Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08155

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08150 and PFLU_RS08155 are separated by 12 nucleotidesPFLU_RS08155 and PFLU_RS30510 are separated by 5 nucleotides PFLU_RS08150: PFLU_RS08150 - capsular polysaccharide biosynthesis protein CapF, at 1,820,398 to 1,821,525 _RS08150 PFLU_RS08155: PFLU_RS08155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,821,538 to 1,822,668 _RS08155 PFLU_RS30510: PFLU_RS30510 - glycosyltransferase family 4 protein, at 1,822,674 to 1,823,891 _RS30510 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1821.618 kb on + strandat 1821.706 kb on - strand, within PFLU_RS08155at 1821.770 kb on + strand, within PFLU_RS08155at 1821.828 kb on + strand, within PFLU_RS08155at 1821.834 kb on + strand, within PFLU_RS08155at 1821.835 kb on - strand, within PFLU_RS08155at 1821.840 kb on + strand, within PFLU_RS08155at 1821.840 kb on + strand, within PFLU_RS08155at 1821.841 kb on - strand, within PFLU_RS08155at 1821.841 kb on - strand, within PFLU_RS08155at 1821.979 kb on - strand, within PFLU_RS08155at 1822.002 kb on - strand, within PFLU_RS08155at 1822.050 kb on + strand, within PFLU_RS08155at 1822.051 kb on - strand, within PFLU_RS08155at 1822.124 kb on + strand, within PFLU_RS08155at 1822.339 kb on + strand, within PFLU_RS08155at 1822.340 kb on - strand, within PFLU_RS08155at 1822.341 kb on + strand, within PFLU_RS08155at 1822.344 kb on + strand, within PFLU_RS08155at 1822.344 kb on + strand, within PFLU_RS08155at 1822.373 kb on + strand, within PFLU_RS08155at 1822.386 kb on + strand, within PFLU_RS08155at 1822.479 kb on + strand, within PFLU_RS08155at 1822.520 kb on + strand, within PFLU_RS08155at 1822.585 kb on - strandat 1822.624 kb on - strandat 1822.877 kb on + strand, within PFLU_RS30510at 1822.888 kb on + strand, within PFLU_RS30510at 1822.904 kb on + strand, within PFLU_RS30510at 1822.993 kb on + strand, within PFLU_RS30510at 1822.995 kb on + strand, within PFLU_RS30510at 1822.996 kb on - strand, within PFLU_RS30510at 1823.084 kb on + strand, within PFLU_RS30510at 1823.085 kb on - strand, within PFLU_RS30510at 1823.168 kb on - strand, within PFLU_RS30510at 1823.170 kb on - strand, within PFLU_RS30510at 1823.264 kb on + strand, within PFLU_RS30510at 1823.303 kb on + strand, within PFLU_RS30510at 1823.303 kb on + strand, within PFLU_RS30510at 1823.333 kb on + strand, within PFLU_RS30510at 1823.380 kb on + strand, within PFLU_RS30510at 1823.635 kb on - strand, within PFLU_RS30510at 1823.636 kb on + strand, within PFLU_RS30510at 1823.636 kb on + strand, within PFLU_RS30510at 1823.636 kb on + strand, within PFLU_RS30510

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,821,618 + -3.1
1,821,706 - PFLU_RS08155 0.15 -1.9
1,821,770 + PFLU_RS08155 0.21 -3.0
1,821,828 + PFLU_RS08155 0.26 -1.6
1,821,834 + PFLU_RS08155 0.26 -2.4
1,821,835 - PFLU_RS08155 0.26 -1.5
1,821,840 + PFLU_RS08155 0.27 -1.6
1,821,840 + PFLU_RS08155 0.27 -2.3
1,821,841 - PFLU_RS08155 0.27 -3.1
1,821,841 - PFLU_RS08155 0.27 -0.1
1,821,979 - PFLU_RS08155 0.39 -2.7
1,822,002 - PFLU_RS08155 0.41 -1.2
1,822,050 + PFLU_RS08155 0.45 -1.9
1,822,051 - PFLU_RS08155 0.45 -1.0
1,822,124 + PFLU_RS08155 0.52 -1.7
1,822,339 + PFLU_RS08155 0.71 -2.7
1,822,340 - PFLU_RS08155 0.71 -2.6
1,822,341 + PFLU_RS08155 0.71 -0.6
1,822,344 + PFLU_RS08155 0.71 -3.0
1,822,344 + PFLU_RS08155 0.71 -2.3
1,822,373 + PFLU_RS08155 0.74 -2.0
1,822,386 + PFLU_RS08155 0.75 -4.3
1,822,479 + PFLU_RS08155 0.83 -3.5
1,822,520 + PFLU_RS08155 0.87 -1.8
1,822,585 - -1.5
1,822,624 - -2.1
1,822,877 + PFLU_RS30510 0.17 +0.3
1,822,888 + PFLU_RS30510 0.18 -0.1
1,822,904 + PFLU_RS30510 0.19 -0.3
1,822,993 + PFLU_RS30510 0.26 +1.1
1,822,995 + PFLU_RS30510 0.26 +0.7
1,822,996 - PFLU_RS30510 0.26 +0.6
1,823,084 + PFLU_RS30510 0.34 -0.9
1,823,085 - PFLU_RS30510 0.34 +0.2
1,823,168 - PFLU_RS30510 0.41 +1.0
1,823,170 - PFLU_RS30510 0.41 -2.2
1,823,264 + PFLU_RS30510 0.48 -0.4
1,823,303 + PFLU_RS30510 0.52 +0.7
1,823,303 + PFLU_RS30510 0.52 +1.1
1,823,333 + PFLU_RS30510 0.54 +0.6
1,823,380 + PFLU_RS30510 0.58 +1.7
1,823,635 - PFLU_RS30510 0.79 +0.4
1,823,636 + PFLU_RS30510 0.79 +0.3
1,823,636 + PFLU_RS30510 0.79 +0.7
1,823,636 + PFLU_RS30510 0.79 +1.2

Or see this region's nucleotide sequence