Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21525

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
4,854,117	+		PFLU_RS21520	0.33	+0.2
4,854,118	-		PFLU_RS21520	0.33	-0.2
4,854,264	+		PFLU_RS21520	0.52	+0.3
4,854,265	-		PFLU_RS21520	0.52	-0.3
4,854,403	-		PFLU_RS21520	0.71	+0.2
4,854,558	+				+0.4
4,854,558	+				+0.3
4,854,558	+				+0.8
4,854,559	-				-0.4
4,854,559	-				-0.1
4,854,582	+				-1.4
4,854,583	-				-0.5
4,854,616	+				-1.0
4,854,616	+				+0.3
4,854,617	-				-1.2
4,854,617	-				+0.4
4,854,653	+				-0.4
4,854,653	+				+0.4
4,854,653	+				-0.5
4,854,653	+				-0.8
4,854,653	+				+0.1
4,854,653	+				-0.2
4,854,654	-				-0.0
4,854,654	-				-0.4
4,854,654	-				+0.2
4,854,654	-				-0.3
4,854,654	-				-0.5
4,854,654	-				+0.4
4,854,662	+				-0.8
4,854,751	+				-0.1
4,854,751	+				+0.0
4,854,751	+				+1.0
4,854,752	-				-1.2
4,854,752	-				+0.8
4,854,752	-				-0.7
4,854,752	-				-1.2
4,854,752	-				-1.9
4,854,752	-				+0.1
4,854,752	-				+1.1
4,854,752	-				-0.1
4,854,752	-				-1.0
4,854,752	-				-0.1
4,854,755	+				+0.9
4,854,766	+				+1.4
4,854,767	-				+0.6
4,854,803	+				+0.7
4,854,804	-				+0.8
4,854,804	-				-0.9
4,854,809	+				-0.0
4,854,809	+				+0.4
4,854,810	-				+0.1
4,854,810	-				+0.4
4,854,810	-				-0.2
4,854,810	-				+0.6
4,854,867	+				-0.9
4,854,867	+				-0.6
4,854,867	+				+0.6
4,854,867	+				-0.2
4,854,868	-				+1.1
4,854,937	+				-1.3
4,854,937	+				-1.4
4,854,938	-				-1.7
4,854,938	-				-0.0
4,854,938	-				+2.4
4,854,938	-				-0.2
4,855,048	+		PFLU_RS21525	0.22	+0.4
4,855,049	-		PFLU_RS21525	0.23	+0.5
4,855,049	-		PFLU_RS21525	0.23	+0.7
4,855,049	-		PFLU_RS21525	0.23	-0.8
4,855,049	-		PFLU_RS21525	0.23	+0.4
4,855,049	-		PFLU_RS21525	0.23	+0.5
4,855,049	-		PFLU_RS21525	0.23	-1.1
4,855,062	+		PFLU_RS21525	0.25	-0.4
4,855,062	+		PFLU_RS21525	0.25	+0.1
4,855,062	+		PFLU_RS21525	0.25	-0.3
4,855,062	+		PFLU_RS21525	0.25	-1.2
4,855,063	-		PFLU_RS21525	0.25	+1.1
4,855,063	-		PFLU_RS21525	0.25	-0.6
4,855,063	-		PFLU_RS21525	0.25	-0.6
4,855,119	+		PFLU_RS21525	0.35	+0.6
4,855,119	+		PFLU_RS21525	0.35	+0.3
4,855,119	+		PFLU_RS21525	0.35	-0.1
4,855,119	+		PFLU_RS21525	0.35	-0.6
4,855,119	+		PFLU_RS21525	0.35	+0.2
4,855,119	+		PFLU_RS21525	0.35	-0.2
4,855,120	-		PFLU_RS21525	0.36	+1.3
4,855,120	-		PFLU_RS21525	0.36	+0.9
4,855,120	-		PFLU_RS21525	0.36	-0.7
4,855,120	-		PFLU_RS21525	0.36	+1.2
4,855,120	-		PFLU_RS21525	0.36	+0.5
4,855,185	+		PFLU_RS21525	0.47	+1.1
4,855,185	+		PFLU_RS21525	0.47	+0.5
4,855,253	+		PFLU_RS21525	0.60	+0.6
4,855,253	+		PFLU_RS21525	0.60	+0.3
4,855,253	+		PFLU_RS21525	0.60	+0.4
4,855,329	+		PFLU_RS21525	0.73	+0.5
4,855,329	+		PFLU_RS21525	0.73	+0.0
4,855,329	+		PFLU_RS21525	0.73	+0.3
4,855,330	-		PFLU_RS21525	0.74	+0.6
4,855,330	-		PFLU_RS21525	0.74	+0.5
4,855,449	-				+0.9
4,855,454	+				+1.3
4,855,454	+				+0.8
4,855,454	+				-0.2
4,855,455	-				-0.4
4,855,455	-				-0.1
4,855,502	-				+0.8
4,855,502	-				-0.4
4,855,502	-				+0.7
4,855,502	-				+0.8
4,855,502	-				+0.7
4,855,502	-				-1.6
4,855,502	-				+0.3
