Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25585

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
5,706,742	+		PFLU_RS25575	0.72	+1.4
5,706,742	+		PFLU_RS25575	0.72	+0.3
5,706,743	-		PFLU_RS25575	0.72	-0.2
5,706,743	-		PFLU_RS25575	0.72	+0.6
5,706,743	-		PFLU_RS25575	0.72	+0.7
5,706,743	-		PFLU_RS25575	0.72	+0.3
5,706,924	+		PFLU_RS25575	0.86	-0.9
5,706,924	+		PFLU_RS25575	0.86	+0.0
5,706,924	+		PFLU_RS25575	0.86	+0.5
5,706,924	+		PFLU_RS25575	0.86	+0.4
5,706,924	+		PFLU_RS25575	0.86	+0.7
5,706,924	+		PFLU_RS25575	0.86	+0.6
5,706,925	-		PFLU_RS25575	0.86	+0.8
5,706,925	-		PFLU_RS25575	0.86	+0.7
5,706,925	-		PFLU_RS25575	0.86	-0.3
5,706,925	-		PFLU_RS25575	0.86	-0.2
5,706,925	-		PFLU_RS25575	0.86	+0.5
5,706,925	-		PFLU_RS25575	0.86	+0.8
5,706,966	+		PFLU_RS25575	0.90	+0.7
5,706,966	+		PFLU_RS25575	0.90	+1.0
5,706,966	+		PFLU_RS25575	0.90	-0.3
5,706,966	+		PFLU_RS25575	0.90	-0.5
5,706,966	+		PFLU_RS25575	0.90	+0.8
5,706,966	+		PFLU_RS25575	0.90	-0.2
5,706,967	-		PFLU_RS25575	0.90	+0.3
5,706,967	-		PFLU_RS25575	0.90	-0.5
5,706,967	-		PFLU_RS25575	0.90	+0.4
5,707,328	+		PFLU_RS25580	0.41	+0.6
5,707,328	+		PFLU_RS25580	0.41	+1.0
5,707,328	+		PFLU_RS25580	0.41	+1.0
5,707,328	+		PFLU_RS25580	0.41	+0.6
5,707,328	+		PFLU_RS25580	0.41	+0.3
5,707,329	-		PFLU_RS25580	0.41	-0.8
5,707,329	-		PFLU_RS25580	0.41	-0.5
5,707,329	-		PFLU_RS25580	0.41	-1.5
5,707,329	-		PFLU_RS25580	0.41	-2.2
5,707,455	+		PFLU_RS25580	0.63	-0.9
5,707,455	+		PFLU_RS25580	0.63	-1.5
5,707,455	+		PFLU_RS25580	0.63	+0.4
5,707,455	+		PFLU_RS25580	0.63	+0.3
5,707,456	-		PFLU_RS25580	0.63	-0.7
5,707,456	-		PFLU_RS25580	0.63	+0.4
5,707,496	+		PFLU_RS25580	0.70	-0.5
5,707,496	+		PFLU_RS25580	0.70	-3.0
5,707,673	+				+0.7
5,707,673	+				-0.6
5,707,724	-				+0.3
5,707,724	-				-0.2
5,707,724	-				-1.4
5,707,856	+				-0.8
5,707,856	+				-0.6
5,707,857	-				-1.0
5,707,857	-				-0.4
5,707,857	-				-1.2
5,707,857	-				-1.3
5,707,955	+		PFLU_RS25585	0.13	-0.6
5,707,955	+		PFLU_RS25585	0.13	-1.1
5,707,956	-		PFLU_RS25585	0.13	-0.6
5,707,956	-		PFLU_RS25585	0.13	-0.3
5,708,020	-		PFLU_RS25585	0.16	+0.2
5,708,020	-		PFLU_RS25585	0.16	-0.3
5,708,150	+		PFLU_RS25585	0.22	-1.1
5,708,150	+		PFLU_RS25585	0.22	-1.6
5,708,363	+		PFLU_RS25585	0.33	-1.4
5,708,363	+		PFLU_RS25585	0.33	-0.8
5,708,363	+		PFLU_RS25585	0.33	-0.4
5,708,364	-		PFLU_RS25585	0.33	-0.7
5,708,364	-		PFLU_RS25585	0.33	+0.0
5,708,364	-		PFLU_RS25585	0.33	-1.6
