Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0668

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0666 and B158DRAFT_0667 overlap by 44 nucleotidesB158DRAFT_0667 and B158DRAFT_0668 are separated by 131 nucleotidesB158DRAFT_0668 and B158DRAFT_0669 overlap by 20 nucleotidesB158DRAFT_0669 and B158DRAFT_0670 are separated by 13 nucleotides B158DRAFT_0666: B158DRAFT_0666 - Protein of unknown function (DUF3667)., at 670,050 to 671,102 _0666 B158DRAFT_0667: B158DRAFT_0667 - Protein of unknown function (DUF2909)., at 671,059 to 671,343 _0667 B158DRAFT_0668: B158DRAFT_0668 - Uncharacterized conserved protein, at 671,475 to 672,260 _0668 B158DRAFT_0669: B158DRAFT_0669 - hypothetical protein, at 672,241 to 672,852 _0669 B158DRAFT_0670: B158DRAFT_0670 - Uncharacterized protein required for cytochrome oxidase assembly, at 672,866 to 673,975 _0670 Position (kb) 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1at 670.478 kb on + strand, within B158DRAFT_0666at 670.550 kb on + strand, within B158DRAFT_0666at 670.594 kb on + strand, within B158DRAFT_0666at 670.608 kb on + strand, within B158DRAFT_0666at 670.642 kb on + strand, within B158DRAFT_0666at 670.642 kb on + strand, within B158DRAFT_0666at 670.642 kb on + strand, within B158DRAFT_0666at 670.642 kb on + strand, within B158DRAFT_0666at 670.642 kb on + strand, within B158DRAFT_0666at 670.650 kb on - strand, within B158DRAFT_0666at 670.650 kb on - strand, within B158DRAFT_0666at 670.650 kb on - strand, within B158DRAFT_0666at 670.650 kb on - strand, within B158DRAFT_0666at 670.650 kb on - strand, within B158DRAFT_0666at 670.676 kb on + strand, within B158DRAFT_0666at 670.676 kb on + strand, within B158DRAFT_0666at 670.676 kb on + strand, within B158DRAFT_0666at 670.676 kb on + strand, within B158DRAFT_0666at 670.684 kb on - strand, within B158DRAFT_0666at 670.684 kb on - strand, within B158DRAFT_0666at 670.684 kb on - strand, within B158DRAFT_0666at 670.691 kb on - strand, within B158DRAFT_0666at 670.696 kb on - strand, within B158DRAFT_0666at 670.715 kb on + strand, within B158DRAFT_0666at 670.722 kb on + strand, within B158DRAFT_0666at 670.730 kb on - strand, within B158DRAFT_0666at 670.731 kb on + strand, within B158DRAFT_0666at 670.844 kb on + strand, within B158DRAFT_0666at 670.852 kb on - strand, within B158DRAFT_0666at 670.915 kb on - strand, within B158DRAFT_0666at 670.920 kb on - strand, within B158DRAFT_0666at 670.989 kb on - strand, within B158DRAFT_0666at 671.025 kb on + strandat 671.074 kb on - strandat 671.084 kb on - strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.086 kb on + strandat 671.094 kb on - strandat 671.094 kb on - strandat 671.094 kb on - strandat 671.110 kb on + strand, within B158DRAFT_0667at 671.131 kb on + strand, within B158DRAFT_0667at 671.144 kb on - strand, within B158DRAFT_0667at 671.160 kb on + strand, within B158DRAFT_0667at 