4,855,621	+		PFLU_RS31750	0.61	-0.3
4,855,621	+		PFLU_RS31750	0.61	+0.6
4,855,621	+		PFLU_RS31750	0.61	+0.5
4,855,621	+		PFLU_RS31750	0.61	+0.1
4,855,621	+		PFLU_RS31750	0.61	-0.5
4,855,621	+		PFLU_RS31750	0.61	+1.2
4,855,621	+		PFLU_RS31750	0.61	-0.0
4,855,621	+		PFLU_RS31750	0.61	+0.8
4,855,622	-		PFLU_RS31750	0.62	-0.2
4,855,622	-		PFLU_RS31750	0.62	+0.0
4,855,622	-		PFLU_RS31750	0.62	-0.8
4,855,622	-		PFLU_RS31750	0.62	-0.3
4,855,622	-		PFLU_RS31750	0.62	+0.6
4,855,622	-		PFLU_RS31750	0.62	+0.0
4,855,622	-		PFLU_RS31750	0.62	+0.1
4,855,622	-		PFLU_RS31750	0.62	-0.3
4,855,766	+		PFLU_RS21530	0.18	-1.9
4,855,766	+		PFLU_RS21530	0.18	-0.3
4,855,766	+		PFLU_RS21530	0.18	-0.2
4,855,766	+		PFLU_RS21530	0.18	+1.0
4,855,766	+		PFLU_RS21530	0.18	+0.2
4,855,767	-		PFLU_RS21530	0.18	+0.2
4,855,767	-		PFLU_RS21530	0.18	-1.2
4,855,767	-		PFLU_RS21530	0.18	-1.9
4,855,767	-		PFLU_RS21530	0.18	-0.1
4,855,767	-		PFLU_RS21530	0.18	+0.7
4,855,767	-		PFLU_RS21530	0.18	+0.2
4,855,767	-		PFLU_RS21530	0.18	-0.7
4,855,827	+		PFLU_RS21530	0.25	-0.2
4,855,827	+		PFLU_RS21530	0.25	+0.2
4,855,827	+		PFLU_RS21530	0.25	+0.6
4,855,828	-		PFLU_RS21530	0.25	-1.1
4,855,828	-		PFLU_RS21530	0.25	+1.2
4,855,828	-		PFLU_RS21530	0.25	+0.1
4,855,828	-		PFLU_RS21530	0.25	+0.3
4,855,841	+		PFLU_RS21530	0.27	+0.7
4,855,842	-		PFLU_RS21530	0.27	+0.6
4,855,842	-		PFLU_RS21530	0.27	+1.0
4,855,910	+		PFLU_RS21530	0.36	-0.5
4,855,910	+		PFLU_RS21530	0.36	-0.2
4,855,910	+		PFLU_RS21530	0.36	+1.8
4,855,910	+		PFLU_RS21530	0.36	-0.6
4,855,911	-		PFLU_RS21530	0.36	+1.8
4,855,911	-		PFLU_RS21530	0.36	-0.2
4,855,911	-		PFLU_RS21530	0.36	+0.0
4,855,911	-		PFLU_RS21530	0.36	+1.7
4,855,943	+		PFLU_RS21530	0.40	+0.4
4,855,943	+		PFLU_RS21530	0.40	+0.9
4,855,943	+		PFLU_RS21530	0.40	-0.4
4,855,943	+		PFLU_RS21530	0.40	-0.2
4,855,943	+		PFLU_RS21530	0.40	-0.1
4,855,943	+		PFLU_RS21530	0.40	+0.1
4,855,943	+		PFLU_RS21530	0.40	-0.7
4,855,943	+		PFLU_RS21530	0.40	-0.1
4,855,943	+		PFLU_RS21530	0.40	-1.2
4,855,944	-		PFLU_RS21530	0.40	+0.8
4,855,944	-		PFLU_RS21530	0.40	-0.1
4,855,944	-		PFLU_RS21530	0.40	-0.7
4,855,944	-		PFLU_RS21530	0.40	+0.3
4,855,944	-		PFLU_RS21530	0.40	+1.6
4,855,944	-		PFLU_RS21530	0.40	-0.5
4,855,944	-		PFLU_RS21530	0.40	+0.3
4,855,944	-		PFLU_RS21530	0.40	+0.3
4,855,944	-		PFLU_RS21530	0.40	-0.6
4,855,944	-		PFLU_RS21530	0.40	+0.6
4,855,944	-		PFLU_RS21530	0.40	+0.2
4,855,976	+		PFLU_RS21530	0.44	-1.0
4,855,976	+		PFLU_RS21530	0.44	-0.3
4,855,977	-		PFLU_RS21530	0.44	+0.2
4,855,977	-		PFLU_RS21530	0.44	-0.8
4,856,028	-		PFLU_RS21530	0.51	-1.0
4,856,028	-		PFLU_RS21530	0.51	+0.6
4,856,028	-		PFLU_RS21530	0.51	+0.2
4,856,142	+		PFLU_RS21530	0.65	+0.5
4,856,216	+		PFLU_RS21530	0.75	+0.6
4,856,297	+		PFLU_RS21530	0.85	-0.3
4,856,297	+		PFLU_RS21530	0.85	+0.1
4,856,297	+		PFLU_RS21530	0.85	+0.8
4,856,382	+				+0.0
4,856,382	+				+1.7
4,856,382	+				-0.2
4,856,383	-				+0.5
4,856,383	-				-1.0
4,856,383	-				+0.0
4,856,383	-				+0.7
4,856,383	-				+0.4
4,856,442	-				-1.0
4,856,455	+				+1.1
4,856,456	-				-0.2
4,856,456	-				-0.2