Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20565 and PFLU_RS20570 are separated by 53 nucleotides PFLU_RS20570 and PFLU_RS20575 are separated by 146 nucleotides PFLU_RS20575 and PFLU_RS20580 are separated by 10 nucleotides
PFLU_RS20565: PFLU_RS20565 - 3-isopropylmalate dehydrogenase, at 4,631,941 to 4,633,023
_RS20565
PFLU_RS20570: PFLU_RS20570 - class I SAM-dependent methyltransferase, at 4,633,077 to 4,633,841
_RS20570
PFLU_RS20575: PFLU_RS20575 - 3-isopropylmalate dehydratase small subunit, at 4,633,988 to 4,634,632
_RS20575
PFLU_RS20580: PFLU_RS20580 - 3-isopropylmalate dehydratase large subunit, at 4,634,643 to 4,636,061
_RS20580
Position (kb) 4633
4634
4635 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4633.139 kb on - strand at 4633.141 kb on + strand at 4633.141 kb on + strand at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.234 kb on + strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.235 kb on - strand, within PFLU_RS20570 at 4633.259 kb on + strand, within PFLU_RS20570 at 4633.318 kb on + strand, within PFLU_RS20570 at 4633.318 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.366 kb on + strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.367 kb on - strand, within PFLU_RS20570 at 4633.551 kb on + strand, within PFLU_RS20570 at 4633.552 kb on - strand, within PFLU_RS20570 at 4633.552 kb on - strand, within PFLU_RS20570 at 4633.627 kb on + strand, within PFLU_RS20570 at 4633.627 kb on + strand, within PFLU_RS20570 at 4633.627 kb on + strand, within PFLU_RS20570 at 4633.627 kb on + strand, within PFLU_RS20570 at 4633.644 kb on - strand, within PFLU_RS20570 at 4633.658 kb on + strand, within PFLU_RS20570 at 4633.734 kb on + strand, within PFLU_RS20570 at 4633.735 kb on - strand, within PFLU_RS20570 at 4633.781 kb on - strand at 4633.872 kb on + strand at 4633.872 kb on + strand at 4633.873 kb on - strand at 4633.873 kb on - strand at 4633.873 kb on - strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.979 kb on + strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4633.980 kb on - strand at 4634.133 kb on + strand, within PFLU_RS20575 at 4634.133 kb on + strand, within PFLU_RS20575 at 4634.133 kb on + strand, within PFLU_RS20575 at 4634.133 kb on + strand, within PFLU_RS20575 at 4634.134 kb on - strand, within PFLU_RS20575 at 4634.134 kb on - strand, within PFLU_RS20575 at 4634.134 kb on - strand, within PFLU_RS20575 at 4634.299 kb on - strand, within PFLU_RS20575 at 4634.328 kb on + strand, within PFLU_RS20575 at 4634.329 kb on - strand, within PFLU_RS20575 at 4634.475 kb on + strand, within PFLU_RS20575 at 4634.620 kb on + strand at 4634.621 kb on - strand at 4634.621 kb on - strand at 4634.621 kb on - strand at 4634.621 kb on - strand at 4634.621 kb on - strand at 4634.637 kb on + strand at 4634.754 kb on - strand at 4634.754 kb on - strand at 4635.022 kb on - strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.073 kb on + strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.074 kb on - strand, within PFLU_RS20580 at 4635.322 kb on + strand, within PFLU_RS20580 at 4635.322 kb on + strand, within PFLU_RS20580 at 4635.322 kb on + strand, within PFLU_RS20580 at 4635.322 kb on + strand, within PFLU_RS20580 at 4635.323 kb on - strand, within PFLU_RS20580 at 4635.323 kb on - strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.551 kb on + strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580 at 4635.552 kb on - strand, within PFLU_RS20580