671.160 kb on + strand, within B158DRAFT_0667at 671.202 kb on - strand, within B158DRAFT_0667at 671.229 kb on - strand, within B158DRAFT_0667at 671.261 kb on + strand, within B158DRAFT_0667at 671.485 kb on - strandat 671.510 kb on + strandat 671.515 kb on + strandat 671.523 kb on - strandat 671.526 kb on + strandat 671.602 kb on - strand, within B158DRAFT_0668at 671.651 kb on + strand, within B158DRAFT_0668at 671.656 kb on + strand, within B158DRAFT_0668at 671.688 kb on - strand, within B158DRAFT_0668at 671.694 kb on + strand, within B158DRAFT_0668at 671.704 kb on + strand, within B158DRAFT_0668at 671.704 kb on + strand, within B158DRAFT_0668at 671.712 kb on - strand, within B158DRAFT_0668at 671.712 kb on - strand, within B158DRAFT_0668at 671.712 kb on - strand, within B158DRAFT_0668at 671.712 kb on - strand, within B158DRAFT_0668at 671.713 kb on - strand, within B158DRAFT_0668at 671.727 kb on + strand, within B158DRAFT_0668at 671.764 kb on + strand, within B158DRAFT_0668at 671.771 kb on - strand, within B158DRAFT_0668at 671.772 kb on + strand, within B158DRAFT_0668at 671.777 kb on + strand, within B158DRAFT_0668at 671.802 kb on - strand, within B158DRAFT_0668at 671.846 kb on + strand, within B158DRAFT_0668at 671.913 kb on + strand, within B158DRAFT_0668at 671.921 kb on - strand, within B158DRAFT_0668at 671.921 kb on - strand, within B158DRAFT_0668at 671.928 kb on + strand, within B158DRAFT_0668at 671.928 kb on - strand, within B158DRAFT_0668at 671.950 kb on + strand, within B158DRAFT_0668at 672.057 kb on - strand, within B158DRAFT_0668at 672.098 kb on + strand, within B158DRAFT_0668at 672.100 kb on - strand, within B158DRAFT_0668at 672.104 kb on - strand, within B158DRAFT_0668at 672.141 kb on + strand, within B158DRAFT_0668at 672.168 kb on + strand, within B158DRAFT_0668at 672.235 kb on + strandat 672.312 kb on - strand, within B158DRAFT_0669at 672.348 kb on + strand, within B158DRAFT_0669at 672.368 kb on - strand, within B158DRAFT_0669at 672.386 kb on + strand, within B158DRAFT_0669at 672.409 kb on - strand, within B158DRAFT_0669at 672.466 kb on - strand, within B158DRAFT_0669at 672.478 kb on + strand, within B158DRAFT_0669at 672.545 kb on + strand, within B158DRAFT_0669at 672.545 kb on + strand, within B158DRAFT_0669at 672.550 kb on + strand, within B158DRAFT_0669at 672.550 kb on + strand, within B158DRAFT_0669at 672.550 kb on + strand, within B158DRAFT_0669at 672.550 kb on + strand, within B158DRAFT_0669at 672.551 kb on + strand, within B158DRAFT_0669at 672.553 kb on - strand, within B158DRAFT_0669at 672.553 kb on - strand, within B158DRAFT_0669at 672.553 kb on - strand, within B158DRAFT_0669at 672.558 kb on - strand, within B158DRAFT_0669at 672.558 kb on - strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.637 kb on + strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.645 kb on - strand, within B158DRAFT_0669at 