Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28690

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
6,382,123	-				+0.3
6,382,153	+				-0.2
6,382,210	+				-0.9
6,382,211	-				-0.3
6,382,217	+				+0.3
6,382,217	+				+0.7
6,382,218	-				+0.2
6,382,218	-				-0.5
6,382,315	+				-0.6
6,382,315	+				-0.7
6,382,315	+				-0.3
6,382,315	+				-0.0
6,382,316	-				-0.2
6,382,316	-				-0.4
6,382,316	-				+0.3
6,382,316	-				-0.3
6,382,316	-				+0.2
6,382,343	+				+0.9
6,382,343	+				-0.4
6,382,344	-				-0.8
6,382,344	-				-0.0
6,382,360	+				+0.2
6,382,361	-				+0.7
6,382,361	-				-0.7
6,382,690	+		PFLU_RS28685	0.39	-0.9
6,382,889	+		PFLU_RS28685	0.69	+0.8
6,382,889	+		PFLU_RS28685	0.69	-0.4
6,382,890	-		PFLU_RS28685	0.69	-0.9
6,382,890	-		PFLU_RS28685	0.69	+0.5
6,382,890	-		PFLU_RS28685	0.69	+0.0
6,382,959	+		PFLU_RS28685	0.79	-0.8
6,382,960	-		PFLU_RS28685	0.79	-0.4
6,383,019	-		PFLU_RS28685	0.88	+0.1
6,383,019	-		PFLU_RS28685	0.88	-0.1
6,383,022	+		PFLU_RS28685	0.89	+0.0
6,383,022	+		PFLU_RS28685	0.89	-0.7
6,383,023	-		PFLU_RS28685	0.89	+0.2
6,383,023	-		PFLU_RS28685	0.89	+0.4
6,383,023	-		PFLU_RS28685	0.89	+0.5
6,383,078	+				+0.5
6,383,078	+				+0.3
6,383,078	+				-0.2
6,383,078	+				+0.7
6,383,078	+				+0.0
6,383,078	+				+0.1
6,383,078	+				+0.9
6,383,078	+				+0.0
6,383,078	+				+0.5
6,383,078	+				+0.2
6,383,079	-				+0.9
6,383,079	-				+0.1
6,383,079	-				+0.1
6,383,079	-				-0.0
6,383,079	-				-0.1
6,383,079	-				+0.6
6,383,079	-				-0.1
6,383,079	-				+0.1
6,383,079	-				-0.2
6,383,079	-				-2.3
6,383,079	-				-0.2
6,383,079	-				+1.1
6,383,079	-				+0.1
6,383,079	-				+1.5
6,383,079	-				-0.6
6,383,079	-				+0.4
6,383,079	-				-0.2
6,383,079	-				+1.1
6,383,090	+				+0.5
6,383,090	+				+0.1
6,383,090	+				+0.3
6,383,091	-				+0.4
6,383,091	-				+0.8
6,383,091	-				+0.1
6,383,111	-				-0.4
6,383,111	-				+0.5
6,383,120	+				+0.6
6,383,189	+				-1.0
6,383,189	+				-1.3
6,383,190	-				-0.9
6,383,190	-				-1.0
6,383,190	-				-1.6
6,383,216	+				-0.9
6,383,216	+				-1.8
6,383,217	-				-2.2
6,383,217	-				+0.7
6,383,217	-				-0.4
6,383,225	+				-3.2
6,383,226	-				-1.5
6,383,276	+		PFLU_RS28690	0.11	-1.3
6,383,276	+		PFLU_RS28690	0.11	-1.1
6,383,277	-		PFLU_RS28690	0.11	-0.8
6,383,277	-		PFLU_RS28690	0.11	-2.1
6,383,297	-		PFLU_RS28690	0.13	-2.9
6,383,501	+		PFLU_RS28690	0.27	-2.8
6,383,502	-		PFLU_RS28690	0.27	-1.7
6,383,534	+		PFLU_RS28690	0.30	-1.7
6,383,534	+		PFLU_RS28690	0.30	+0.2
6,383,534	+		PFLU_RS28690	0.30	-2.5
6,383,534	+		PFLU_RS28690	0.30	-0.1
6,383,535	-		PFLU_RS28690	0.30	+0.3
6,383,535	-		PFLU_RS28690	0.30	+0.2
6,383,535	-		PFLU_RS28690	0.30	-1.4
6,383,535	-		PFLU_RS28690	0.30	-2.4
6,383,684	+		PFLU_RS28690	0.41	+0.5
6,383,684	+		PFLU_RS28690	0.41	-1.6
6,383,685	-		PFLU_RS28690	0.41	-0.7
6,383,685	-		PFLU_RS28690	0.41	-1.0
6,383,685	-		PFLU_RS28690	0.41	-1.0
6,383,986	+		PFLU_RS28690	0.62	-0.8
6,383,986	+		PFLU_RS28690	0.62	-1.1
6,383,987	-		PFLU_RS28690	0.62	-0.8
6,383,987	-		PFLU_RS28690	0.62	-1.6
6,383,987	-		PFLU_RS28690	0.62	-4.0
6,384,131	+		PFLU_RS28690	0.73	+0.5