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,633,139 - +0.3 4,633,141 + +0.7 4,633,141 + -0.1 4,633,234 + PFLU_RS20570 0.21 -0.6 4,633,234 + PFLU_RS20570 0.21 +0.3 4,633,234 + PFLU_RS20570 0.21 +0.6 4,633,234 + PFLU_RS20570 0.21 +0.9 4,633,234 + PFLU_RS20570 0.21 +0.3 4,633,234 + PFLU_RS20570 0.21 -0.8 4,633,235 - PFLU_RS20570 0.21 -0.2 4,633,235 - PFLU_RS20570 0.21 +1.9 4,633,235 - PFLU_RS20570 0.21 +1.0 4,633,235 - PFLU_RS20570 0.21 -1.2 4,633,235 - PFLU_RS20570 0.21 +0.3 4,633,235 - PFLU_RS20570 0.21 -0.8 4,633,259 + PFLU_RS20570 0.24 +0.5 4,633,318 + PFLU_RS20570 0.32 -0.2 4,633,318 + PFLU_RS20570 0.32 -0.0 4,633,366 + PFLU_RS20570 0.38 -0.1 4,633,366 + PFLU_RS20570 0.38 -1.1 4,633,366 + PFLU_RS20570 0.38 -2.1 4,633,366 + PFLU_RS20570 0.38 +0.6 4,633,366 + PFLU_RS20570 0.38 -0.6 4,633,366 + PFLU_RS20570 0.38 -0.6 4,633,367 - PFLU_RS20570 0.38 +2.3 4,633,367 - PFLU_RS20570 0.38 +0.4 4,633,367 - PFLU_RS20570 0.38 +0.4 4,633,367 - PFLU_RS20570 0.38 -0.0 4,633,367 - PFLU_RS20570 0.38 +0.3 4,633,367 - PFLU_RS20570 0.38 -0.8 4,633,367 - PFLU_RS20570 0.38 -1.3 4,633,367 - PFLU_RS20570 0.38 +0.5 4,633,551 + PFLU_RS20570 0.62 -2.0 4,633,552 - PFLU_RS20570 0.62 +0.5 4,633,552 - PFLU_RS20570 0.62 +0.3 4,633,627 + PFLU_RS20570 0.72 +0.6 4,633,627 + PFLU_RS20570 0.72 +0.8 4,633,627 + PFLU_RS20570 0.72 -0.9 4,633,627 + PFLU_RS20570 0.72 -0.3 4,633,644 - PFLU_RS20570 0.74 +0.7 4,633,658 + PFLU_RS20570 0.76 -0.3 4,633,734 + PFLU_RS20570 0.86 +0.8 4,633,735 - PFLU_RS20570 0.86 +0.3 4,633,781 - +0.2 4,633,872 + +0.1 4,633,872 + -0.2 4,633,873 - +0.3 4,633,873 - +0.4 4,633,873 - +0.1 4,633,979 + +0.7 4,633,979 + -0.1 4,633,979 + -0.2 4,633,979 + +0.2 4,633,979 + -0.0 4,633,979 + -0.4 4,633,979 + +1.8 4,633,979 + +0.8 4,633,980 - +0.1 4,633,980 - -0.6 4,633,980 - +1.5 4,633,980 - +0.3 4,633,980 - +0.6 4,633,980 - -0.4 4,633,980 - +0.6 4,633,980 - +0.2 4,633,980 - +1.1 4,634,133 + PFLU_RS20575 0.22 -1.6 4,634,133 + PFLU_RS20575 0.22 -2.9 4,634,133 + PFLU_RS20575 0.22 -4.2 4,634,133 + PFLU_RS20575 0.22 -3.9 4,634,134 - PFLU_RS20575 0.23 -2.3 4,634,134 - PFLU_RS20575 0.23 -3.4 4,634,134 - PFLU_RS20575 0.23 -3.4 4,634,299 - PFLU_RS20575 0.48 -3.2 4,634,328 + PFLU_RS20575 0.53 -2.1 4,634,329 - PFLU_RS20575 0.53 -2.0 4,634,475 + PFLU_RS20575 0.76 -3.8 4,634,620 + -3.0 4,634,621 - -0.6 4,634,621 - +0.3 4,634,621 - -4.2 4,634,621 - -2.9 4,634,621 - -4.1 4,634,637 + -2.5 4,634,754 - -3.7 4,634,754 - -4.1 4,635,022 - PFLU_RS20580 0.27 -3.7 4,635,073 + PFLU_RS20580 0.30 -2.4 4,635,073 + PFLU_RS20580 0.30 -3.4 4,635,073 + PFLU_RS20580 0.30 -3.2 4,635,073 + PFLU_RS20580 0.30 -2.7 4,635,073 + PFLU_RS20580 0.30 -2.4 4,635,073 + PFLU_RS20580 0.30 -1.6 4,635,073 + PFLU_RS20580 0.30 -3.8 4,635,073 + PFLU_RS20580 0.30 -2.4 4,635,073 + PFLU_RS20580 0.30 -2.4 4,635,073 + PFLU_RS20580 0.30 -3.9 4,635,073 + PFLU_RS20580 0.30 -1.3 4,635,073 + PFLU_RS20580 0.30 -4.6 4,635,073 + PFLU_RS20580 0.30 -3.5 4,635,074 - PFLU_RS20580 0.30 -3.3 4,635,074 - PFLU_RS20580 0.30 -3.3 4,635,074 - PFLU_RS20580 0.30 -3.3 4,635,074 - PFLU_RS20580 0.30 -1.4 4,635,074 - PFLU_RS20580 0.30 -3.0 4,635,074 - PFLU_RS20580 0.30 -3.6 4,635,074 - PFLU_RS20580 0.30 -2.8 4,635,322 + PFLU_RS20580 0.48 -3.2 4,635,322 + PFLU_RS20580 0.48 -3.4 4,635,322 + PFLU_RS20580 0.48 -2.9 4,635,322 + PFLU_RS20580 0.48 -3.9 4,635,323 - PFLU_RS20580 0.48 -3.2 4,635,323 - PFLU_RS20580 0.48 -3.5 4,635,551 + PFLU_RS20580 0.64 -4.0 4,635,551 + PFLU_RS20580 0.64 -1.9 4,635,551 + PFLU_RS20580 0.64 -0.7 4,635,551 + PFLU_RS20580 0.64 -4.2 4,635,551 + PFLU_RS20580 0.64 -3.4 4,635,551 + PFLU_RS20580 0.64 -2.7 4,635,551 + PFLU_RS20580 0.64 -2.7 4,635,551 + PFLU_RS20580 0.64 -1.8 4,635,551 + PFLU_RS20580 0.64 -2.6 4,635,551 + PFLU_RS20580 0.64 -3.0 4,635,551 + PFLU_RS20580 0.64 -2.8 4,635,551 + PFLU_RS20580 0.64 -3.6 4,635,552 - PFLU_RS20580 0.64 -3.1 4,635,552 - PFLU_RS20580 0.64 -2.5 4,635,552 - PFLU_RS20580 0.64 -3.2 4,635,552 - PFLU_RS20580 0.64 -2.5 4,635,552 - PFLU_RS20580 0.64 -2.7 4,635,552 - PFLU_RS20580 0.64 -4.0 4,635,552 - PFLU_RS20580 0.64 -3.1 4,635,552 - PFLU_RS20580 0.64 -2.3 4,635,552 - PFLU_RS20580 0.64 -2.8 4,635,552 - PFLU_RS20580 0.64 -3.0 4,635,552 - PFLU_RS20580 0.64 -3.2
Or see this region's nucleotide sequence