Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0966

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0965 and B158DRAFT_0966 are separated by 12 nucleotidesB158DRAFT_0966 and B158DRAFT_0967 are separated by 6 nucleotides B158DRAFT_0965: B158DRAFT_0965 - Serine/threonine protein phosphatase, at 996,747 to 997,550 _0965 B158DRAFT_0966: B158DRAFT_0966 - FOG: FHA domain, at 997,563 to 998,111 _0966 B158DRAFT_0967: B158DRAFT_0967 - Serine/threonine protein kinase, at 998,118 to 999,821 _0967 Position (kb) 997 998 999Strain fitness (log2 ratio) -2 -1 0 1at 996.578 kb on - strandat 996.637 kb on - strandat 996.637 kb on - strandat 996.714 kb on + strandat 996.722 kb on - strandat 996.745 kb on - strandat 996.843 kb on + strand, within B158DRAFT_0965at 996.887 kb on - strand, within B158DRAFT_0965at 996.945 kb on + strand, within B158DRAFT_0965at 996.945 kb on + strand, within B158DRAFT_0965at 996.946 kb on + strand, within B158DRAFT_0965at 996.946 kb on + strand, within B158DRAFT_0965at 996.946 kb on + strand, within B158DRAFT_0965at 996.954 kb on - strand, within B158DRAFT_0965at 996.961 kb on + strand, within B158DRAFT_0965at 996.969 kb on - strand, within B158DRAFT_0965at 997.120 kb on + strand, within B158DRAFT_0965at 997.152 kb on + strand, within B158DRAFT_0965at 997.190 kb on - strand, within B158DRAFT_0965at 997.232 kb on - strand, within B158DRAFT_0965at 997.244 kb on + strand, within B158DRAFT_0965at 997.254 kb on + strand, within B158DRAFT_0965at 997.254 kb on + strand, within B158DRAFT_0965at 997.254 kb on + strand, within B158DRAFT_0965at 997.254 kb on + strand, within B158DRAFT_0965at 997.262 kb on - strand, within B158DRAFT_0965at 997.262 kb on - strand, within B158DRAFT_0965at 997.335 kb on - strand, within B158DRAFT_0965at 997.359 kb on + strand, within B158DRAFT_0965at 997.367 kb on - strand, within B158DRAFT_0965at 997.465 kb on + strand, within B158DRAFT_0965at 997.552 kb on - strandat 997.557 kb on - strandat 997.790 kb on + strand, within B158DRAFT_0966at 997.790 kb on + strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.798 kb on - strand, within B158DRAFT_0966at 997.820 kb on - strand, within B158DRAFT_0966at 997.831 kb on + strand, within B158DRAFT_0966at 997.855 kb on + strand, within B158DRAFT_0966at 997.915 kb on - strand, within B158DRAFT_0966at 998.128 kb on + strandat 998.134 kb on - strandat 998.196 kb on - strandat 998.440 kb on + strand, within B158DRAFT_0967at 998.440 kb on + strand, within B158DRAFT_0967at 998.440 kb on + strand, within B158DRAFT_0967at 998.448 kb on - strand, within B158DRAFT_0967at 998.476 kb on + strand, within B158DRAFT_0967at 998.484 kb on - strand, within B158DRAFT_0967at 998.587 kb on - strand, within B158DRAFT_0967at 998.633 kb on - strand, within B158DRAFT_0967at 998.661 kb on - strand, within B158DRAFT_0967at 998.663 kb on + strand, within B158DRAFT_0967at 998.668 kb on + strand, within B158DRAFT_0967at 998.671 kb on - strand, within B158DRAFT_0967at 998.678 kb on + strand, within B158DRAFT_0967at 998.678 kb on + strand, within B158DRAFT_0967at 998.686 kb on - strand, within B158DRAFT_0967at 998.733 kb on - strand, within B158DRAFT_0967at 998.799 kb on + strand, within B158DRAFT_0967at 998.799 kb on + strand, within B158DRAFT_0967at 998.887 kb on + strand, within B158DRAFT_0967at 998.895 kb on - strand, within B158DRAFT_0967at 998.960 kb on + strand, within B158DRAFT_0967at 998.960 kb on + strand, within B158DRAFT_0967at 998.963 kb on - strand, within B158DRAFT_0967at 999.067 kb on - strand, within B158DRAFT_0967at 999.067 kb on - strand, within B158DRAFT_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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996,578 - +1.0
996,637 - -0.6
996,637 - +0.3
996,714 + -0.1
996,722 - -2.0
996,745 - -0.4
996,843 + B158DRAFT_0965 0.12 -0.3
996,887 - B158DRAFT_0965 0.17 +0.5
996,945 + B158DRAFT_0965 0.25 -0.7
996,945 + B158DRAFT_0965 0.25 -0.4
996,946 + B158DRAFT_0965 0.25 -0.5
996,946 + B158DRAFT_0965 0.25 +0.0
996,946 + B158DRAFT_0965 0.25 -1.0
996,954 - B158DRAFT_0965 0.26 -0.6
996,961 + B158DRAFT_0965 0.27 -0.3
996,969 - B158DRAFT_0965 0.28 -0.7
997,120 + B158DRAFT_0965 0.46 -0.7
997,152 + B158DRAFT_0965 0.50 -0.4
997,190 - B158DRAFT_0965 0.55 -0.1
997,232 - B158DRAFT_0965 0.60 +0.4
997,244 + B158DRAFT_0965 0.62 +0.1
997,254 + B158DRAFT_0965 0.63 -0.3
997,254 + B158DRAFT_0965 0.63 -0.4
997,254 + B158DRAFT_0965 0.63 -0.1
997,254 + B158DRAFT_0965 0.63 -0.1
997,262 - B158DRAFT_0965 0.64 +0.2
997,262 - B158DRAFT_0965 0.64 -0.8
997,335 - B158DRAFT_0965 0.73 +0.6
997,359 + B158DRAFT_0965 0.76 -1.1
997,367 - B158DRAFT_0965 0.77 -0.1
997,465 + B158DRAFT_0965 0.89 -0.1
997,552 - +0.1
997,557 - -0.1
997,790 + B158DRAFT_0966 0.41 -0.5
997,790 + B158DRAFT_0966 0.41 -0.3
997,798 - B158DRAFT_0966 0.43 +0.2
997,798 - B158DRAFT_0966 0.43 -0.5
997,798 - B158DRAFT_0966 0.43 -0.2
997,798 - B158DRAFT_0966 0.43 -0.5
997,798 - B158DRAFT_0966 0.43 -0.1
997,798 - B158DRAFT_0966 0.43 -1.5
997,820 - B158DRAFT_0966 0.47 -0.8
997,831 + B158DRAFT_0966 0.49 -0.4
997,855 + B158DRAFT_0966 0.53 -0.2
997,915 - B158DRAFT_0966 0.64 +0.1
998,128 + +0.4
998,134 - +0.1
998,196 - -0.2
998,440 + B158DRAFT_0967 0.19 -0.5
998,440 + B158DRAFT_0967 0.19 -0.1
998,440 + B158DRAFT_0967 0.19 -0.1
998,448 - B158DRAFT_0967 0.19 +0.8
998,476 + B158DRAFT_0967 0.21 -0.1
998,484 - B158DRAFT_0967 0.21 +0.1
998,587 - B158DRAFT_0967 0.28 +0.1
998,633 - B158DRAFT_0967 0.30 -1.7
998,661 - B158DRAFT_0967 0.32 +0.0
998,663 + B158DRAFT_0967 0.32 +0.1
998,668 + B158DRAFT_0967 0.32 -1.0
998,671 - B158DRAFT_0967 0.32 +0.4
998,678 + B158DRAFT_0967 0.33 -0.1
998,678 + B158DRAFT_0967 0.33 -0.4
998,686 - B158DRAFT_0967 0.33 +0.3
998,733 - B158DRAFT_0967 0.36 -0.5
998,799 + B158DRAFT_0967 0.40 -0.8
998,799 + B158DRAFT_0967 0.40 -0.1
998,887 + B158DRAFT_0967 0.45 +0.2
998,895 - B158DRAFT_0967 0.46 +0.0
998,960 + B158DRAFT_0967 0.49 -0.9
998,960 + B158DRAFT_0967 0.49 -1.5
998,963 - B158DRAFT_0967 0.50 +0.0
999,067 - B158DRAFT_0967 0.56 -1.8
999,067 - B158DRAFT_0967 0.56 +0.3

Or see this region's nucleotide sequence