Strain Fitness in Pseudomonas fluorescens SBW25

Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05700

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NAG (C)
				remove
1,285,403	-	PFLU_RS05690	0.42	-1.4
1,285,403	-	PFLU_RS05690	0.42	-1.4
1,285,403	-	PFLU_RS05690	0.42	-1.1
1,285,403	-	PFLU_RS05690	0.42	-0.4
1,285,450	+	PFLU_RS05690	0.56	+0.1
1,285,450	+	PFLU_RS05690	0.56	+0.2
1,285,464	+	PFLU_RS05690	0.60	+0.1
1,285,609	-			+0.7
1,285,623	+			+0.8
1,285,623	+			+0.1
1,285,624	-			+0.3
1,285,624	-			-0.9
1,285,641	+			+0.9
1,285,642	-			+1.8
1,285,681	-			+1.5
1,285,704	+			+0.0
1,285,704	+			+1.3
1,285,704	+			+0.5
1,285,704	+			-0.2
1,285,705	-			+0.4
1,286,016	+	PFLU_RS05695	0.72	+0.2
1,286,016	+	PFLU_RS05695	0.72	+0.5
1,286,016	+	PFLU_RS05695	0.72	-0.2
1,286,016	+	PFLU_RS05695	0.72	+0.1
1,286,017	-	PFLU_RS05695	0.72	+0.9
1,286,055	+	PFLU_RS05695	0.80	-1.1
1,286,055	+	PFLU_RS05695	0.80	+0.6
1,286,055	+	PFLU_RS05695	0.80	+0.6
1,286,055	+	PFLU_RS05695	0.80	-0.2
1,286,055	+	PFLU_RS05695	0.80	-0.2
1,286,056	-	PFLU_RS05695	0.80	-0.3
1,286,056	-	PFLU_RS05695	0.80	+0.4
1,286,056	-	PFLU_RS05695	0.80	-0.4
1,286,056	-	PFLU_RS05695	0.80	+0.2
1,286,056	-	PFLU_RS05695	0.80	+0.1
1,286,056	-	PFLU_RS05695	0.80	-0.5
1,286,056	-	PFLU_RS05695	0.80	+0.5
1,286,056	-	PFLU_RS05695	0.80	+0.6
1,286,056	-	PFLU_RS05695	0.80	-0.4
1,286,056	-	PFLU_RS05695	0.80	+0.5
1,286,076	+	PFLU_RS05695	0.84	+0.5
1,286,076	+	PFLU_RS05695	0.84	+0.0
1,286,076	+	PFLU_RS05695	0.84	+0.7
1,286,179	+			+0.7
1,286,179	+			-0.5
1,286,179	+			+1.2
1,286,179	+			+0.6
1,286,179	+			+0.1
1,286,179	+			+0.3
1,286,179	+			+0.2
1,286,179	+			+0.9
1,286,180	-			+1.3
1,286,180	-			+0.1
1,286,180	-			+0.1
1,286,180	-			+0.1
1,286,180	-			+0.3
1,286,180	-			-0.7
1,286,180	-			-1.0
1,286,180	-			-0.0
1,286,180	-			-1.0
1,286,180	-			-1.9
1,286,180	-			-0.2
1,286,180	-			-0.1
1,286,181	+			+2.2
1,286,181	+			+0.7
1,286,181	+			+0.9
1,286,182	-			-0.8
1,286,209	+			+1.1
1,286,221	+			-0.1
1,286,221	+			+0.8
1,286,236	+			+0.3
1,286,291	-			+0.3
1,286,291	-			-0.4
1,286,362	+			-0.1
1,286,377	-	PFLU_RS05700	0.12	-0.7
1,286,496	+	PFLU_RS05700	0.66	+0.1
1,286,497	-	PFLU_RS05700	0.67	+1.2
1,286,497	-	PFLU_RS05700	0.67	-0.0
1,286,497	-	PFLU_RS05700	0.67	+1.1
1,286,497	-	PFLU_RS05700	0.67	+1.0
1,286,497	-	PFLU_RS05700	0.67	-0.8
1,286,514	+	PFLU_RS05700	0.74	+0.3
1,286,514	+	PFLU_RS05700	0.74	+1.0
1,286,514	+	PFLU_RS05700	0.74	+0.1
1,286,514	+	PFLU_RS05700	0.74	+0.6
1,286,514	+	PFLU_RS05700	0.74	+0.7
1,286,514	+	PFLU_RS05700	0.74	+1.1