672.685 kb on + strand, within B158DRAFT_0669at 672.688 kb on - strand, within B158DRAFT_0669at 672.690 kb on + strand, within B158DRAFT_0669at 672.705 kb on + strand, within B158DRAFT_0669at 672.798 kb on + strandat 672.806 kb on - strandat 672.808 kb on - strandat 672.813 kb on - strandat 672.832 kb on + strandat 672.837 kb on + strandat 672.837 kb on + strandat 672.837 kb on + strandat 672.837 kb on + strandat 672.947 kb on + strandat 672.962 kb on + strandat 672.962 kb on + strandat 672.962 kb on + strandat 672.962 kb on + strandat 672.962 kb on + strandat 672.962 kb on + strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.998 kb on - strand, within B158DRAFT_0670at 673.017 kb on + strand, within B158DRAFT_0670at 673.070 kb on + strand, within B158DRAFT_0670at 673.104 kb on + strand, within B158DRAFT_0670at 673.118 kb on + strand, within B158DRAFT_0670at 673.128 kb on + strand, within B158DRAFT_0670at 673.169 kb on + strand, within B158DRAFT_0670at 673.202 kb on - strand, within B158DRAFT_0670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
670,478 + B158DRAFT_0666 0.41 +0.1
670,550 + B158DRAFT_0666 0.47 +0.2
670,594 + B158DRAFT_0666 0.52 -1.3
670,608 + B158DRAFT_0666 0.53 -0.6
670,642 + B158DRAFT_0666 0.56 +0.2
670,642 + B158DRAFT_0666 0.56 +0.7
670,642 + B158DRAFT_0666 0.56 -0.5
670,642 + B158DRAFT_0666 0.56 -0.4
670,642 + B158DRAFT_0666 0.56 +0.3
670,650 - B158DRAFT_0666 0.57 +0.1
670,650 - B158DRAFT_0666 0.57 +0.3
670,650 - B158DRAFT_0666 0.57 +0.3
670,650 - B158DRAFT_0666 0.57 -0.4
670,650 - B158DRAFT_0666 0.57 -0.5
670,676 + B158DRAFT_0666 0.59 -0.5
670,676 + B158DRAFT_0666 0.59 -0.2
670,676 + B158DRAFT_0666 0.59 -0.0
670,676 + B158DRAFT_0666 0.59 +0.9
670,684 - B158DRAFT_0666 0.60 +0.4
670,684 - B158DRAFT_0666 0.60 -0.2
670,684 - B158DRAFT_0666 0.60 +0.1
670,691 - B158DRAFT_0666 0.61 -0.3
670,696 - B158DRAFT_0666 0.61 +0.2
670,715 + B158DRAFT_0666 0.63 -0.6
670,722 + B158DRAFT_0666 0.64 +0.1
670,730 - B158DRAFT_0666 0.65 -0.0
670,731 + B158DRAFT_0666 0.65 +0.1
670,844 + B158DRAFT_0666 0.75 -0.3
670,852 - B158DRAFT_0666 0.76 -0.2
670,915 - B158DRAFT_0666 0.82 -0.0
670,920 - B158DRAFT_0666 0.83 -0.2
670,989 - B158DRAFT_0666 0.89 +0.0
671,025 + +0.5
671,074 - -0.4
671,084 - -0.1
671,086 + -0.5
671,086 + -0.1
671,086 + -0.5
671,086 + -0.5
671,086 + -0.1
671,086 + -0.1
671,086 + -0.1
671,086 + +0.1
671,086 + +0.3
671,094 - +0.4
671,094 - +0.0
671,094 - -0.0
671,110 + B158DRAFT_0667 0.18 -0.6
671,131 + B158DRAFT_0667 0.25 -1.2
671,144 - B158DRAFT_0667 0.30 -2.3
671,160 + B158DRAFT_0667 0.35 -0.3
671,160 + B158DRAFT_0667 0.35 +0.6
671,202 - B158DRAFT_0667 0.50 +0.2
671,229 - B158DRAFT_0667 0.60 -0.5
671,261 + B158DRAFT_0667 0.71 -0.5
671,485 - -0.3
671,510 + -0.3
671,515 + -1.9
671,523 - -1.9
671,526 + -0.3
671,602 - B158DRAFT_0668 0.16 -0.9
671,651 + B158DRAFT_0668 0.22 -2.5
671,656 + B158DRAFT_0668 0.23 -1.6
