Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0938 and B158DRAFT_0939 are separated by 36 nucleotides B158DRAFT_0939 and B158DRAFT_0940 are separated by 235 nucleotides B158DRAFT_0940 and B158DRAFT_0941 are separated by 8 nucleotides B158DRAFT_0941 and B158DRAFT_0942 are separated by 97 nucleotides
B158DRAFT_0938: B158DRAFT_0938 - hypothetical protein, at 966,633 to 967,064
_0938
B158DRAFT_0939: B158DRAFT_0939 - Transcriptional regulators, at 967,101 to 967,556
_0939
B158DRAFT_0940: B158DRAFT_0940 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 967,792 to 968,916
_0940
B158DRAFT_0941: B158DRAFT_0941 - S-formylglutathione hydrolase, at 968,925 to 969,761
_0941
B158DRAFT_0942: B158DRAFT_0942 - Nitric oxide reductase large subunit, at 969,859 to 972,138
_0942
Position (kb) 967
968
969 Strain fitness (log2 ratio) -1
0
1
2 at 966.868 kb on - strand, within B158DRAFT_0938 at 967.114 kb on - strand at 967.126 kb on + strand at 967.178 kb on + strand, within B158DRAFT_0939 at 967.195 kb on - strand, within B158DRAFT_0939 at 967.260 kb on + strand, within B158DRAFT_0939 at 967.268 kb on - strand, within B158DRAFT_0939 at 967.268 kb on - strand, within B158DRAFT_0939 at 967.320 kb on - strand, within B158DRAFT_0939 at 967.329 kb on - strand, within B158DRAFT_0939 at 967.329 kb on - strand, within B158DRAFT_0939 at 967.360 kb on - strand, within B158DRAFT_0939 at 967.362 kb on + strand, within B158DRAFT_0939 at 967.487 kb on + strand, within B158DRAFT_0939 at 967.487 kb on + strand, within B158DRAFT_0939 at 967.635 kb on + strand at 967.748 kb on + strand at 967.748 kb on + strand at 967.756 kb on - strand at 967.756 kb on - strand at 967.756 kb on - strand at 967.787 kb on + strand at 967.787 kb on + strand at 967.812 kb on + strand at 967.812 kb on + strand at 967.820 kb on - strand at 967.822 kb on + strand at 967.931 kb on - strand, within B158DRAFT_0940 at 967.931 kb on - strand, within B158DRAFT_0940 at 967.944 kb on - strand, within B158DRAFT_0940 at 968.026 kb on + strand, within B158DRAFT_0940 at 968.026 kb on + strand, within B158DRAFT_0940 at 968.034 kb on - strand, within B158DRAFT_0940 at 968.034 kb on - strand, within B158DRAFT_0940 at 968.036 kb on + strand, within B158DRAFT_0940 at 968.036 kb on + strand, within B158DRAFT_0940 at 968.044 kb on - strand, within B158DRAFT_0940 at 968.044 kb on - strand, within B158DRAFT_0940 at 968.044 kb on - strand, within B158DRAFT_0940 at 968.080 kb on - strand, within B158DRAFT_0940 at 968.176 kb on - strand, within B158DRAFT_0940 at 968.216 kb on - strand, within B158DRAFT_0940 at 968.317 kb on - strand, within B158DRAFT_0940 at 968.338 kb on + strand, within B158DRAFT_0940 at 968.340 kb on + strand, within B158DRAFT_0940 at 968.346 kb on - strand, within