1,286,514	+	PFLU_RS05700	0.74	+0.4
1,286,514	+	PFLU_RS05700	0.74	-1.7
1,286,515	-	PFLU_RS05700	0.75	-1.2
1,286,515	-	PFLU_RS05700	0.75	-0.0
1,286,515	-	PFLU_RS05700	0.75	+0.7
1,286,515	-	PFLU_RS05700	0.75	-0.9
1,286,515	-	PFLU_RS05700	0.75	+0.5
1,286,515	-	PFLU_RS05700	0.75	-1.2
1,286,515	-	PFLU_RS05700	0.75	+0.0
1,286,515	-	PFLU_RS05700	0.75	+1.1
1,286,551	+			-0.1
1,286,565	+			-0.2
1,286,565	+			-1.4
1,286,565	+			+1.4
1,286,565	+			+0.2
1,286,565	+			+0.5
1,286,565	+			+0.9
1,286,565	+			+0.4
1,286,565	+			+1.2
1,286,565	+			-0.9
1,286,565	+			-0.6
1,286,565	+			+0.5
1,286,565	+			+0.1
1,286,565	+			+0.3
1,286,565	+			-0.8
1,286,565	+			+0.1
1,286,565	+			-1.5
1,286,565	+			+0.3
1,286,565	+			-0.2
1,286,565	+			+0.3
1,286,565	+			+0.1
1,286,565	+			+0.5
1,286,565	+			+1.0
1,286,565	+			-0.5
1,286,565	+			-0.5
1,286,565	+			-0.6
1,286,565	+			+0.1
1,286,565	+			+1.2
1,286,565	+			+0.2
1,286,565	+			+0.4
1,286,565	+			-0.6
1,286,565	+			-0.2
1,286,565	+			-0.2
1,286,565	+			-0.1
1,286,565	+			+0.5
1,286,565	+			+0.7
1,286,565	+			-0.1
1,286,565	+			+1.2
1,286,565	+			-0.5
1,286,565	+			-0.9
1,286,565	+			+0.3
1,286,565	+			+0.4
1,286,565	+			+0.8
1,286,565	+			+0.2
1,286,565	+			-0.3
1,286,565	+			+0.9
1,286,565	+			-0.9
1,286,565	+			-1.0
1,286,565	+			+0.1
1,286,565	+			+0.2
1,286,565	+			-0.1
1,286,565	+			+0.2
1,286,565	+			+0.2
1,286,565	+			+0.4
1,286,566	-			-0.5
1,286,566	-			-0.6
1,286,566	-			+0.4
1,286,566	-			-0.8
1,286,566	-			+0.6
1,286,566	-			+0.3
1,286,566	-			+0.5
1,286,566	-			+0.1
1,286,566	-			-0.0
1,286,566	-			+0.6
1,286,566	-			+0.6
1,286,566	-			+0.1
1,286,566	-			-0.4
1,286,566	-			+0.1
1,286,566	-			-0.0
1,286,566	-			+0.9
1,286,566	-			+0.4
1,286,566	-			+0.8
1,286,566	-			+0.6
1,286,566	-			-0.0
1,286,566	-			+0.1
1,286,566	-			+0.3
1,286,566	-			-0.2
1,286,566	-			+0.5
1,286,566	-			+0.4
1,286,566	-			+0.1
1,286,566	-			+0.5
1,286,566	-			+0.2
1,286,566	-			+0.6
1,286,566	-			+0.2
1,286,566	-			-0.2
1,286,566	-			+0.2
1,286,566	-			-0.5
1,286,566	-			-0.1
1,286,566	-			-0.0
1,286,566	-			+0.6
1,286,566	-			-0.9
1,286,566	-			+0.9
1,286,566	-			-0.4
1,286,566	-			-0.5
1,286,566	-			-1.0
1,286,566	-			-0.2
1,286,569	+			-0.3
1,286,569	+			-0.4
1,286,569	+			-0.1
1,286,569	+			-0.3
1,286,569	+			-0.1
1,286,569	+			+0.4
1,286,569	+			+0.5
1,286,569	+			-0.4
1,286,569	+			+0.2
1,286,569	+			+1.1
1,286,569	+			+0.3
1,286,569	+			-0.3
1,286,569	+			+0.8
1,286,570	-			-0.9
1,286,570	-			-0.3
1,286,570	-			-1.4
1,286,570	-			-0.4
1,286,570	-			+2.0
