Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0848

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0847 and B158DRAFT_0848 are separated by 37 nucleotidesB158DRAFT_0848 and B158DRAFT_0849 are separated by 177 nucleotides B158DRAFT_0847: B158DRAFT_0847 - Zn-dependent protease with chaperone function, at 861,575 to 863,533 _0847 B158DRAFT_0848: B158DRAFT_0848 - Uncharacterized conserved protein, at 863,571 to 864,158 _0848 B158DRAFT_0849: B158DRAFT_0849 - Glutamine synthetase adenylyltransferase, at 864,336 to 867,215 _0849 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1at 862.717 kb on - strand, within B158DRAFT_0847at 862.735 kb on - strand, within B158DRAFT_0847at 863.035 kb on - strand, within B158DRAFT_0847at 863.059 kb on - strand, within B158DRAFT_0847at 863.062 kb on + strand, within B158DRAFT_0847at 863.070 kb on - strand, within B158DRAFT_0847at 863.077 kb on + strand, within B158DRAFT_0847at 863.155 kb on + strand, within B158DRAFT_0847at 863.166 kb on - strand, within B158DRAFT_0847at 863.194 kb on + strand, within B158DRAFT_0847at 863.254 kb on + strand, within B158DRAFT_0847at 863.254 kb on - strand, within B158DRAFT_0847at 863.275 kb on + strand, within B158DRAFT_0847at 863.276 kb on - strand, within B158DRAFT_0847at 863.295 kb on - strand, within B158DRAFT_0847at 863.295 kb on - strand, within B158DRAFT_0847at 863.295 kb on - strand, within B158DRAFT_0847at 863.370 kb on - strandat 863.403 kb on - strandat 863.450 kb on + strandat 863.697 kb on - strand, within B158DRAFT_0848at 863.726 kb on - strand, within B158DRAFT_0848at 863.726 kb on - strand, within B158DRAFT_0848at 863.752 kb on + strand, within B158DRAFT_0848at 863.798 kb on + strand, within B158DRAFT_0848at 863.811 kb on - strand, within B158DRAFT_0848at 863.832 kb on + strand, within B158DRAFT_0848at 863.840 kb on - strand, within B158DRAFT_0848at 863.840 kb on - strand, within B158DRAFT_0848at 864.087 kb on - strand, within B158DRAFT_0848at 864.135 kb on - strandat 864.137 kb on - strandat 864.256 kb on + strandat 864.352 kb on - strandat 864.378 kb on + strandat 864.400 kb on + strandat 864.400 kb on + strandat 864.408 kb on - strandat 864.408 kb on - strandat 864.410 kb on + strandat 864.427 kb on - strandat 864.432 kb on - strandat 864.443 kb on + strandat 864.443 kb on + strandat 864.443 kb on + strandat 864.451 kb on - strandat 864.451 kb on - strandat 864.451 kb on - strandat 864.480 kb on - strandat 864.528 kb on + strandat 864.536 kb on - strandat 864.541 kb on + strandat 864.559 kb on - strandat 864.634 kb on + strand, within B158DRAFT_0849at 864.634 kb on + strand, within B158DRAFT_0849at 864.642 kb on - strand, within B158DRAFT_0849at 864.668 kb on + strand, within B158DRAFT_0849at 864.730 kb on - strand, within B158DRAFT_0849at 864.732 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.737 kb on + strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.745 kb on - strand, within B158DRAFT_0849at 864.846 kb on - strand, within B158DRAFT_0849at 864.891 kb on - strand, within B158DRAFT_0849at 864.908 kb on - strand, within B158DRAFT_0849at 864.910 kb on + strand, within B158DRAFT_0849at 864.923 kb on - strand, within B158DRAFT_0849at 865.020 kb on + strand, within B158DRAFT_0849at 865.067 kb on + strand, within B158DRAFT_0849at 865.067 kb on + strand, within B158DRAFT_0849at 865.075 kb on - strand, within B158DRAFT_0849at 865.090 kb on + strand, within B158DRAFT_0849at 865.090 kb on - strand, within B158DRAFT_0849at 865.156 kb on - strand, within B158DRAFT_0849

