Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22760

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS22755 and PFLU_RS22760 are separated by 125 nucleotidesPFLU_RS22760 and PFLU_RS22765 are separated by 72 nucleotidesPFLU_RS22765 and PFLU_RS22770 are separated by 107 nucleotides PFLU_RS22755: PFLU_RS22755 - LysR family transcriptional regulator, at 5,123,527 to 5,124,450 _RS22755 PFLU_RS22760: PFLU_RS22760 - 3-oxoacyl-ACP reductase FabG, at 5,124,576 to 5,125,322 _RS22760 PFLU_RS22765: PFLU_RS22765 - HAD-IA family hydrolase, at 5,125,395 to 5,126,084 _RS22765 PFLU_RS22770: PFLU_RS22770 - DUF2784 domain-containing protein, at 5,126,192 to 5,126,557 _RS22770 Position (kb) 5124 5125 5126Strain fitness (log2 ratio) -2 -1 0 1 2at 5123.631 kb on - strand, within PFLU_RS22755at 5123.631 kb on - strand, within PFLU_RS22755at 5123.633 kb on + strand, within PFLU_RS22755at 5123.634 kb on - strand, within PFLU_RS22755at 5123.634 kb on - strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.660 kb on + strand, within PFLU_RS22755at 5123.661 kb on - strand, within PFLU_RS22755at 5123.661 kb on - strand, within PFLU_RS22755at 5123.661 kb on - strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.851 kb on + strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.852 kb on - strand, within PFLU_RS22755at 5123.939 kb on + strand, within PFLU_RS22755at 5123.940 kb on - strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5123.982 kb on + strand, within PFLU_RS22755at 5124.134 kb on + strand, within PFLU_RS22755at 5124.134 kb on + strand, within PFLU_RS22755at 5124.231 kb on + strand, within PFLU_RS22755at 5124.232 kb on - strand, within PFLU_RS22755at 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.484 kb on + strandat 5124.485 kb on - strandat 5124.485 kb on - strandat 5124.486 kb on + strandat 5124.486 kb on + strandat 5124.486 kb on + strandat 5124.487 kb on - strandat 5124.487 kb on - strandat 5124.526 kb on - strandat 5124.564 kb on + strandat 5124.564 kb on + strandat 5124.564 kb on + strandat 5124.565 kb on - strandat 5124.686 kb on + strand, within PFLU_RS22760at 5124.686 kb on + strand, within PFLU_RS22760at 5124.687 kb on - strand, within PFLU_RS22760at 5124.687 kb on - strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.690 kb on + strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.691 kb on - strand, within PFLU_RS22760at 5124.840 kb on - strand, within PFLU_RS22760at 5124.840 kb on - strand, within PFLU_RS22760at 5124.928 kb on + strand, within PFLU_RS22760at 5124.928 kb on + strand, within PFLU_RS22760at 5124.929 kb on - strand, within PFLU_RS22760at 5124.929 kb on - strand, within PFLU_RS22760at 5124.929 kb on - strand, within PFLU_RS22760at 5124.929 kb on - strand, within PFLU_RS22760at 5124.929 kb on - strand, within PFLU_RS22760at 5125.045 kb on - strand, within PFLU_RS22760at 5125.251 kb on + strandat 5125.251 kb on + strandat 5125.251 kb on + strandat 5125.251 kb on + strandat 5125.252 kb on - strandat 5125.275 kb on + strandat 5125.275 kb on + strandat 5125.276 kb on - strandat 5125.321 kb on - strandat 5125.392 kb on + strandat 5125.392 kb on + strandat 