B158DRAFT_0940 at 968.346 kb on - strand, within B158DRAFT_0940 at 968.346 kb on - strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.396 kb on + strand, within B158DRAFT_0940 at 968.398 kb on + strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.404 kb on - strand, within B158DRAFT_0940 at 968.459 kb on + strand, within B158DRAFT_0940 at 968.612 kb on - strand, within B158DRAFT_0940 at 968.623 kb on + strand, within B158DRAFT_0940 at 968.631 kb on - strand, within B158DRAFT_0940 at 968.631 kb on - strand, within B158DRAFT_0940 at 968.631 kb on - strand, within B158DRAFT_0940 at 968.652 kb on - strand, within B158DRAFT_0940 at 968.765 kb on + strand, within B158DRAFT_0940 at 968.770 kb on + strand, within B158DRAFT_0940 at 968.773 kb on - strand, within B158DRAFT_0940 at 968.831 kb on - strand at 968.884 kb on + strand at 968.923 kb on + strand at 969.089 kb on + strand, within B158DRAFT_0941 at 969.089 kb on + strand, within B158DRAFT_0941 at 969.089 kb on + strand, within B158DRAFT_0941 at 969.089 kb on + strand, within B158DRAFT_0941 at 969.097 kb on - strand, within B158DRAFT_0941 at 969.097 kb on - strand, within B158DRAFT_0941 at 969.097 kb on - strand, within B158DRAFT_0941 at 969.119 kb on + strand, within B158DRAFT_0941 at 969.152 kb on - strand, within B158DRAFT_0941 at 969.221 kb on + strand, within B158DRAFT_0941 at 969.371 kb on - strand, within B158DRAFT_0941 at 969.507 kb on - strand, within B158DRAFT_0941 at 969.507 kb on - strand, within B158DRAFT_0941 at 969.522 kb on + strand, within B158DRAFT_0941 at 969.530 kb on - strand, within B158DRAFT_0941 at 969.607 kb on - strand, within B158DRAFT_0941 at 969.614 kb on + strand, within B158DRAFT_0941 at 969.614 kb on + strand, within B158DRAFT_0941 at 969.614 kb on + strand, within B158DRAFT_0941 at 969.622 kb on - strand, within B158DRAFT_0941 at 969.622 kb on - strand, within B158DRAFT_0941 at 969.690 kb on + strand at 969.745 kb on - strand at 969.796 kb on + strand at 969.814 kb on - strand at 969.877 kb on - strand at 969.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 966,868 - B158DRAFT_0938 0.54 +0.7 967,114 - +0.5 967,126 + -0.1 967,178 + B158DRAFT_0939 0.17 -0.1 967,195 - B158DRAFT_0939 0.21 -0.3 967,260 + B158DRAFT_0939 0.35 +0.1 967,268 - B158DRAFT_0939 0.37 -0.2 967,268 - B158DRAFT_0939 0.37 -0.1 967,320 - B158DRAFT_0939 0.48 -0.2 967,329 - B158DRAFT_0939 0.50 -0.3 967,329 - B158DRAFT_0939 0.50 -0.1 967,360 - B158DRAFT_0939 0.57 +0.2 967,362 + B158DRAFT_0939 0.57 -0.5 967,487 + B158DRAFT_0939 0.85 -0.3 967,487 + B158DRAFT_0939 0.85 -0.1 967,635 + -0.6 967,748 + -0.8 967,748 + +0.6 967,756 - +0.5 967,756 - -0.2 967,756 - -0.2 967,787 + +0.0 967,787 + -1.2 967,812 + +2.6 967,812 + -0.5 967,820 - -0.1 967,822 + +0.1 967,931 - B158DRAFT_0940 0.12 -1.0 967,931 - B158DRAFT_0940 0.12 -0.1 967,944 - B158DRAFT_0940 0.14 +0.1 968,026 + B158DRAFT_0940 0.21 -0.1 968,026 + B158DRAFT_0940 0.21 -0.1 968,034 - B158DRAFT_0940 0.22 +0.1 968,034 - B158DRAFT_0940 0.22 -0.1 968,036 + B158DRAFT_0940 0.22 -0.5 968,036 + B158DRAFT_0940 0.22 -0.2 968,044 - B158DRAFT_0940 0.22 +0.0 968,044 - B158DRAFT_0940 0.22 -0.2 968,044 - B158DRAFT_0940 0.22 -0.5 968,080 - B158DRAFT_0940 0.26 -0.4 968,176 - B158DRAFT_0940 0.34 -0.1 968,216 - B158DRAFT_0940 0.38 -0.8 968,317 - B158DRAFT_0940 0.47 -0.2 968,338 + B158DRAFT_0940 0.49 +0.3 968,340 + B158DRAFT_0940 0.49 -0.4 968,346 - B158DRAFT_0940 0.49 +0.4 968,346 - B158DRAFT_0940 0.49 -0.2 968,346 - B158DRAFT_0940 0.49 +0.9 968,396 + B158DRAFT_0940 0.54 -0.4 968,396 + B158DRAFT_0940 0.54 -0.6 968,396 + B158DRAFT_0940 0.54 +0.6 968,396 + B158DRAFT_0940 0.54 -0.3 968,396 + B158DRAFT_0940 0.54 -0.3 968,396 + B158DRAFT_0940 0.54 -0.2 968,396 + B158DRAFT_0940 0.54 -0.6 968,396 + B158DRAFT_0940 0.54 +0.1 968,396 + B158DRAFT_0940 0.54 +0.2 968,398 + B158DRAFT_0940 0.54 -0.2 968,404 - B158DRAFT_0940 0.54 -0.1 968,404 - B158DRAFT_0940 0.54 -0.6 968,404 - B158DRAFT_0940 0.54 +0.4 968,404 - B158DRAFT_0940 0.54 +0.2 968,404 - B158DRAFT_0940 0.54 -0.1 968,404 - B158DRAFT_0940 0.54 +0.4 968,404 - B158DRAFT_0940 0.54 +0.0 968,404 - B158DRAFT_0940 0.54 +0.1 968,404 - B158DRAFT_0940 0.54 +0.4 968,404 - B158DRAFT_0940 0.54 -0.8 968,404 - B158DRAFT_0940 0.54 -0.1 968,404 - B158DRAFT_0940 0.54 -0.5 968,459 + B158DRAFT_0940 0.59 +0.0 968,612 - B158DRAFT_0940 0.73 -0.1 968,623 + B158DRAFT_0940 0.74 +0.0 968,631 - B158DRAFT_0940 0.75 +0.4 968,631 - B158DRAFT_0940 0.75 +1.3 968,631 - B158DRAFT_0940 0.75 +0.1 968,652 - B158DRAFT_0940 0.76 -0.3 968,765 + B158DRAFT_0940 0.86 +0.0 968,770 + B158DRAFT_0940 0.87 +0.0 968,773 - B158DRAFT_0940 0.87 +0.3 968,831 - +0.2 968,884 + +0.0 968,923 + -0.5 969,089 + B158DRAFT_0941 0.20 +0.6 969,089 + B158DRAFT_0941 0.20 -0.7 969,089 + B158DRAFT_0941 0.20 -0.1 969,089 + B158DRAFT_0941 0.20 -0.5 969,097 - B158DRAFT_0941 0.21 -0.2 969,097 - B158DRAFT_0941 0.21 +0.0 969,097 - B158DRAFT_0941 0.21 -0.1 969,119 + B158DRAFT_0941 0.23 -0.4 969,152 - B158DRAFT_0941 0.27 -0.4 969,221 + B158DRAFT_0941 0.35 -0.2 969,371 - B158DRAFT_0941 0.53 -0.5 969,507 - B158DRAFT_0941 0.70 -0.8 969,507 - B158DRAFT_0941 0.70 +0.1 969,522 + B158DRAFT_0941 0.71 -0.2 969,530 - B158DRAFT_0941 0.72 -0.1 969,607 - B158DRAFT_0941 0.81 -0.3 969,614 + B158DRAFT_0941 0.82 -1.0 969,614 + B158DRAFT_0941 0.82 -0.6 969,614 + B158DRAFT_0941 0.82 -0.7 969,622 - B158DRAFT_0941 0.83 +0.2 969,622 - B158DRAFT_0941 0.83 +0.5 969,690 + -0.2 969,745 - -0.3 969,796 + -0.2 969,814 - -1.4 969,877 - -0.6 969,898 + -0.8
Or see this region's nucleotide sequence