671,688 - B158DRAFT_0668 0.27 -1.3
671,694 + B158DRAFT_0668 0.28 +0.7
671,704 + B158DRAFT_0668 0.29 +0.3
671,704 + B158DRAFT_0668 0.29 -2.8
671,712 - B158DRAFT_0668 0.30 -2.5
671,712 - B158DRAFT_0668 0.30 -1.3
671,712 - B158DRAFT_0668 0.30 -3.0
671,712 - B158DRAFT_0668 0.30 -1.9
671,713 - B158DRAFT_0668 0.30 +0.7
671,727 + B158DRAFT_0668 0.32 +0.7
671,764 + B158DRAFT_0668 0.37 -0.9
671,771 - B158DRAFT_0668 0.38 -1.6
671,772 + B158DRAFT_0668 0.38 -0.9
671,777 + B158DRAFT_0668 0.38 -0.3
671,802 - B158DRAFT_0668 0.42 -0.3
671,846 + B158DRAFT_0668 0.47 +0.7
671,913 + B158DRAFT_0668 0.56 -0.9
671,921 - B158DRAFT_0668 0.57 +0.7
671,921 - B158DRAFT_0668 0.57 -0.3
671,928 + B158DRAFT_0668 0.58 -0.9
671,928 - B158DRAFT_0668 0.58 -0.9
671,950 + B158DRAFT_0668 0.60 +0.3
672,057 - B158DRAFT_0668 0.74 -2.1
672,098 + B158DRAFT_0668 0.79 -1.3
672,100 - B158DRAFT_0668 0.80 -1.3
672,104 - B158DRAFT_0668 0.80 +0.7
672,141 + B158DRAFT_0668 0.85 -0.3
672,168 + B158DRAFT_0668 0.88 -0.3
672,235 + -1.4
672,312 - B158DRAFT_0669 0.12 -1.8
672,348 + B158DRAFT_0669 0.17 +0.7
672,368 - B158DRAFT_0669 0.21 -1.3
672,386 + B158DRAFT_0669 0.24 -0.9
672,409 - B158DRAFT_0669 0.27 -2.5
672,466 - B158DRAFT_0669 0.37 -1.6
672,478 + B158DRAFT_0669 0.39 +0.1
672,545 + B158DRAFT_0669 0.50 -0.8
672,545 + B158DRAFT_0669 0.50 -1.9
672,550 + B158DRAFT_0669 0.50 +1.7
672,550 + B158DRAFT_0669 0.50 -0.3
672,550 + B158DRAFT_0669 0.50 -0.8
672,550 + B158DRAFT_0669 0.50 +0.7
672,551 + B158DRAFT_0669 0.51 -0.8
672,553 - B158DRAFT_0669 0.51 -2.9
672,553 - B158DRAFT_0669 0.51 -0.3
672,553 - B158DRAFT_0669 0.51 -1.4
672,558 - B158DRAFT_0669 0.52 -0.3
672,558 - B158DRAFT_0669 0.52 -3.6
672,637 + B158DRAFT_0669 0.65 -2.9
672,637 + B158DRAFT_0669 0.65 -2.3
672,637 + B158DRAFT_0669 0.65 -0.0
672,637 + B158DRAFT_0669 0.65 -0.9
672,637 + B158DRAFT_0669 0.65 -1.6
672,637 + B158DRAFT_0669 0.65 +0.7
672,645 - B158DRAFT_0669 0.66 -1.6
672,645 - B158DRAFT_0669 0.66 -0.3
672,645 - B158DRAFT_0669 0.66 -0.8
672,645 - B158DRAFT_0669 0.66 -0.3
672,645 - B158DRAFT_0669 0.66 -0.9
672,645 - B158DRAFT_0669 0.66 -1.3
672,685 + B158DRAFT_0669 0.73 -0.7
672,688 - B158DRAFT_0669 0.73 -0.3
672,690 + B158DRAFT_0669 0.73 +0.7
672,705 + B158DRAFT_0669 0.76 -0.6
672,798 + -1.3
672,806 - -0.8
672,808 - -1.8
672,813 - +1.7
672,832 + -0.8
672,837 + -0.6
672,837 + -0.3
672,837 + -0.8
672,837 + -1.0
672,947 + +0.7
672,962 + +0.7
672,962 + -3.5
672,962 + +0.7
672,962 + -2.5
672,962 + -3.2
672,962 + +0.7
672,970 - +0.7
672,970 - +0.7
672,970 - +1.0
672,970 - -2.6
672,970 - -0.7
672,970 - -1.1
672,970 - -1.0
672,998 - B158DRAFT_0670 0.12 +0.7
673,017 + B158DRAFT_0670 0.14 -1.3
673,070 + B158DRAFT_0670 0.18 -1.6
673,104 + B158DRAFT_0670 0.21 +0.7
673,118 + B158DRAFT_0670 0.23 -1.1
673,128 + B158DRAFT_0670 0.24 -1.9
673,169 + B158DRAFT_0670 0.27 +1.7
673,202 - B158DRAFT_0670 0.30 -1.1

Or see this region's nucleotide sequence