Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0409

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0407 and B158DRAFT_0408 are separated by 77 nucleotidesB158DRAFT_0408 and B158DRAFT_0409 are separated by 9 nucleotidesB158DRAFT_0409 and B158DRAFT_0410 overlap by 4 nucleotidesB158DRAFT_0410 and B158DRAFT_0411 are separated by 39 nucleotides B158DRAFT_0407: B158DRAFT_0407 - hypothetical protein, at 412,461 to 413,180 _0407 B158DRAFT_0408: B158DRAFT_0408 - Predicted alpha/beta hydrolase, at 413,258 to 414,130 _0408 B158DRAFT_0409: B158DRAFT_0409 - Acyl-CoA hydrolase, at 414,140 to 414,637 _0409 B158DRAFT_0410: B158DRAFT_0410 - hypothetical protein, at 414,634 to 415,329 _0410 B158DRAFT_0411: B158DRAFT_0411 - hypothetical protein, at 415,369 to 415,638 _0411 Position (kb) 414 415Strain fitness (log2 ratio) -2 -1 0 1at 413.143 kb on + strandat 413.195 kb on - strandat 413.214 kb on + strandat 413.260 kb on + strandat 413.260 kb on + strandat 413.260 kb on + strandat 413.268 kb on - strandat 413.291 kb on - strandat 413.300 kb on + strandat 413.309 kb on - strandat 413.309 kb on - strandat 413.320 kb on + strandat 413.323 kb on - strandat 413.328 kb on - strandat 413.328 kb on - strandat 413.333 kb on - strandat 413.390 kb on + strand, within B158DRAFT_0408at 413.495 kb on + strand, within B158DRAFT_0408at 413.515 kb on + strand, within B158DRAFT_0408at 413.515 kb on + strand, within B158DRAFT_0408at 413.515 kb on + strand, within B158DRAFT_0408at 413.515 kb on + strand, within B158DRAFT_0408at 413.515 kb on + strand, within B158DRAFT_0408at 413.523 kb on - strand, within B158DRAFT_0408at 413.523 kb on - strand, within B158DRAFT_0408at 413.523 kb on - strand, within B158DRAFT_0408at 413.531 kb on + strand, within B158DRAFT_0408at 413.534 kb on - strand, within B158DRAFT_0408at 413.571 kb on + strand, within B158DRAFT_0408at 413.597 kb on - strand, within B158DRAFT_0408at 413.667 kb on + strand, within B158DRAFT_0408at 413.721 kb on - strand, within B158DRAFT_0408at 413.744 kb on - strand, within B158DRAFT_0408at 413.744 kb on - strand, within B158DRAFT_0408at 413.796 kb on + strand, within B158DRAFT_0408at 413.804 kb on - strand, within B158DRAFT_0408at 413.827 kb on + strand, within B158DRAFT_0408at 413.863 kb on + strand, within B158DRAFT_0408at 413.868 kb on + strand, within B158DRAFT_0408at 413.868 kb on + strand, within B158DRAFT_0408at 413.967 kb on - strand, within B158DRAFT_0408at 413.969 kb on - strand, within B158DRAFT_0408at 414.055 kb on + strandat 414.101 kb on - strandat 414.136 kb on + strandat 414.144 kb on - strandat 414.205 kb on + strand, within B158DRAFT_0409at 414.317 kb on - strand, within B158DRAFT_0409at 414.358 kb on + strand, within B158DRAFT_0409at 414.385 kb on + strand, within B158DRAFT_0409at 414.443 kb on - strand, within B158DRAFT_0409at 414.457 kb on + strand, within B158DRAFT_0409at 414.582 kb on - strand, within B158DRAFT_0409at 414.752 kb on + strand, within B158DRAFT_0410at 414.760 kb on - strand, within B158DRAFT_0410at 414.760 kb on - strand, within B158DRAFT_0410at 414.926 kb on - strand, within B158DRAFT_0410at 415.192 kb on + strand, within B158DRAFT_0410at 415.207 kb on + strand, within B158DRAFT_0410at 415.215 kb on - strand, within B158DRAFT_0410at 415.270 kb on + strandat 415.427 kb on + strand, within B158DRAFT_0411at 415.428 kb on - strand, within B158DRAFT_0411at 415.432 kb on + strand, within B158DRAFT_0411at 415.433 kb on - strand, within B158DRAFT_0411at 415.433 kb on - strand, within B158DRAFT_0411at 415.438 kb on - strand, within B158DRAFT_0411at 415.454 kb on + strand, within B158DRAFT_0411at 415.576 kb on - strand, within B158DRAFT_0411at 415.607 kb on - strand, within B158DRAFT_0411at 415.607 kb on - strand, within B158DRAFT_0411

