Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1208 and B158DRAFT_1209 overlap by 1 nucleotides B158DRAFT_1209 and B158DRAFT_1210 are separated by 33 nucleotides
B158DRAFT_1208: B158DRAFT_1208 - cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-), at 1,248,502 to 1,249,467
_1208
B158DRAFT_1209: B158DRAFT_1209 - hypothetical protein, at 1,249,467 to 1,249,769
_1209
B158DRAFT_1210: B158DRAFT_1210 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,249,803 to 1,250,978
_1210
Position (kb)
1249
1250 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1248.515 kb on - strand at 1248.588 kb on + strand at 1248.714 kb on + strand, within B158DRAFT_1208 at 1248.853 kb on + strand, within B158DRAFT_1208 at 1248.856 kb on - strand, within B158DRAFT_1208 at 1248.856 kb on - strand, within B158DRAFT_1208 at 1248.891 kb on + strand, within B158DRAFT_1208 at 1248.893 kb on - strand, within B158DRAFT_1208 at 1249.005 kb on + strand, within B158DRAFT_1208 at 1249.228 kb on - strand, within B158DRAFT_1208 at 1249.282 kb on + strand, within B158DRAFT_1208 at 1249.282 kb on + strand, within B158DRAFT_1208 at 1249.329 kb on + strand, within B158DRAFT_1208 at 1249.342 kb on + strand, within B158DRAFT_1208 at 1249.342 kb on + strand, within B158DRAFT_1208 at 1249.350 kb on - strand, within B158DRAFT_1208 at 1249.352 kb on + strand, within B158DRAFT_1208 at 1249.601 kb on + strand, within B158DRAFT_1209 at 1249.601 kb on + strand, within B158DRAFT_1209 at 1249.637 kb on + strand, within B158DRAFT_1209 at 1249.727 kb on + strand, within B158DRAFT_1209 at 1249.727 kb on + strand, within B158DRAFT_1209 at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.742 kb on + strand at 1249.750 kb on - strand at 1249.750 kb on - strand at 1249.783 kb on + strand at 1249.783 kb on + strand at 1249.783 kb on + strand at 1250.018 kb on + strand, within B158DRAFT_1210 at 1250.058 kb on + strand, within B158DRAFT_1210 at 1250.080 kb on + strand, within B158DRAFT_1210 at 1250.095 kb on - strand, within B158DRAFT_1210 at 1250.187 kb on + strand, within B158DRAFT_1210 at 1250.257 kb on - strand, within B158DRAFT_1210 at 1250.353 kb on - strand, within B158DRAFT_1210 at 1250.597 kb on - strand, within B158DRAFT_1210 at 1250.647 kb on - strand, within B158DRAFT_1210 at 1250.723 kb on + strand, within B158DRAFT_1210 at 1250.731 kb on - strand, within B158DRAFT_1210
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 1,248,515 - -1.9 1,248,588 + -0.9 1,248,714 + B158DRAFT_1208 0.22 -1.1 1,248,853 + B158DRAFT_1208 0.36 +0.9 1,248,856 - B158DRAFT_1208 0.37 +0.9 1,248,856 - B158DRAFT_1208 0.37 +0.3 1,248,891 + B158DRAFT_1208 0.40 +0.9 1,248,893 - B158DRAFT_1208 0.40 +0.9 1,249,005 + B158DRAFT_1208 0.52 +0.1 1,249,228 - B158DRAFT_1208 0.75 -1.1 1,249,282 + B158DRAFT_1208 0.81 -1.1 1,249,282 + B158DRAFT_1208 0.81 -0.1 1,249,329 + B158DRAFT_1208 0.86 -0.9 1,249,342 + B158DRAFT_1208 0.87 -0.1 1,249,342 + B158DRAFT_1208 0.87 -1.4 1,249,350 - B158DRAFT_1208 0.88 -0.7 1,249,352 + B158DRAFT_1208 0.88 -1.4 1,249,601 + B158DRAFT_1209 0.44 -0.2 1,249,601 + B158DRAFT_1209 0.44 +0.2 1,249,637 + B158DRAFT_1209 0.56 -0.1 1,249,727 + B158DRAFT_1209 0.86 -0.9 1,249,727 + B158DRAFT_1209 0.86 -0.5 1,249,742 + +0.3 1,249,742 + -0.6 1,249,742 + +0.2 1,249,742 + +0.1 1,249,742 + -0.4 1,249,742 + -0.0 1,249,742 + -0.1 1,249,742 + +0.3 1,249,742 + -0.3 1,249,742 + +0.1 1,249,742 + +0.6 1,249,742 + +0.0 1,249,742 + +0.3 1,249,742 + -0.6 1,249,742 + -0.1 1,249,742 + -0.7 1,249,750 - +2.5 1,249,750 - -1.4 1,249,783 + -0.3 1,249,783 + +0.2 1,249,783 + +0.1 1,250,018 + B158DRAFT_1210 0.18 -0.1 1,250,058 + B158DRAFT_1210 0.22 -0.1 1,250,080 + B158DRAFT_1210 0.24 -0.7 1,250,095 - B158DRAFT_1210 0.25 -0.7 1,250,187 + B158DRAFT_1210 0.33 -0.7 1,250,257 - B158DRAFT_1210 0.39 +1.9 1,250,353 - B158DRAFT_1210 0.47 +2.5 1,250,597 - B158DRAFT_1210 0.68 -0.1 1,250,647 - B158DRAFT_1210 0.72 +0.9 1,250,723 + B158DRAFT_1210 0.78 -0.7 1,250,731 - B158DRAFT_1210 0.79 +0.9
Or see this region's nucleotide sequence