Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS21655 and PFLU_RS21660 are separated by 155 nucleotides PFLU_RS21660 and PFLU_RS21665 overlap by 4 nucleotides PFLU_RS21665 and PFLU_RS21670 are separated by 105 nucleotides
PFLU_RS21655: PFLU_RS21655 - response regulator, at 4,881,252 to 4,881,638
_RS21655
PFLU_RS21660: PFLU_RS21660 - RNA polymerase sigma factor FliA, at 4,881,794 to 4,882,534
_RS21660
PFLU_RS21665: PFLU_RS21665 - MinD/ParA family protein, at 4,882,531 to 4,883,364
_RS21665
PFLU_RS21670: PFLU_RS21670 - flagellar biosynthesis protein FlhF, at 4,883,470 to 4,884,786
_RS21670
Position (kb) 4882
4883
4884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4881.659 kb on - strand at 4881.659 kb on - strand at 4881.703 kb on + strand at 4881.703 kb on + strand at 4881.703 kb on + strand at 4881.703 kb on + strand at 4881.704 kb on - strand at 4881.704 kb on - strand at 4881.704 kb on - strand at 4881.921 kb on + strand, within PFLU_RS21660 at 4881.921 kb on + strand, within PFLU_RS21660 at 4881.921 kb on + strand, within PFLU_RS21660 at 4881.922 kb on - strand, within PFLU_RS21660 at 4881.922 kb on - strand, within PFLU_RS21660 at 4881.924 kb on + strand, within PFLU_RS21660 at 4881.924 kb on + strand, within PFLU_RS21660 at 4881.925 kb on - strand, within PFLU_RS21660 at 4881.925 kb on - strand, within PFLU_RS21660 at 4881.925 kb on - strand, within PFLU_RS21660 at 4881.925 kb on - strand, within PFLU_RS21660 at 4881.925 kb on - strand, within PFLU_RS21660 at 4882.024 kb on + strand, within PFLU_RS21660 at 4882.025 kb on - strand, within PFLU_RS21660 at 4882.025 kb on - strand, within PFLU_RS21660 at 4882.025 kb on - strand, within PFLU_RS21660 at 4882.112 kb on - strand, within PFLU_RS21660 at 4882.112 kb on - strand, within PFLU_RS21660 at 4882.129 kb on - strand, within PFLU_RS21660 at 4882.131 kb on + strand, within PFLU_RS21660 at 4882.131 kb on + strand, within PFLU_RS21660 at 4882.132 kb on - strand, within PFLU_RS21660 at 4882.177 kb on + strand, within PFLU_RS21660 at 4882.234 kb on + strand, within PFLU_RS21660 at 4882.270 kb on + strand, within PFLU_RS21660 at 4882.271 kb on - strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.314 kb on + strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.315 kb on - strand, within PFLU_RS21660 at 4882.347 kb on + strand, within PFLU_RS21660 at 4882.348 kb on - strand, within PFLU_RS21660 at 4882.348 kb on - strand, within PFLU_RS21660 at 4882.348 kb on - strand, within PFLU_RS21660 at 4882.438 kb on - strand, within PFLU_RS21660 at 4882.438 kb on - strand, within PFLU_RS21660 at 4882.438 kb on - strand, within PFLU_RS21660 at 4882.464 kb on + strand at 4882.518 kb on + strand at 4882.519 kb on - strand at 4882.534 kb on + strand at 4882.534 kb on + strand at 4882.534 kb on + strand at 4882.534 kb on + strand at 4882.534 kb on + strand at 4882.534 kb on + strand at 4882.535 kb on - strand at 4882.535 kb on - strand at 4882.535 kb on - strand at 4882.535 kb on - strand at 4882.620 kb on + strand, within PFLU_RS21665 at 4882.620 kb on + strand, within PFLU_RS21665 