5125.471 kb on + strand, within PFLU_RS22765at 5125.471 kb on + strand, within PFLU_RS22765at 5125.471 kb on + strand, within PFLU_RS22765at 5125.471 kb on + strand, within PFLU_RS22765at 5125.472 kb on - strand, within PFLU_RS22765at 5125.472 kb on - strand, within PFLU_RS22765at 5125.758 kb on - strand, within PFLU_RS22765at 5125.758 kb on - strand, within PFLU_RS22765at 5125.868 kb on + strand, within PFLU_RS22765at 5125.868 kb on + strand, within PFLU_RS22765at 5125.868 kb on + strand, within PFLU_RS22765at 5125.868 kb on + strand, within PFLU_RS22765at 5125.869 kb on - strand, within PFLU_RS22765at 5125.897 kb on + strand, within PFLU_RS22765at 5125.897 kb on + strand, within PFLU_RS22765at 5125.897 kb on + strand, within PFLU_RS22765at 5125.898 kb on - strand, within PFLU_RS22765at 5125.898 kb on - strand, within PFLU_RS22765at 5125.898 kb on - strand, within PFLU_RS22765at 5125.898 kb on - strand, within PFLU_RS22765at 5125.898 kb on - strand, within PFLU_RS22765at 5125.954 kb on + strand, within PFLU_RS22765at 5125.955 kb on - strand, within PFLU_RS22765at 5125.955 kb on - strand, within PFLU_RS22765at 5125.955 kb on - strand, within PFLU_RS22765at 5125.955 kb on - strand, within PFLU_RS22765at 5125.999 kb on + strand, within PFLU_RS22765at 5126.109 kb on + strandat 5126.109 kb on + strandat 5126.109 kb on + strandat 5126.110 kb on - strandat 5126.110 kb on - strandat 5126.158 kb on + strandat 5126.158 kb on + strandat 5126.158 kb on + strandat 5126.159 kb on - strandat 5126.159 kb on - strandat 5126.159 kb on - strandat 5126.190 kb on + strandat 5126.191 kb on - strandat 5126.199 kb on - strandat 5126.205 kb on + strandat 5126.205 kb on + strandat 5126.205 kb on + strandat 5126.205 kb on + strandat 5126.205 kb on + strandat 5126.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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5,123,631 - PFLU_RS22755 0.11 +1.9
5,123,631 - PFLU_RS22755 0.11 +0.1
5,123,633 + PFLU_RS22755 0.11 +0.6
5,123,634 - PFLU_RS22755 0.12 -1.2
5,123,634 - PFLU_RS22755 0.12 +0.9
5,123,660 + PFLU_RS22755 0.14 +0.3
5,123,660 + PFLU_RS22755 0.14 +0.3
5,123,660 + PFLU_RS22755 0.14 +0.4
5,123,660 + PFLU_RS22755 0.14 -1.1
5,123,660 + PFLU_RS22755 0.14 -0.2
5,123,660 + PFLU_RS22755 0.14 -0.5
5,123,660 + PFLU_RS22755 0.14 -0.6
5,123,661 - PFLU_RS22755 0.15 +1.2
5,123,661 - PFLU_RS22755 0.15 +0.2
5,123,661 - PFLU_RS22755 0.15 +0.2
5,123,851 + PFLU_RS22755 0.35 -0.6
5,123,851 + PFLU_RS22755 0.35 +1.5
5,123,851 + PFLU_RS22755 0.35 +0.5
5,123,851 + PFLU_RS22755 0.35 -0.8
5,123,851 + PFLU_RS22755 0.35 +0.6
5,123,851 + PFLU_RS22755 0.35 +0.5
5,123,852 - PFLU_RS22755 0.35 -0.2
5,123,852 - PFLU_RS22755 0.35 +0.7
5,123,852 - PFLU_RS22755 0.35 +0.4
5,123,852 - PFLU_RS22755 0.35 +0.3
5,123,852 - PFLU_RS22755 0.35 -0.6
5,123,852 - PFLU_RS22755 0.35 +1.1
5,123,939 + PFLU_RS22755 0.45 +1.2
5,123,940 - PFLU_RS22755 0.45 +0.1
5,123,982 + PFLU_RS22755 0.49 +0.9
5,123,982 + PFLU_RS22755 0.49 -0.1
5,123,982 + PFLU_RS22755 0.49 +0.3
5,123,982 + PFLU_RS22755 0.49 +0.3
5,123,982 + PFLU_RS22755 0.49 +0.4
5,123,982 + PFLU_RS22755 0.49 +0.6
5,124,134 + PFLU_RS22755 0.66 +0.7
5,124,134 + PFLU_RS22755 0.66 -0.6
