Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03030

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03025 and PFLU_RS03030 are separated by 185 nucleotidesPFLU_RS03030 and PFLU_RS03035 are separated by 30 nucleotides PFLU_RS03025: PFLU_RS03025 - tRNA dihydrouridine synthase DusB, at 697,164 to 698,177 _RS03025 PFLU_RS03030: PFLU_RS03030 - DUF3426 domain-containing protein, at 698,363 to 699,595 _RS03030 PFLU_RS03035: PFLU_RS03035 - 50S ribosomal protein L11 methyltransferase, at 699,626 to 700,504 _RS03035 Position (kb) 698 699 700Strain fitness (log2 ratio) -1 0 1 2 3at 697.389 kb on + strand, within PFLU_RS03025at 697.390 kb on - strand, within PFLU_RS03025at 697.398 kb on - strand, within PFLU_RS03025at 697.432 kb on - strand, within PFLU_RS03025at 697.432 kb on - strand, within PFLU_RS03025at 697.622 kb on - strand, within PFLU_RS03025at 697.639 kb on + strand, within PFLU_RS03025at 697.680 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.062 kb on - strand, within PFLU_RS03025at 698.153 kb on - strandat 698.153 kb on - strandat 698.153 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.178 kb on - strandat 698.208 kb on - strandat 698.286 kb on - strandat 698.322 kb on + strandat 698.322 kb on + strandat 698.323 kb on - strandat 698.329 kb on + strandat 698.330 kb on - strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.391 kb on + strandat 698.392 kb on - strandat 698.404 kb on + strandat 698.405 kb on - strandat 698.434 kb on + strandat 698.435 kb on - strandat 698.435 kb on - strandat 698.490 kb on + strand, within PFLU_RS03030at 698.491 kb on - strand, within PFLU_RS03030at 698.491 kb on - strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.592 kb on + strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.593 kb on - strand, within PFLU_RS03030at 698.642 kb on + strand, within PFLU_RS03030at 698.642 kb on + strand, within PFLU_RS03030at 698.643 kb on - strand, within PFLU_RS03030at 698.643 kb on - strand, within PFLU_RS03030at 698.643 kb on - strand, within PFLU_RS03030at 698.653 kb on + strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.695 kb on + strand, within PFLU_RS03030at 698.696 kb on - strand, within PFLU_RS03030at 698.696 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.779 kb on - strand, within PFLU_RS03030at 698.865 kb on + strand, within PFLU_RS03030at 699.388 kb on + strand, within PFLU_RS03030at 699.627 kb on + strandat 699.867 kb on + strand, within PFLU_RS03035at 699.867 kb on + strand, within PFLU_RS03035at 699.868 kb on - strand, within PFLU_RS03035at 699.868 kb on - strand, within PFLU_RS03035at 699.868 kb on - strand, within PFLU_RS03035at 700.452 kb on + strandat 700.453 kb on - strandat 700.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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697,389 + PFLU_RS03025 0.22 +0.7
697,390 - PFLU_RS03025 0.22 +0.9
697,398 - PFLU_RS03025 0.23 -0.4
697,432 - PFLU_RS03025 0.26 +0.1
697,432 - PFLU_RS03025 0.26 +0.8
697,622 - PFLU_RS03025 0.45 +0.9
697,639 + PFLU_RS03025 0.47 -0.5
697,680 - PFLU_RS03025 0.51 +0.6
698,062 - PFLU_RS03025 0.89 +1.1
698,062 - PFLU_RS03025 0.89 +0.1
698,062 - PFLU_RS03025 0.89 -0.8
698,062 - PFLU_RS03025 0.89 -0.8
698,153 - +0.0
698,153 - +1.4
698,153 - -0.1
698,178 - -0.3
698,178 - +1.7
698,178 - -0.2
698,208 - +1.0
698,286 - -0.4
698,322 + +0.2
698,322 + -0.1
698,323 - +0.2
698,329 + +0.1
698,330 - +2.8
698,391 + -0.0
698,391 + +1.4
698,391 + -0.1
698,391 + +0.4
698,392 - +0.7
698,404 + +0.5
698,405 - -0.2
698,434 + +0.2
698,435 - +0.2
698,435 - +0.2
698,490 + PFLU_RS03030 0.10 -0.6
698,491 - PFLU_RS03030 0.10 +1.2
698,491 - PFLU_RS03030 0.10 +0.7
698,592 + PFLU_RS03030 0.19 +1.2
698,592 + PFLU_RS03030 0.19 +0.5
698,592 + PFLU_RS03030 0.19 +0.9
698,592 + PFLU_RS03030 0.19 +0.0
698,592 + PFLU_RS03030 0.19 -0.2
698,592 + PFLU_RS03030 0.19 -0.3
698,592 + PFLU_RS03030 0.19 -0.4
698,592 + PFLU_RS03030 0.19 +0.6
698,592 + PFLU_RS03030 0.19 +1.5
698,592 + PFLU_RS03030 0.19 +1.8
698,592 + PFLU_RS03030 0.19 +0.8
698,592 + PFLU_RS03030 0.19 +0.2
698,592 + PFLU_RS03030 0.19 -0.2
698,592 + PFLU_RS03030 0.19 +0.7
698,593 - PFLU_RS03030 0.19 -0.1
698,593 - PFLU_RS03030 0.19 +0.1
698,593 - PFLU_RS03030 0.19 +0.9
698,593 - PFLU_RS03030 0.19 +1.0
698,593 - PFLU_RS03030 0.19 +1.3
698,593 - PFLU_RS03030 0.19 +0.4
698,593 - PFLU_RS03030 0.19 +0.2
698,593 - PFLU_RS03030 0.19 +1.9
698,593 - PFLU_RS03030 0.19 +0.2
698,593 - PFLU_RS03030 0.19 +0.8
698,593 - PFLU_RS03030 0.19 -0.4
698,593 - PFLU_RS03030 0.19 +0.3
698,593 - PFLU_RS03030 0.19 -0.5
698,593 - PFLU_RS03030 0.19 -0.0
698,593 - PFLU_RS03030 0.19 -0.3
698,593 - PFLU_RS03030 0.19 +0.1
698,593 - PFLU_RS03030 0.19 +0.8
698,642 + PFLU_RS03030 0.23 -0.1
698,642 + PFLU_RS03030 0.23 +0.6
698,643 - PFLU_RS03030 0.23 +1.1
698,643 - PFLU_RS03030 0.23 +0.8
698,643 - PFLU_RS03030 0.23 +0.5
698,653 + PFLU_RS03030 0.24 +1.1
698,695 + PFLU_RS03030 0.27 +0.4
698,695 + PFLU_RS03030 0.27 +0.7
698,696 - PFLU_RS03030 0.27 +0.8
698,696 - PFLU_RS03030 0.27 -0.9
698,779 - PFLU_RS03030 0.34 +0.2
698,779 - PFLU_RS03030 0.34 -0.1
698,779 - PFLU_RS03030 0.34 +1.4
698,779 - PFLU_RS03030 0.34 +0.0
698,865 + PFLU_RS03030 0.41 +0.1
699,388 + PFLU_RS03030 0.83 +0.5
699,627 + +0.9
699,867 + PFLU_RS03035 0.27 -1.4
699,867 + PFLU_RS03035 0.27 +0.2
699,868 - PFLU_RS03035 0.28 -0.1
699,868 - PFLU_RS03035 0.28 +0.3
699,868 - PFLU_RS03035 0.28 +0.6
700,452 + +0.3
700,453 - -0.2
700,453 - +0.4

Or see this region's nucleotide sequence