B158DRAFT_1208at 1249.329 kb on + strand, within B158DRAFT_1208at 1249.342 kb on + strand, within B158DRAFT_1208at 1249.342 kb on + strand, within B158DRAFT_1208at 1249.350 kb on - strand, within B158DRAFT_1208at 1249.352 kb on + strand, within B158DRAFT_1208at 1249.601 kb on + strand, within B158DRAFT_1209at 1249.601 kb on + strand, within B158DRAFT_1209at 1249.637 kb on + strand, within B158DRAFT_1209at 1249.727 kb on + strand, within B158DRAFT_1209at 1249.727 kb on + strand, within B158DRAFT_1209at 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.750 kb on - strandat 1249.750 kb on - strandat 1249.783 kb on + strandat 1249.783 kb on + strandat 1249.783 kb on + strandat 1250.018 kb on + strand, within B158DRAFT_1210at 1250.058 kb on + strand, within B158DRAFT_1210at 1250.080 kb on + strand, within B158DRAFT_1210at 1250.095 kb on - strand, within B158DRAFT_1210at 1250.187 kb on + strand, within B158DRAFT_1210at 1250.257 kb on - strand, within B158DRAFT_1210at 1250.353 kb on - strand, within B158DRAFT_1210at 1250.597 kb on - strand, within B158DRAFT_1210at 1250.647 kb on - strand, within B158DRAFT_1210at 1250.723 kb on + strand, within B158DRAFT_1210at 1250.731 kb on - strand, within B158DRAFT_1210

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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1,248,515 - -1.9
1,248,588 + -0.9
1,248,714 + B158DRAFT_1208 0.22 -1.1
1,248,853 + B158DRAFT_1208 0.36 +0.9
1,248,856 - B158DRAFT_1208 0.37 +0.9
1,248,856 - B158DRAFT_1208 0.37 +0.3
1,248,891 + B158DRAFT_1208 0.40 +0.9
1,248,893 - B158DRAFT_1208 0.40 +0.9
1,249,005 + B158DRAFT_1208 0.52 +0.1
1,249,228 - B158DRAFT_1208 0.75 -1.1
1,249,282 + B158DRAFT_1208 0.81 -1.1
1,249,282 + B158DRAFT_1208 0.81 -0.1
1,249,329 + B158DRAFT_1208 0.86 -0.9
1,249,342 + B158DRAFT_1208 0.87 -0.1
1,249,342 + B158DRAFT_1208 0.87 -1.4
1,249,350 - B158DRAFT_1208 0.88 -0.7
1,249,352 + B158DRAFT_1208 0.88 -1.4
1,249,601 + B158DRAFT_1209 0.44 -0.2
1,249,601 + B158DRAFT_1209 0.44 +0.2
1,249,637 + B158DRAFT_1209 0.56 -0.1
1,249,727 + B158DRAFT_1209 0.86 -0.9
1,249,727 + B158DRAFT_1209 0.86 -0.5
1,249,742 + +0.3
1,249,742 + -0.6
1,249,742 + +0.2
1,249,742 + +0.1
1,249,742 + -0.4
1,249,742 + -0.0
1,249,742 + -0.1
1,249,742 + +0.3
1,249,742 + -0.3
1,249,742 + +0.1
1,249,742 + +0.6
1,249,742 + +0.0
1,249,742 + +0.3
1,249,742 + -0.6
1,249,742 + -0.1
1,249,742 + -0.7
1,249,750 - +2.5
1,249,750 - -1.4
1,249,783 + -0.3
1,249,783 + +0.2
1,249,783 + +0.1
1,250,018 + B158DRAFT_1210 0.18 -0.1
1,250,058 + B158DRAFT_1210 0.22 -0.1
1,250,080 + B158DRAFT_1210 0.24 -0.7
1,250,095 - B158DRAFT_1210 0.25 -0.7
1,250,187 + B158DRAFT_1210 0.33 -0.7
1,250,257 - B158DRAFT_1210 0.39 +1.9
1,250,353 - B158DRAFT_1210 0.47 +2.5
1,250,597 - B158DRAFT_1210 0.68 -0.1
1,250,647 - B158DRAFT_1210 0.72 +0.9
1,250,723 + B158DRAFT_1210 0.78 -0.7
1,250,731 - B158DRAFT_1210 0.79 +0.9

Or see this region's nucleotide sequence