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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413,143 + +0.2
413,195 - +0.1
413,214 + -0.4
413,260 + +1.3
413,260 + -0.6
413,260 + -0.8
413,268 - -0.8
413,291 - -0.2
413,300 + -0.1
413,309 - +0.3
413,309 - -0.1
413,320 + +0.5
413,323 - -0.5
413,328 - -0.2
413,328 - -0.4
413,333 - +0.6
413,390 + B158DRAFT_0408 0.15 +0.5
413,495 + B158DRAFT_0408 0.27 -0.1
413,515 + B158DRAFT_0408 0.29 +0.0
413,515 + B158DRAFT_0408 0.29 -0.3
413,515 + B158DRAFT_0408 0.29 +0.5
413,515 + B158DRAFT_0408 0.29 -0.1
413,515 + B158DRAFT_0408 0.29 -0.3
413,523 - B158DRAFT_0408 0.30 -0.1
413,523 - B158DRAFT_0408 0.30 -0.1
413,523 - B158DRAFT_0408 0.30 -0.3
413,531 + B158DRAFT_0408 0.31 -0.2
413,534 - B158DRAFT_0408 0.32 -0.2
413,571 + B158DRAFT_0408 0.36 -0.0
413,597 - B158DRAFT_0408 0.39 +0.6
413,667 + B158DRAFT_0408 0.47 -0.2
413,721 - B158DRAFT_0408 0.53 -0.3
413,744 - B158DRAFT_0408 0.56 +0.1
413,744 - B158DRAFT_0408 0.56 +0.1
413,796 + B158DRAFT_0408 0.62 -0.1
413,804 - B158DRAFT_0408 0.63 +0.1
413,827 + B158DRAFT_0408 0.65 -0.1
413,863 + B158DRAFT_0408 0.69 -0.0
413,868 + B158DRAFT_0408 0.70 -0.2
413,868 + B158DRAFT_0408 0.70 -0.5
413,967 - B158DRAFT_0408 0.81 -0.3
413,969 - B158DRAFT_0408 0.81 -1.0
414,055 + -0.1
414,101 - +0.1
414,136 + -0.6
414,144 - +0.5
414,205 + B158DRAFT_0409 0.13 +0.1
414,317 - B158DRAFT_0409 0.36 -1.1
414,358 + B158DRAFT_0409 0.44 +0.2
414,385 + B158DRAFT_0409 0.49 -0.6
414,443 - B158DRAFT_0409 0.61 -1.9
414,457 + B158DRAFT_0409 0.64 -0.5
414,582 - B158DRAFT_0409 0.89 -0.2
414,752 + B158DRAFT_0410 0.17 +0.3
414,760 - B158DRAFT_0410 0.18 -1.5
414,760 - B158DRAFT_0410 0.18 -0.3
414,926 - B158DRAFT_0410 0.42 +0.0
415,192 + B158DRAFT_0410 0.80 -0.5
415,207 + B158DRAFT_0410 0.82 +0.0
415,215 - B158DRAFT_0410 0.83 +0.2
415,270 + -0.2
415,427 + B158DRAFT_0411 0.21 +0.5
415,428 - B158DRAFT_0411 0.22 +0.0
415,432 + B158DRAFT_0411 0.23 -0.0
415,433 - B158DRAFT_0411 0.24 -0.1
415,433 - B158DRAFT_0411 0.24 +0.7
415,438 - B158DRAFT_0411 0.26 -0.3
415,454 + B158DRAFT_0411 0.31 -0.4
415,576 - B158DRAFT_0411 0.77 -2.0
415,607 - B158DRAFT_0411 0.88 -0.0
415,607 - B158DRAFT_0411 0.88 +0.2

Or see this region's nucleotide sequence