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
862,717 - B158DRAFT_0847 0.58 -0.2
862,735 - B158DRAFT_0847 0.59 -0.2
863,035 - B158DRAFT_0847 0.75 +0.1
863,059 - B158DRAFT_0847 0.76 -0.8
863,062 + B158DRAFT_0847 0.76 +0.0
863,070 - B158DRAFT_0847 0.76 +0.1
863,077 + B158DRAFT_0847 0.77 -0.2
863,155 + B158DRAFT_0847 0.81 -1.3
863,166 - B158DRAFT_0847 0.81 +0.3
863,194 + B158DRAFT_0847 0.83 -0.0
863,254 + B158DRAFT_0847 0.86 -0.3
863,254 - B158DRAFT_0847 0.86 -1.6
863,275 + B158DRAFT_0847 0.87 -0.7
863,276 - B158DRAFT_0847 0.87 -2.0
863,295 - B158DRAFT_0847 0.88 +0.2
863,295 - B158DRAFT_0847 0.88 +0.2
863,295 - B158DRAFT_0847 0.88 +0.1
863,370 - -0.1
863,403 - -0.1
863,450 + -0.3
863,697 - B158DRAFT_0848 0.21 -0.1
863,726 - B158DRAFT_0848 0.26 +0.2
863,726 - B158DRAFT_0848 0.26 +0.7
863,752 + B158DRAFT_0848 0.31 -0.4
863,798 + B158DRAFT_0848 0.39 +0.7
863,811 - B158DRAFT_0848 0.41 -0.2
863,832 + B158DRAFT_0848 0.44 -0.0
863,840 - B158DRAFT_0848 0.46 +0.1
863,840 - B158DRAFT_0848 0.46 -0.0
864,087 - B158DRAFT_0848 0.88 +0.1
864,135 - -0.2
864,137 - -0.3
864,256 + -1.4
864,352 - -0.3
864,378 + +0.1
864,400 + -0.3
864,400 + -0.5
864,408 - -0.5
864,408 - -0.2
864,410 + -0.6
864,427 - -0.6
864,432 - +0.0
864,443 + -0.2
864,443 + -0.7
864,443 + -0.6
864,451 - -1.0
864,451 - -0.9
864,451 - -0.5
864,480 - +0.1
864,528 + -0.3
864,536 - -0.8
864,541 + +0.0
864,559 - -0.9
864,634 + B158DRAFT_0849 0.10 -0.8
864,634 + B158DRAFT_0849 0.10 -1.2
864,642 - B158DRAFT_0849 0.11 +0.1
864,668 + B158DRAFT_0849 0.12 -0.8
864,730 - B158DRAFT_0849 0.14 -0.7
864,732 + B158DRAFT_0849 0.14 -0.8
864,737 + B158DRAFT_0849 0.14 -0.8
864,737 + B158DRAFT_0849 0.14 -0.6
864,737 + B158DRAFT_0849 0.14 -1.0
864,737 + B158DRAFT_0849 0.14 -1.4
864,737 + B158DRAFT_0849 0.14 -3.0
864,737 + B158DRAFT_0849 0.14 -0.2
864,737 + B158DRAFT_0849 0.14 +0.3
864,745 - B158DRAFT_0849 0.14 +0.2
864,745 - B158DRAFT_0849 0.14 -0.8
864,745 - B158DRAFT_0849 0.14 -0.5
864,745 - B158DRAFT_0849 0.14 -1.1
864,745 - B158DRAFT_0849 0.14 -1.7
864,745 - B158DRAFT_0849 0.14 -0.6
864,846 - B158DRAFT_0849 0.18 -0.9
864,891 - B158DRAFT_0849 0.19 -1.4
864,908 - B158DRAFT_0849 0.20 -1.3
864,910 + B158DRAFT_0849 0.20 -0.8
864,923 - B158DRAFT_0849 0.20 -0.6
865,020 + B158DRAFT_0849 0.24 -0.4
865,067 + B158DRAFT_0849 0.25 -0.3
865,067 + B158DRAFT_0849 0.25 +0.2
865,075 - B158DRAFT_0849 0.26 -0.6
865,090 + B158DRAFT_0849 0.26 +0.2
865,090 - B158DRAFT_0849 0.26 -0.1
865,156 - B158DRAFT_0849 0.28 -0.1

Or see this region's nucleotide sequence