6,384,131	+		PFLU_RS28690	0.73	-1.5
6,384,132	-		PFLU_RS28690	0.73	-1.1
6,384,234	+		PFLU_RS28690	0.80	-1.2
6,384,234	+		PFLU_RS28690	0.80	-0.2
6,384,234	+		PFLU_RS28690	0.80	-2.1
6,384,234	+		PFLU_RS28690	0.80	-1.0
6,384,234	+		PFLU_RS28690	0.80	-1.4
6,384,234	+		PFLU_RS28690	0.80	-1.8
6,384,234	+		PFLU_RS28690	0.80	-0.6
6,384,234	+		PFLU_RS28690	0.80	-1.4
6,384,234	+		PFLU_RS28690	0.80	-0.4
6,384,234	+		PFLU_RS28690	0.80	-1.8
6,384,235	-		PFLU_RS28690	0.80	-0.1
6,384,235	-		PFLU_RS28690	0.80	-0.9
6,384,235	-		PFLU_RS28690	0.80	-1.4
6,384,235	-		PFLU_RS28690	0.80	-1.3
6,384,235	-		PFLU_RS28690	0.80	+0.3
6,384,235	-		PFLU_RS28690	0.80	+1.2
6,384,235	-		PFLU_RS28690	0.80	-2.5
6,384,235	-		PFLU_RS28690	0.80	-1.0
6,384,235	-		PFLU_RS28690	0.80	-0.7
6,384,235	-		PFLU_RS28690	0.80	-0.6
6,384,235	-		PFLU_RS28690	0.80	-3.2
6,384,235	-		PFLU_RS28690	0.80	-1.1
6,384,235	-		PFLU_RS28690	0.80	-1.3
6,384,236	+		PFLU_RS28690	0.80	-1.0
6,384,236	+		PFLU_RS28690	0.80	+0.6
6,384,236	+		PFLU_RS28690	0.80	-3.1
6,384,236	+		PFLU_RS28690	0.80	-2.1
6,384,236	+		PFLU_RS28690	0.80	-1.2
6,384,236	+		PFLU_RS28690	0.80	-3.3
6,384,236	+		PFLU_RS28690	0.80	-0.9
6,384,237	-		PFLU_RS28690	0.80	+0.2
6,384,237	-		PFLU_RS28690	0.80	-1.2
6,384,237	-		PFLU_RS28690	0.80	-0.1
6,384,237	-		PFLU_RS28690	0.80	-0.5
6,384,237	-		PFLU_RS28690	0.80	-1.4
6,384,237	-		PFLU_RS28690	0.80	-0.5
6,384,237	-		PFLU_RS28690	0.80	-1.9
6,384,237	-		PFLU_RS28690	0.80	-2.3
6,384,237	-		PFLU_RS28690	0.80	-1.4
6,384,484	+				-0.3
6,384,484	+				-1.4
6,384,484	+				-0.5
6,384,484	+				-0.3
6,384,484	+				-1.6
6,384,484	+				-0.9
6,384,485	-				-0.7
6,384,485	-				-0.6
6,384,485	-				-1.7
6,384,485	-				-0.8
6,384,485	-				-2.6
6,384,485	-				-0.6
6,384,589	+		PFLU_RS31185	0.49	-0.8
6,384,590	-		PFLU_RS31185	0.49	+1.7
6,384,590	-		PFLU_RS31185	0.49	-1.5
6,384,594	+		PFLU_RS31185	0.52	-0.3
6,384,594	+		PFLU_RS31185	0.52	+0.8
6,384,595	-		PFLU_RS31185	0.52	-3.3
6,384,595	-		PFLU_RS31185	0.52	-0.5
6,384,595	-		PFLU_RS31185	0.52	-1.3
6,384,595	-		PFLU_RS31185	0.52	-2.1
6,384,595	-		PFLU_RS31185	0.52	-0.4
6,384,595	-		PFLU_RS31185	0.52	-0.4
6,384,595	-		PFLU_RS31185	0.52	-2.0
6,384,595	-		PFLU_RS31185	0.52	-2.6
6,384,599	+		PFLU_RS31185	0.54	+0.7
6,384,711	+				+0.5
6,384,712	-				-4.0
6,384,712	-				-2.3
6,384,738	+				-3.3
6,384,826	+				-3.2
6,384,826	+				-3.4
6,384,826	+				-1.4
6,384,826	+				-3.8
6,384,826	+				-2.7
6,384,826	+				-1.5
6,384,826	+				-0.7
6,384,826	+				-2.6
6,384,826	+				-1.7
6,384,826	+				-1.9
6,384,826	+				-1.7
6,384,826	+				-3.6
6,384,826	+				-1.4
6,384,827	-				-4.2
6,384,827	-				-3.0
6,384,827	-				-2.8
6,384,827	-				-0.8
6,384,827	-				-0.4
6,385,033	+		PFLU_RS28695	0.26	-3.1
6,385,033	+		PFLU_RS28695	0.26	-3.3
6,385,033	+		PFLU_RS28695	0.26	-3.0
6,385,033	+		PFLU_RS28695	0.26	-3.6
6,385,033	+		PFLU_RS28695	0.26	-3.4
6,385,255	+		PFLU_RS28695	0.44	-0.4
6,385,255	+		PFLU_RS28695	0.44	-2.3
6,385,256	-		PFLU_RS28695	0.44	-3.0
6,385,256	-		PFLU_RS28695	0.44	-3.2
6,385,256	-		PFLU_RS28695	0.44	-2.3