Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00085 and PFLU_RS00090 are separated by 69 nucleotides PFLU_RS00090 and PFLU_RS00095 are separated by 135 nucleotides PFLU_RS00095 and PFLU_RS00100 are separated by 63 nucleotides
PFLU_RS00085: PFLU_RS00085 - methionyl-tRNA formyltransferase, at 19,961 to 20,914
_RS00085
PFLU_RS00090: PFLU_RS00090 - peptide deformylase, at 20,984 to 21,490
_RS00090
PFLU_RS00095: PFLU_RS00095 - hypothetical protein, at 21,626 to 22,417
_RS00095
PFLU_RS00100: PFLU_RS00100 - DNA-protecting protein DprA, at 22,481 to 23,575
_RS00100
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 21.373 kb on - strand, within PFLU_RS00090 at 21.491 kb on - strand at 21.491 kb on - strand at 21.491 kb on - strand at 21.497 kb on - strand at 21.497 kb on - strand at 21.517 kb on - strand at 21.606 kb on + strand at 21.606 kb on + strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.607 kb on - strand at 21.609 kb on + strand at 21.609 kb on + strand at 21.610 kb on - strand at 21.610 kb on - strand at 21.610 kb on - strand at 21.610 kb on - strand at 21.639 kb on + strand at 21.671 kb on - strand at 21.671 kb on - strand at 21.754 kb on - strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.803 kb on + strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.804 kb on - strand, within PFLU_RS00095 at 21.857 kb on + strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.858 kb on - strand, within PFLU_RS00095 at 21.900 kb on + strand, within PFLU_RS00095 at 21.920 kb on + strand, within PFLU_RS00095 at 21.920 kb on + strand, within PFLU_RS00095 at 21.920 kb on + strand, within PFLU_RS00095 at 21.920 kb on + strand, within PFLU_RS00095 at 21.920 kb on + strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 21.921 kb on - strand, within PFLU_RS00095 at 22.105 kb on + strand, within PFLU_RS00095 at 22.105 kb on + strand, within PFLU_RS00095 at 22.167 kb on + strand, within PFLU_RS00095 at 22.167 kb on + strand, within PFLU_RS00095 at 22.168 kb on - strand, within PFLU_RS00095 at 22.168 kb on - strand, within PFLU_RS00095 at 22.189 kb on + strand, within PFLU_RS00095 at 22.190 kb on - strand, within PFLU_RS00095 at 22.254 kb on + strand, within PFLU_RS00095 at 22.255 kb on - strand, within PFLU_RS00095 at 22.328 kb on + strand, within PFLU_RS00095 at 22.343 kb on + strand at 22.344 kb on - strand at 22.344 kb on - strand at 22.344 kb on - strand at 22.344 kb on - strand at 22.415 kb on + strand at 22.415 kb on + strand at 22.415 kb on + strand at 22.415 kb on + strand at 22.415 kb on + strand at 22.415 kb on + strand at 22.416 kb on - strand at 22.416 kb on - strand at 22.416 kb on - strand at 22.416 kb on - strand at 22.416 kb on - strand at 22.416 kb on - strand at 22.419 kb on + strand at 22.419 kb on + strand at 22.419 kb on + strand at 22.427 kb on + strand at 22.427 kb on + strand at 22.427 kb on + strand at 22.427 kb on + strand at 22.428 kb on - strand at 22.431 kb on + strand at 22.431 kb on + strand at 22.436 kb on + strand at 22.