Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28020

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS28015 and PFLU_RS28020 are separated by 82 nucleotidesPFLU_RS28020 and PFLU_RS28025 are separated by 198 nucleotides PFLU_RS28015: PFLU_RS28015 - DHA2 family efflux MFS transporter permease subunit, at 6,238,627 to 6,240,054 _RS28015 PFLU_RS28020: PFLU_RS28020 - ATP-dependent RNA helicase DbpA, at 6,240,137 to 6,241,522 _RS28020 PFLU_RS28025: PFLU_RS28025 - NAD(P)/FAD-dependent oxidoreductase, at 6,241,721 to 6,242,899 _RS28025 Position (kb) 6240 6241 6242Strain fitness (log2 ratio) -1 0 1 2at 6239.173 kb on + strand, within PFLU_RS28015at 6239.173 kb on + strand, within PFLU_RS28015at 6239.174 kb on - strand, within PFLU_RS28015at 6239.202 kb on - strand, within PFLU_RS28015at 6239.202 kb on - strand, within PFLU_RS28015at 6239.890 kb on - strand, within PFLU_RS28015at 6239.915 kb on + strandat 6239.916 kb on - strandat 6239.957 kb on + strandat 6239.957 kb on + strandat 6239.958 kb on - strandat 6240.068 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.100 kb on + strandat 6240.101 kb on - strandat 6240.143 kb on - strandat 6240.160 kb on + strandat 6240.160 kb on + strandat 6240.163 kb on + strandat 6240.163 kb on + strandat 6240.164 kb on - strandat 6240.164 kb on - strandat 6240.212 kb on + strandat 6240.212 kb on + strandat 6240.212 kb on + strandat 6240.212 kb on - strandat 6240.213 kb on - strandat 6240.213 kb on - strandat 6240.213 kb on - strandat 6240.350 kb on + strand, within PFLU_RS28020at 6240.350 kb on + strand, within PFLU_RS28020at 6240.351 kb on - strand, within PFLU_RS28020at 6240.587 kb on - strand, within PFLU_RS28020at 6240.635 kb on + strand, within PFLU_RS28020at 6240.635 kb on + strand, within PFLU_RS28020at 6240.635 kb on + strand, within PFLU_RS28020at 6240.636 kb on - strand, within PFLU_RS28020at 6240.636 kb on - strand, within PFLU_RS28020at 6240.636 kb on - strand, within PFLU_RS28020at 6240.806 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.940 kb on + strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.941 kb on - strand, within PFLU_RS28020at 6240.993 kb on + strand, within PFLU_RS28020at 6241.325 kb on - strand, within PFLU_RS28020at 6241.520 kb on + strandat 6241.628 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.660 kb on + strandat 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.882 kb on + strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.883 kb on - strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.886 kb on + strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.887 kb on - strand, within PFLU_RS28025at 6241.930 kb on + strand, within PFLU_RS28025at 6242.295 kb on + strand, within PFLU_RS28025at 6242.348 kb on - strand, within PFLU_RS28025at 6242.454 kb on - strand, within PFLU_RS28025at 6242.454 kb on - strand, within PFLU_RS28025at 6242.454 kb on - strand, within PFLU_RS28025