at 4882.638 kb on + strand, within PFLU_RS21665 at 4882.638 kb on + strand, within PFLU_RS21665 at 4882.638 kb on + strand, within PFLU_RS21665 at 4882.682 kb on + strand, within PFLU_RS21665 at 4882.682 kb on + strand, within PFLU_RS21665 at 4882.683 kb on - strand, within PFLU_RS21665 at 4882.745 kb on + strand, within PFLU_RS21665 at 4882.745 kb on + strand, within PFLU_RS21665 at 4882.745 kb on + strand, within PFLU_RS21665 at 4882.745 kb on + strand, within PFLU_RS21665 at 4882.745 kb on + strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.746 kb on - strand, within PFLU_RS21665 at 4882.750 kb on + strand, within PFLU_RS21665 at 4882.750 kb on + strand, within PFLU_RS21665 at 4882.750 kb on + strand, within PFLU_RS21665 at 4882.751 kb on - strand, within PFLU_RS21665 at 4882.751 kb on - strand, within PFLU_RS21665 at 4882.751 kb on - strand, within PFLU_RS21665 at 4882.751 kb on - strand, within PFLU_RS21665 at 4882.751 kb on - strand, within PFLU_RS21665 at 4882.862 kb on + strand, within PFLU_RS21665 at 4882.863 kb on - strand, within PFLU_RS21665 at 4882.893 kb on - strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.936 kb on + strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4882.937 kb on - strand, within PFLU_RS21665 at 4883.025 kb on + strand, within PFLU_RS21665 at 4883.298 kb on + strand at 4883.298 kb on + strand at 4883.299 kb on - strand at 4883.299 kb on - strand at 4883.299 kb on - strand at 4883.376 kb on - strand at 4883.376 kb on - strand at 4883.390 kb on - strand at 4883.390 kb on - strand at 4883.400 kb on + strand at 4883.400 kb on + strand at 4883.401 kb on - strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.441 kb on + strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.442 kb on - strand at 4883.445 kb on + strand at 4883.445 kb on + strand at 4883.446 kb on - strand at 4883.446 kb on - strand at 4883.446 kb on - strand at 4883.514 kb on + strand at 4883.514 kb on + strand at 4883.514 kb on + strand at 4883.535 kb on + strand at 4883.738 kb on + strand, within PFLU_RS21670 at 4883.738 kb on + strand, within PFLU_RS21670 at 4883.738 kb on + strand, within PFLU_RS21670 at 4883.738 kb on + strand, within PFLU_RS21670 at 4883.739 kb on - strand, within PFLU_RS21670 at 4883.739 kb on - strand, within PFLU_RS21670 at 4883.739 kb on - strand, within PFLU_RS21670 at 4883.739 kb on - strand, within PFLU_RS21670 at 4883.747 kb on + strand, within PFLU_RS21670 at 4883.796 kb on - strand, within PFLU_RS21670 at 4883.959 kb on + strand, within PFLU_RS21670 at 4883.959 kb on + strand, within PFLU_RS21670 at 4883.959 kb on + strand, within PFLU_RS21670 at 4883.960 kb on - strand, within PFLU_RS21670 at 4883.960 kb on - strand, within PFLU_RS21670 at 4883.960 kb on - strand, within PFLU_RS21670 at 4884.050 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.062 kb on + strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670 at 4884.063 kb on - strand, within PFLU_RS21670