5,124,231 + PFLU_RS22755 0.76 +0.4
5,124,232 - PFLU_RS22755 0.76 +1.6
5,124,484 + +0.4
5,124,484 + -0.1
5,124,484 + +0.3
5,124,484 + -0.0
5,124,484 + +0.7
5,124,484 + +1.2
5,124,484 + -0.1
5,124,484 + +1.5
5,124,485 - -0.4
5,124,485 - +0.6
5,124,486 + -0.6
5,124,486 + +0.3
5,124,486 + +0.4
5,124,487 - -1.6
5,124,487 - +0.8
5,124,526 - +0.4
5,124,564 + -0.4
5,124,564 + -0.1
5,124,564 + +0.2
5,124,565 - -0.9
5,124,686 + PFLU_RS22760 0.15 -0.3
5,124,686 + PFLU_RS22760 0.15 +0.4
5,124,687 - PFLU_RS22760 0.15 +0.6
5,124,687 - PFLU_RS22760 0.15 +0.6
5,124,690 + PFLU_RS22760 0.15 -0.3
5,124,690 + PFLU_RS22760 0.15 +0.1
5,124,690 + PFLU_RS22760 0.15 -1.4
5,124,690 + PFLU_RS22760 0.15 +0.2
5,124,690 + PFLU_RS22760 0.15 +1.0
5,124,690 + PFLU_RS22760 0.15 -0.6
5,124,690 + PFLU_RS22760 0.15 +0.6
5,124,690 + PFLU_RS22760 0.15 +0.5
5,124,690 + PFLU_RS22760 0.15 -0.5
5,124,690 + PFLU_RS22760 0.15 +0.4
5,124,690 + PFLU_RS22760 0.15 +0.5
5,124,690 + PFLU_RS22760 0.15 +0.7
5,124,690 + PFLU_RS22760 0.15 +0.6
5,124,691 - PFLU_RS22760 0.15 -0.2
5,124,691 - PFLU_RS22760 0.15 +0.2
5,124,691 - PFLU_RS22760 0.15 -0.2
5,124,691 - PFLU_RS22760 0.15 +0.2
5,124,691 - PFLU_RS22760 0.15 +0.5
5,124,691 - PFLU_RS22760 0.15 -0.1
5,124,691 - PFLU_RS22760 0.15 +0.2
5,124,691 - PFLU_RS22760 0.15 -1.4
5,124,840 - PFLU_RS22760 0.35 +0.1
5,124,840 - PFLU_RS22760 0.35 -0.2
5,124,928 + PFLU_RS22760 0.47 -0.6
5,124,928 + PFLU_RS22760 0.47 -0.1
5,124,929 - PFLU_RS22760 0.47 -0.6
5,124,929 - PFLU_RS22760 0.47 -1.3
5,124,929 - PFLU_RS22760 0.47 +0.1
5,124,929 - PFLU_RS22760 0.47 -0.1
5,124,929 - PFLU_RS22760 0.47 -0.1
5,125,045 - PFLU_RS22760 0.63 +0.9
5,125,251 + +0.3
5,125,251 + +0.1
5,125,251 + -1.0
5,125,251 + +0.3
5,125,252 - +0.3
5,125,275 + -1.1
5,125,275 + -0.3
5,125,276 - -1.1
5,125,321 - +0.3
5,125,392 + +0.4
5,125,392 + +0.2
5,125,471 + PFLU_RS22765 0.11 -0.1
5,125,471 + PFLU_RS22765 0.11 +0.3
5,125,471 + PFLU_RS22765 0.11 -0.2
5,125,471 + PFLU_RS22765 0.11 -0.3
5,125,472 - PFLU_RS22765 0.11 +0.0
5,125,472 - PFLU_RS22765 0.11 +0.1
5,125,758 - PFLU_RS22765 0.53 -0.4
5,125,758 - PFLU_RS22765 0.53 -0.4
5,125,868 + PFLU_RS22765 0.69 -0.0
5,125,868 + PFLU_RS22765 0.69 -0.5
5,125,868 + PFLU_RS22765 0.69 -0.4
5,125,868 + PFLU_RS22765 0.69 +0.1
5,125,869 - PFLU_RS22765 0.69 +1.5
5,125,897 + PFLU_RS22765 0.73 -1.0
5,125,897 + PFLU_RS22765 0.73 +0.6
5,125,897 + PFLU_RS22765 0.73 +0.8
5,125,898 - PFLU_RS22765 0.73 -0.4
5,125,898 - PFLU_RS22765 0.73 +0.2
5,125,898 - PFLU_RS22765 0.73 +0.5
5,125,898 - PFLU_RS22765 0.73 -0.5
5,125,898 - PFLU_RS22765 0.73 -0.7
5,125,954 + PFLU_RS22765 0.81 +0.6
5,125,955 - PFLU_RS22765 0.81 -0.6
5,125,955 - PFLU_RS22765 0.81 -1.3
5,125,955 - PFLU_RS22765 0.81 +0.0
5,125,955 - PFLU_RS22765 0.81 -0.7
5,125,999 + PFLU_RS22765 0.88 -0.5
5,126,109 + +0.3
5,126,109 + +0.0
5,126,109 + +0.4
5,126,110 - +0.2
5,126,110 - -1.1
5,126,158 + -0.0
5,126,158 + -0.6
5,126,158 + -0.2
5,126,159 - +0.5
5,126,159 - +0.5
5,126,159 - +0.2
5,126,190 + -0.8
5,126,191 - +0.5
5,126,199 - -0.6
5,126,205 + -0.5
5,126,205 + +0.4
5,126,205 + -1.9
5,126,205 + +0.8
5,126,205 + +1.0
5,126,206 - -0.5

Or see this region's nucleotide sequence