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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6,239,173 + PFLU_RS28015 0.38 +0.7
6,239,173 + PFLU_RS28015 0.38 -1.3
6,239,174 - PFLU_RS28015 0.38 -0.3
6,239,202 - PFLU_RS28015 0.40 +0.4
6,239,202 - PFLU_RS28015 0.40 +0.8
6,239,890 - PFLU_RS28015 0.88 +0.4
6,239,915 + +0.8
6,239,916 - -0.9
6,239,957 + -0.1
6,239,957 + -0.8
6,239,958 - +1.3
6,240,068 + -0.5
6,240,100 + +0.1
6,240,100 + +0.2
6,240,100 + +0.3
6,240,101 - -1.3
6,240,143 - +0.7
6,240,160 + +0.1
6,240,160 + -1.0
6,240,163 + -0.7
6,240,163 + -0.0
6,240,164 - -0.3
6,240,164 - -0.2
6,240,212 + +0.4
6,240,212 + -0.2
6,240,212 + -1.2
6,240,212 - -0.8
6,240,213 - -0.7
6,240,213 - -0.0
6,240,213 - +1.0
6,240,350 + PFLU_RS28020 0.15 -1.4
6,240,350 + PFLU_RS28020 0.15 -1.7
6,240,351 - PFLU_RS28020 0.15 -0.7
6,240,587 - PFLU_RS28020 0.32 +0.4
6,240,635 + PFLU_RS28020 0.36 +0.8
6,240,635 + PFLU_RS28020 0.36 -0.4
6,240,635 + PFLU_RS28020 0.36 -0.2
6,240,636 - PFLU_RS28020 0.36 -1.0
6,240,636 - PFLU_RS28020 0.36 -0.9
6,240,636 - PFLU_RS28020 0.36 -1.6
6,240,806 + PFLU_RS28020 0.48 -0.2
6,240,940 + PFLU_RS28020 0.58 -0.3
6,240,940 + PFLU_RS28020 0.58 -0.5
6,240,940 + PFLU_RS28020 0.58 -1.2
6,240,940 + PFLU_RS28020 0.58 -0.3
6,240,941 - PFLU_RS28020 0.58 -0.4
6,240,941 - PFLU_RS28020 0.58 +0.3
6,240,941 - PFLU_RS28020 0.58 -0.8
6,240,993 + PFLU_RS28020 0.62 -0.4
6,241,325 - PFLU_RS28020 0.86 -1.0
6,241,520 + +0.3
6,241,628 + +2.2
6,241,660 + +0.3
6,241,660 + +0.3
6,241,660 + +0.3
6,241,660 + -0.6
6,241,660 + +0.1
6,241,660 + -0.2
6,241,882 + PFLU_RS28025 0.14 +0.9
6,241,882 + PFLU_RS28025 0.14 +1.1
6,241,882 + PFLU_RS28025 0.14 -0.0
6,241,882 + PFLU_RS28025 0.14 +0.1
6,241,882 + PFLU_RS28025 0.14 +1.4
6,241,882 + PFLU_RS28025 0.14 +0.7
6,241,882 + PFLU_RS28025 0.14 +0.7
6,241,882 + PFLU_RS28025 0.14 +0.7
6,241,882 + PFLU_RS28025 0.14 +0.8
6,241,883 - PFLU_RS28025 0.14 -0.4
6,241,883 - PFLU_RS28025 0.14 +0.3
6,241,883 - PFLU_RS28025 0.14 -1.7
6,241,883 - PFLU_RS28025 0.14 +0.4
6,241,883 - PFLU_RS28025 0.14 -0.6
6,241,883 - PFLU_RS28025 0.14 -1.1
6,241,883 - PFLU_RS28025 0.14 +0.6
6,241,883 - PFLU_RS28025 0.14 -0.6
6,241,883 - PFLU_RS28025 0.14 +0.2
6,241,883 - PFLU_RS28025 0.14 +0.4
6,241,883 - PFLU_RS28025 0.14 -0.2
6,241,883 - PFLU_RS28025 0.14 -0.0
6,241,883 - PFLU_RS28025 0.14 +0.5
6,241,883 - PFLU_RS28025 0.14 -0.1
6,241,883 - PFLU_RS28025 0.14 -0.4
6,241,886 + PFLU_RS28025 0.14 +0.5
6,241,886 + PFLU_RS28025 0.14 +0.4
6,241,886 + PFLU_RS28025 0.14 +0.3
6,241,886 + PFLU_RS28025 0.14 +0.0
6,241,886 + PFLU_RS28025 0.14 +0.6
6,241,886 + PFLU_RS28025 0.14 +0.6
6,241,887 - PFLU_RS28025 0.14 -0.2
6,241,887 - PFLU_RS28025 0.14 +0.5
6,241,887 - PFLU_RS28025 0.14 -1.6
6,241,887 - PFLU_RS28025 0.14 +0.8
6,241,930 + PFLU_RS28025 0.18 +1.0
6,242,295 + PFLU_RS28025 0.49 +0.9
6,242,348 - PFLU_RS28025 0.53 +1.1
6,242,454 - PFLU_RS28025 0.62 +0.3
6,242,454 - PFLU_RS28025 0.62 +1.0
6,242,454 - PFLU_RS28025 0.62 -0.7

Or see this region's nucleotide sequence