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 21,373 - PFLU_RS00090 0.77 -1.5 21,491 - -1.2 21,491 - -1.6 21,491 - +0.7 21,497 - -0.7 21,497 - -0.1 21,517 - +1.0 21,606 + +0.5 21,606 + -1.6 21,607 - -0.7 21,607 - -0.3 21,607 - +0.3 21,607 - -0.5 21,607 - +0.1 21,607 - +0.2 21,607 - +0.0 21,607 - -0.9 21,609 + -1.3 21,609 + -1.1 21,610 - -0.3 21,610 - +0.5 21,610 - +0.5 21,610 - -0.2 21,639 + -0.1 21,671 - +0.3 21,671 - +1.2 21,754 - PFLU_RS00095 0.16 -0.2 21,803 + PFLU_RS00095 0.22 +0.2 21,803 + PFLU_RS00095 0.22 +0.1 21,803 + PFLU_RS00095 0.22 +0.3 21,803 + PFLU_RS00095 0.22 -3.4 21,803 + PFLU_RS00095 0.22 -0.0 21,803 + PFLU_RS00095 0.22 +1.0 21,803 + PFLU_RS00095 0.22 -0.3 21,803 + PFLU_RS00095 0.22 +0.4 21,803 + PFLU_RS00095 0.22 -0.8 21,803 + PFLU_RS00095 0.22 +0.1 21,803 + PFLU_RS00095 0.22 -0.7 21,803 + PFLU_RS00095 0.22 -0.8 21,804 - PFLU_RS00095 0.22 -1.2 21,804 - PFLU_RS00095 0.22 -0.2 21,804 - PFLU_RS00095 0.22 -0.2 21,804 - PFLU_RS00095 0.22 -0.2 21,804 - PFLU_RS00095 0.22 +0.1 21,804 - PFLU_RS00095 0.22 -0.0 21,804 - PFLU_RS00095 0.22 +1.1 21,804 - PFLU_RS00095 0.22 +0.1 21,804 - PFLU_RS00095 0.22 -0.3 21,804 - PFLU_RS00095 0.22 -0.4 21,804 - PFLU_RS00095 0.22 +0.3 21,804 - PFLU_RS00095 0.22 -1.2 21,857 + PFLU_RS00095 0.29 -0.2 21,858 - PFLU_RS00095 0.29 -1.0 21,858 - PFLU_RS00095 0.29 +0.6 21,858 - PFLU_RS00095 0.29 +1.2 21,858 - PFLU_RS00095 0.29 -1.0 21,858 - PFLU_RS00095 0.29 +0.1 21,858 - PFLU_RS00095 0.29 +0.3 21,858 - PFLU_RS00095 0.29 -0.6 21,858 - PFLU_RS00095 0.29 -0.2 21,900 + PFLU_RS00095 0.35 +0.3 21,920 + PFLU_RS00095 0.37 +0.5 21,920 + PFLU_RS00095 0.37 +0.3 21,920 + PFLU_RS00095 0.37 +0.5 21,920 + PFLU_RS00095 0.37 -2.5 21,920 + PFLU_RS00095 0.37 -0.4 21,921 - PFLU_RS00095 0.37 +0.4 21,921 - PFLU_RS00095 0.37 -0.2 21,921 - PFLU_RS00095 0.37 +0.9 21,921 - PFLU_RS00095 0.37 -0.0 21,921 - PFLU_RS00095 0.37 +0.3 21,921 - PFLU_RS00095 0.37 +0.2 22,105 + PFLU_RS00095 0.60 -0.3 22,105 + PFLU_RS00095 0.60 -0.3 22,167 + PFLU_RS00095 0.68 +0.0 22,167 + PFLU_RS00095 0.68 +0.3 22,168 - PFLU_RS00095 0.68 +0.7 22,168 - PFLU_RS00095 0.68 +0.9 22,189 + PFLU_RS00095 0.71 -0.1 22,190 - PFLU_RS00095 0.71 -0.8 22,254 + PFLU_RS00095 0.79 -0.4 22,255 - PFLU_RS00095 0.79 +0.4 22,328 + PFLU_RS00095 0.89 -0.2 22,343 + -1.2 22,344 - -0.4 22,344 - -0.6 22,344 - -0.0 22,344 - +0.8 22,415 + -1.3 22,415 + +0.5 22,415 + +0.3 22,415 + +0.5 22,415 + -1.7 22,415 + +0.5 22,416 - +0.2 22,416 - -0.9 22,416 - -0.4 22,416 - -0.8 22,416 - +0.5 22,416 - -0.3 22,419 + -0.6 22,419 + +1.0 22,419 + +0.4 22,427 + +0.4 22,427 + -0.4 22,427 + -1.4 22,427 + +0.3 22,428 - -0.4 22,431 + +0.4 22,431 + -0.1 22,436 + -0.8 22,437 - -0.0
Or see this region's nucleotide sequence