5,708,364	-		PFLU_RS25585	0.33	-2.3
5,708,364	-		PFLU_RS25585	0.33	+0.4
5,708,367	-		PFLU_RS25585	0.33	+0.0
5,708,367	-		PFLU_RS25585	0.33	-1.2
5,708,469	+		PFLU_RS25585	0.38	-1.6
5,708,470	-		PFLU_RS25585	0.38	-1.3
5,708,567	+		PFLU_RS25585	0.42	-2.3
5,708,688	-		PFLU_RS25585	0.48	-1.6
5,708,688	-		PFLU_RS25585	0.48	-2.3
5,708,688	-		PFLU_RS25585	0.48	-0.5
5,708,725	+		PFLU_RS25585	0.50	-1.7
5,708,771	-		PFLU_RS25585	0.52	-1.2
5,708,771	-		PFLU_RS25585	0.52	-1.2
5,708,774	-		PFLU_RS25585	0.52	-0.7
5,709,095	-		PFLU_RS25585	0.67	-1.8
5,709,095	-		PFLU_RS25585	0.67	-1.1
5,709,095	-		PFLU_RS25585	0.67	-1.1
5,709,344	+		PFLU_RS25585	0.79	-1.1
5,709,345	-		PFLU_RS25585	0.79	+0.2
5,709,345	-		PFLU_RS25585	0.79	-1.4
5,709,619	+				-1.3
5,709,620	-				+1.0
5,709,620	-				-1.3
5,709,783	+				-0.4
5,709,783	+				-1.6
5,709,783	+				+1.0
5,709,784	-				-0.2
5,709,784	-				+0.5
5,709,784	-				-0.5
5,709,784	-				+0.5
5,709,890	-				+0.1
5,709,890	-				-1.1
5,709,931	+				-1.5
5,709,931	+				-1.5
5,709,932	-				+0.5
5,709,932	-				-1.0
5,709,958	+				+0.6
5,709,958	+				-0.3
5,709,958	+				-1.1
5,709,959	-				-0.6
5,709,964	+				-1.1
5,709,965	-				-1.3
5,710,009	+				-1.3
5,710,010	-				-0.4
5,710,018	+				-1.4
5,710,018	+				-0.6
5,710,018	+				-0.5
5,710,018	+				-1.2
5,710,018	+				-0.7
5,710,018	+				+0.7
5,710,018	+				-2.2
5,710,019	-				-2.2
5,710,019	-				-1.8
5,710,019	-				-1.1
5,710,019	-				-1.0
5,710,019	-				+0.4
5,710,019	-				-1.6
5,710,073	-				-0.7
5,710,108	+				+0.5
5,710,108	+				-0.8
5,710,120	+				-0.3
5,710,120	+				-1.1
5,710,120	+				-0.8
5,710,120	+				-0.6
5,710,120	+				-1.4
5,710,121	-				-0.5
5,710,121	-				-2.5
5,710,121	-				-1.5
5,710,121	-				-1.8
5,710,121	-				-1.0
5,710,154	+		PFLU_RS25590	0.10	-0.7
5,710,169	+		PFLU_RS25590	0.11	-1.6
5,710,169	+		PFLU_RS25590	0.11	-0.8
5,710,170	-		PFLU_RS25590	0.11	-1.3
5,710,170	-		PFLU_RS25590	0.11	+1.3
5,710,222	+		PFLU_RS25590	0.12	-0.7
5,710,223	-		PFLU_RS25590	0.12	-1.0
5,710,223	-		PFLU_RS25590	0.12	-1.6
5,710,223	-		PFLU_RS25590	0.12	-1.6
5,710,251	+		PFLU_RS25590	0.13	-1.7
5,710,251	+		PFLU_RS25590	0.13	-1.6
5,710,251	+		PFLU_RS25590	0.13	-1.3
5,710,251	+		PFLU_RS25590	0.13	-1.8
5,710,297	+		PFLU_RS25590	0.14	-0.4
5,710,298	-		PFLU_RS25590	0.14	-0.8
5,710,298	-		PFLU_RS25590	0.14	-1.8
5,710,404	-		PFLU_RS25590	0.17	-0.8
5,710,672	+		PFLU_RS25590	0.24	-0.6
5,710,673	-		PFLU_RS25590	0.24	-0.4
5,710,673	-		PFLU_RS25590	0.24	+0.5