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,881,659 - -0.1 4,881,659 - +0.2 4,881,703 + -1.2 4,881,703 + +0.8 4,881,703 + +0.5 4,881,703 + -0.4 4,881,704 - +0.6 4,881,704 - -0.6 4,881,704 - -0.7 4,881,921 + PFLU_RS21660 0.17 +0.7 4,881,921 + PFLU_RS21660 0.17 +1.2 4,881,921 + PFLU_RS21660 0.17 +0.5 4,881,922 - PFLU_RS21660 0.17 +1.1 4,881,922 - PFLU_RS21660 0.17 +1.3 4,881,924 + PFLU_RS21660 0.18 +2.2 4,881,924 + PFLU_RS21660 0.18 +1.7 4,881,925 - PFLU_RS21660 0.18 +1.2 4,881,925 - PFLU_RS21660 0.18 +2.3 4,881,925 - PFLU_RS21660 0.18 +1.9 4,881,925 - PFLU_RS21660 0.18 +1.3 4,881,925 - PFLU_RS21660 0.18 +1.3 4,882,024 + PFLU_RS21660 0.31 +1.7 4,882,025 - PFLU_RS21660 0.31 +1.0 4,882,025 - PFLU_RS21660 0.31 +1.1 4,882,025 - PFLU_RS21660 0.31 +0.7 4,882,112 - PFLU_RS21660 0.43 +0.3 4,882,112 - PFLU_RS21660 0.43 +1.2 4,882,129 - PFLU_RS21660 0.45 +1.8 4,882,131 + PFLU_RS21660 0.45 +1.6 4,882,131 + PFLU_RS21660 0.45 +1.4 4,882,132 - PFLU_RS21660 0.46 +1.4 4,882,177 + PFLU_RS21660 0.52 +2.4 4,882,234 + PFLU_RS21660 0.59 +1.2 4,882,270 + PFLU_RS21660 0.64 +1.2 4,882,271 - PFLU_RS21660 0.64 +0.9 4,882,314 + PFLU_RS21660 0.70 +1.6 4,882,314 + PFLU_RS21660 0.70 +0.7 4,882,314 + PFLU_RS21660 0.70 +2.3 4,882,314 + PFLU_RS21660 0.70 +1.7 4,882,314 + PFLU_RS21660 0.70 +1.1 4,882,314 + PFLU_RS21660 0.70 +1.2 4,882,314 + PFLU_RS21660 0.70 +1.3 4,882,314 + PFLU_RS21660 0.70 +2.2 4,882,314 + PFLU_RS21660 0.70 +1.0 4,882,314 + PFLU_RS21660 0.70 +1.4 4,882,315 - PFLU_RS21660 0.70 +1.5 4,882,315 - PFLU_RS21660 0.70 +1.1 4,882,315 - PFLU_RS21660 0.70 +2.2 4,882,315 - PFLU_RS21660 0.70 +1.7 4,882,315 - PFLU_RS21660 0.70 +1.8 4,882,315 - PFLU_RS21660 0.70 -2.4 4,882,315 - PFLU_RS21660 0.70 +1.7 4,882,315 - PFLU_RS21660 0.70 +1.9 4,882,315 - PFLU_RS21660 0.70 +1.9 4,882,315 - PFLU_RS21660 0.70 +1.2 4,882,347 + PFLU_RS21660 0.75 +2.1 4,882,348 - PFLU_RS21660 0.75 +1.8 4,882,348 - PFLU_RS21660 0.75 +1.5 4,882,348 - PFLU_RS21660 0.75 +1.6 4,882,438 - PFLU_RS21660 0.87 +1.3 4,882,438 - PFLU_RS21660 0.87 +1.1 4,882,438 - PFLU_RS21660 0.87 +1.5 4,882,464 + +1.6 4,882,518 + +2.1 4,882,519 - +1.1 4,882,534 + -1.4 4,882,534 + -0.2 4,882,534 + -1.3 4,882,534 + +0.8 4,882,534 + +1.2 4,882,534 + -1.1 4,882,535 - +1.4 4,882,535 - +1.3 4,882,535 - -0.1 4,882,535 - +0.2 4,882,620 + PFLU_RS21665 0.11 -0.8 4,882,620 + PFLU_RS21665 0.11 +0.9 4,882,638 + PFLU_RS21665 0.13 -0.7 4,882,638 + PFLU_RS21665 0.13 -0.3 4,882,638 + PFLU_RS21665 0.13 +0.7 4,882,682 + PFLU_RS21665 0.18 -0.9 4,882,682 + PFLU_RS21665 0.18 +0.3 4,882,683 - PFLU_RS21665 0.18 -1.0 4,882,745 + PFLU_RS21665 0.26 -0.6 4,882,745 + PFLU_RS21665 0.26 -2.2 4,882,745 + PFLU_RS21665 0.26 -1.5 4,882,745 + PFLU_RS21665 0.26 +1.2 4,882,745 + PFLU_RS21665 0.26 -2.1 4,882,746 - PFLU_RS21665 0.26 -1.4 4,882,746 - PFLU_RS21665 0.26 -2.4 4,882,746 - PFLU_RS21665 0.26 -3.2 4,882,746 - PFLU_RS21665 0.26 -2.2 4,882,746 - PFLU_RS21665 0.26 -0.7 4,882,746 - PFLU_RS21665 0.26 -3.5 4,882,746 - PFLU_RS21665 0.26 -1.3 4,882,746 - PFLU_RS21665 0.26 -2.2 4,882,746 - PFLU_RS21665 0.26 -1.2 4,882,746 - PFLU_RS21665 0.26 -3.1 4,882,750 + PFLU_RS21665 0.26 -1.5 4,882,750 + PFLU_RS21665 0.26 -0.8 4,882,750 + PFLU_RS21665 0.26 -0.1 