Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS31615

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS31610 and PFLU_RS31615 are separated by 38 nucleotidesPFLU_RS31615 and PFLU_RS30805 are separated by 167 nucleotides PFLU_RS31610: PFLU_RS31610 - putative transporter-like protein, at 3,189,221 to 3,190,654 _RS31610 PFLU_RS31615: PFLU_RS31615 - hypothetical protein, at 3,190,693 to 3,191,925 _RS31615 PFLU_RS30805: PFLU_RS30805 - hypothetical protein, at 3,192,093 to 3,193,088 _RS30805 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3189.711 kb on - strand, within PFLU_RS31610at 3189.712 kb on + strand, within PFLU_RS31610at 3190.100 kb on + strand, within PFLU_RS31610at 3190.226 kb on - strand, within PFLU_RS31610at 3190.289 kb on + strand, within PFLU_RS31610at 3190.290 kb on - strand, within PFLU_RS31610at 3190.290 kb on - strand, within PFLU_RS31610at 3190.290 kb on - strand, within PFLU_RS31610at 3190.313 kb on + strand, within PFLU_RS31610at 3190.373 kb on - strand, within PFLU_RS31610at 3190.453 kb on + strand, within PFLU_RS31610at 3190.745 kb on - strandat 3190.784 kb on - strandat 3190.890 kb on - strand, within PFLU_RS31615at 3190.964 kb on + strand, within PFLU_RS31615at 3190.964 kb on + strand, within PFLU_RS31615at 3191.030 kb on - strand, within PFLU_RS31615at 3191.101 kb on + strand, within PFLU_RS31615at 3191.101 kb on + strand, within PFLU_RS31615at 3191.111 kb on - strand, within PFLU_RS31615at 3191.164 kb on + strand, within PFLU_RS31615at 3191.164 kb on + strand, within PFLU_RS31615at 3191.165 kb on - strand, within PFLU_RS31615at 3191.320 kb on - strand, within PFLU_RS31615at 3191.493 kb on + strand, within PFLU_RS31615at 3191.494 kb on - strand, within PFLU_RS31615at 3191.753 kb on + strand, within PFLU_RS31615at 3191.774 kb on - strand, within PFLU_RS31615at 3191.774 kb on - strand, within PFLU_RS31615at 3191.852 kb on + strandat 3192.258 kb on - strand, within PFLU_RS30805at 3192.348 kb on + strand, within PFLU_RS30805at 3192.372 kb on - strand, within PFLU_RS30805at 3192.419 kb on - strand, within PFLU_RS30805at 3192.444 kb on - strand, within PFLU_RS30805at 3192.474 kb on + strand, within PFLU_RS30805at 3192.474 kb on + strand, within PFLU_RS30805at 3192.531 kb on - strand, within PFLU_RS30805at 3192.609 kb on - strand, within PFLU_RS30805at 3192.624 kb on + strand, within PFLU_RS30805at 3192.795 kb on - strand, within PFLU_RS30805at 3192.920 kb on - strand, within PFLU_RS30805

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,189,711 - PFLU_RS31610 0.34 +1.4
3,189,712 + PFLU_RS31610 0.34 +0.1
3,190,100 + PFLU_RS31610 0.61 +1.3
3,190,226 - PFLU_RS31610 0.70 +0.6
3,190,289 + PFLU_RS31610 0.74 +0.7
3,190,290 - PFLU_RS31610 0.75 -0.5
3,190,290 - PFLU_RS31610 0.75 +0.1
3,190,290 - PFLU_RS31610 0.75 -0.1
3,190,313 + PFLU_RS31610 0.76 -2.8
3,190,373 - PFLU_RS31610 0.80 +0.5
3,190,453 + PFLU_RS31610 0.86 +0.5
3,190,745 - -0.1
3,190,784 - +1.3
3,190,890 - PFLU_RS31615 0.16 -1.1
3,190,964 + PFLU_RS31615 0.22 +1.0
3,190,964 + PFLU_RS31615 0.22 -1.8
3,191,030 - PFLU_RS31615 0.27 +0.3
3,191,101 + PFLU_RS31615 0.33 +0.7
3,191,101 + PFLU_RS31615 0.33 -1.3
3,191,111 - PFLU_RS31615 0.34 -0.2
3,191,164 + PFLU_RS31615 0.38 +0.1
3,191,164 + PFLU_RS31615 0.38 +0.7
3,191,165 - PFLU_RS31615 0.38 +0.2
3,191,320 - PFLU_RS31615 0.51 +0.2
3,191,493 + PFLU_RS31615 0.65 -1.0
3,191,494 - PFLU_RS31615 0.65 -0.2
3,191,753 + PFLU_RS31615 0.86 -0.6
3,191,774 - PFLU_RS31615 0.88 +0.5
3,191,774 - PFLU_RS31615 0.88 +0.2
3,191,852 + -0.1
3,192,258 - PFLU_RS30805 0.17 -3.8
3,192,348 + PFLU_RS30805 0.26 +0.4
3,192,372 - PFLU_RS30805 0.28 +0.4
3,192,419 - PFLU_RS30805 0.33 -0.8
3,192,444 - PFLU_RS30805 0.35 -0.5
3,192,474 + PFLU_RS30805 0.38 -0.6
3,192,474 + PFLU_RS30805 0.38 +0.0
3,192,531 - PFLU_RS30805 0.44 +1.5
3,192,609 - PFLU_RS30805 0.52 +0.5
3,192,624 + PFLU_RS30805 0.53 +0.5
3,192,795 - PFLU_RS30805 0.70 -1.3
3,192,920 - PFLU_RS30805 0.83 +0.3

Or see this region's nucleotide sequence