1,286,570	-			-1.8
1,286,570	-			-0.6
1,286,570	-			+0.3
1,286,570	-			+0.1
1,286,570	-			+0.5
1,286,570	-			+0.0
1,286,570	-			-0.0
1,286,570	-			-1.0
1,286,570	-			+0.6
1,286,570	-			-0.2
1,286,570	-			-0.1
1,286,570	-			+0.7
1,286,570	-			-0.3
1,286,592	-			-1.2
1,286,598	+			+0.6
1,286,598	+			+0.6
1,286,598	+			+0.8
1,286,598	+			+0.8
1,286,598	+			-0.7
1,286,599	-			-0.5
1,286,599	-			+0.6
1,286,599	-			+1.0
1,286,599	-			-0.0
1,286,615	-			+0.2
1,286,615	-			+1.1
1,286,615	-			+0.5
1,286,649	+			+0.7
1,286,650	-			-1.0
1,286,699	+			+0.6
1,286,699	+			-0.5
1,286,699	+			-0.3
1,286,699	+			+0.1
1,286,699	+			-0.7
1,286,699	+			+0.5
1,286,699	+			-0.3
1,286,699	+			-0.8
1,286,699	+			-1.7
1,286,699	+			+0.4
1,286,699	+			-0.2
1,286,699	+			+1.3
1,286,699	+			-0.6
1,286,699	+			-0.1
1,286,699	+			-0.5
1,286,699	+			-0.1
1,286,699	+			-1.7
1,286,699	+			+1.4
1,286,699	+			-0.4
1,286,699	+			+0.7
1,286,700	-			+0.2
1,286,700	-			-0.4
1,286,700	-			-0.2
1,286,700	-			-1.0
1,286,700	-			-0.1
1,286,700	-			+0.4
1,286,700	-			+0.4
1,286,700	-			+1.0
1,286,700	-			-1.6
1,286,700	-			+0.9
1,286,700	-			-1.5
1,286,700	-			+0.3
1,286,700	-			+0.2
1,286,700	-			+0.3
1,286,700	-			-0.8
1,286,777	+			+0.1
1,286,777	+			-0.4
1,286,777	+			-0.4
1,286,821	-			+0.3
1,286,821	-			+0.5
1,286,821	-			-0.2
1,286,853	+			-0.8
1,286,854	-			-0.6
1,286,921	+	PFLU_RS05705	0.18	-0.5
1,286,921	+	PFLU_RS05705	0.18	+0.1
1,286,922	-	PFLU_RS05705	0.18	-0.9
1,286,939	+	PFLU_RS05705	0.21	+0.9
1,287,113	+	PFLU_RS05705	0.50	-0.2
1,287,113	+	PFLU_RS05705	0.50	-1.9
1,287,113	+	PFLU_RS05705	0.50	-0.2
1,287,113	+	PFLU_RS05705	0.50	-0.5
1,287,113	+	PFLU_RS05705	0.50	+0.2
1,287,114	-	PFLU_RS05705	0.50	+0.0
1,287,114	-	PFLU_RS05705	0.50	-0.8
1,287,114	-	PFLU_RS05705	0.50	-0.4
1,287,114	-	PFLU_RS05705	0.50	-0.7
1,287,114	-	PFLU_RS05705	0.50	-1.8
1,287,114	-	PFLU_RS05705	0.50	-0.2
1,287,155	+	PFLU_RS05705	0.57	+0.5
1,287,155	+	PFLU_RS05705	0.57	-2.6
1,287,155	+	PFLU_RS05705	0.57	+0.8
1,287,156	-	PFLU_RS05705	0.57	-0.2
1,287,156	-	PFLU_RS05705	0.57	-2.1
1,287,156	-	PFLU_RS05705	0.57	+1.6
1,287,156	-	PFLU_RS05705	0.57	+0.4
1,287,259	+	PFLU_RS05705	0.74	-0.3
1,287,260	-	PFLU_RS05705	0.74	-0.6
1,287,260	-	PFLU_RS05705	0.74	+1.6
1,287,386	+			+0.5
1,287,386	+			+0.6
1,287,386	+			-1.5
1,287,387	-			+0.0
1,287,413	+			-0.6
1,287,413	+			+1.6
1,287,414	-			+0.1
1,287,429	+			+1.3
1,287,429	+			-0.6
1,287,466	-			-0.5
1,287,563	+			-0.1
1,287,563	+			+0.3
1,287,563	+			+1.2

Or see this region's nucleotide sequence