4,882,751 - PFLU_RS21665 0.26 -2.3 4,882,751 - PFLU_RS21665 0.26 -1.1 4,882,751 - PFLU_RS21665 0.26 -2.2 4,882,751 - PFLU_RS21665 0.26 -2.3 4,882,751 - PFLU_RS21665 0.26 -1.1 4,882,862 + PFLU_RS21665 0.40 +0.2 4,882,863 - PFLU_RS21665 0.40 -3.3 4,882,893 - PFLU_RS21665 0.43 -2.0 4,882,936 + PFLU_RS21665 0.49 +0.6 4,882,936 + PFLU_RS21665 0.49 -2.5 4,882,936 + PFLU_RS21665 0.49 -1.7 4,882,936 + PFLU_RS21665 0.49 -1.6 4,882,936 + PFLU_RS21665 0.49 -0.1 4,882,936 + PFLU_RS21665 0.49 -1.6 4,882,936 + PFLU_RS21665 0.49 -1.2 4,882,936 + PFLU_RS21665 0.49 -2.4 4,882,936 + PFLU_RS21665 0.49 -0.6 4,882,936 + PFLU_RS21665 0.49 -0.2 4,882,937 - PFLU_RS21665 0.49 -1.3 4,882,937 - PFLU_RS21665 0.49 -3.2 4,882,937 - PFLU_RS21665 0.49 -2.6 4,882,937 - PFLU_RS21665 0.49 -3.0 4,882,937 - PFLU_RS21665 0.49 -0.2 4,882,937 - PFLU_RS21665 0.49 -1.7 4,882,937 - PFLU_RS21665 0.49 -2.8 4,882,937 - PFLU_RS21665 0.49 -1.0 4,882,937 - PFLU_RS21665 0.49 -2.5 4,883,025 + PFLU_RS21665 0.59 -1.2 4,883,298 + -0.5 4,883,298 + -1.3 4,883,299 - -0.8 4,883,299 - -1.5 4,883,299 - -0.7 4,883,376 - -1.4 4,883,376 - -3.9 4,883,390 - +0.6 4,883,390 - -0.3 4,883,400 + +0.1 4,883,400 + -0.3 4,883,401 - -1.1 4,883,441 + +0.2 4,883,441 + -0.8 4,883,441 + -1.6 4,883,441 + -1.9 4,883,441 + -1.7 4,883,441 + -0.6 4,883,441 + -1.5 4,883,441 + -1.5 4,883,442 - +1.0 4,883,442 - -0.8 4,883,442 - +0.4 4,883,442 - +0.0 4,883,442 - +0.6 4,883,442 - +0.5 4,883,442 - +0.6 4,883,442 - +0.9 4,883,442 - -1.2 4,883,442 - -0.7 4,883,445 + -1.2 4,883,445 + +0.2 4,883,446 - +1.3 4,883,446 - +0.6 4,883,446 - +1.4 4,883,514 + -0.7 4,883,514 + -2.4 4,883,514 + -2.1 4,883,535 + -0.2 4,883,738 + PFLU_RS21670 0.20 -2.5 4,883,738 + PFLU_RS21670 0.20 -1.6 4,883,738 + PFLU_RS21670 0.20 -1.3 4,883,738 + PFLU_RS21670 0.20 -0.2 4,883,739 - PFLU_RS21670 0.20 +1.1 4,883,739 - PFLU_RS21670 0.20 +1.4 4,883,739 - PFLU_RS21670 0.20 +1.6 4,883,739 - PFLU_RS21670 0.20 +2.1 4,883,747 + PFLU_RS21670 0.21 -0.6 4,883,796 - PFLU_RS21670 0.25 -0.4 4,883,959 + PFLU_RS21670 0.37 -1.1 4,883,959 + PFLU_RS21670 0.37 -1.8 4,883,959 + PFLU_RS21670 0.37 +0.2 4,883,960 - PFLU_RS21670 0.37 +0.9 4,883,960 - PFLU_RS21670 0.37 +1.3 4,883,960 - PFLU_RS21670 0.37 +1.8 4,884,050 + PFLU_RS21670 0.44 -0.7 4,884,062 + PFLU_RS21670 0.45 +0.1 4,884,062 + PFLU_RS21670 0.45 -1.9 4,884,062 + PFLU_RS21670 0.45 -2.0 4,884,062 + PFLU_RS21670 0.45 +0.4 4,884,062 + PFLU_RS21670 0.45 -1.3 4,884,062 + PFLU_RS21670 0.45 -0.4 4,884,062 + PFLU_RS21670 0.45 -1.9 4,884,062 + PFLU_RS21670 0.45 -0.5 4,884,062 + PFLU_RS21670 0.45 -1.5 4,884,062 + PFLU_RS21670 0.45 -0.1 4,884,063 - PFLU_RS21670 0.45 +1.4 4,884,063 - PFLU_RS21670 0.45 +1.0 4,884,063 - PFLU_RS21670 0.45 +1.1 4,884,063 - PFLU_RS21670 0.45 +0.4 4,884,063 - PFLU_RS21670 0.45 -0.4 4,884,063 - PFLU_RS21670 0.45 +1.6 4,884,063 - PFLU_RS21670 0.45 +0.8 4,884,063 - PFLU_RS21670 0.45 +1.9 4,884,063 - PFLU_RS21670 0.45 +0.7 4,884,063 - PFLU_RS21670 0.45 +1.2 4,884,063 - PFLU_RS21670 0.45 +1.1 4,884,063 - PFLU_RS21670 0.45 +0.0 4,884,063 - PFLU_RS21670 0.45 +0.6
Or see this region's nucleotide sequence