Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20945 and PFLU_RS20950 are separated by 39 nucleotides PFLU_RS20950 and PFLU_RS20955 overlap by 4 nucleotides PFLU_RS20955 and PFLU_RS20960 are separated by 9 nucleotides
PFLU_RS20945: PFLU_RS20945 - acyl-CoA dehydrogenase, at 4,708,282 to 4,709,523
_RS20945
PFLU_RS20950: PFLU_RS20950 - acetylornithine deacetylase, at 4,709,563 to 4,710,714
_RS20950
PFLU_RS20955: PFLU_RS20955 - DUF1028 domain-containing protein, at 4,710,711 to 4,711,385
_RS20955
PFLU_RS20960: PFLU_RS20960 - hypothetical protein, at 4,711,395 to 4,712,126
_RS20960
Position (kb) 4709
4710
4711 Strain fitness (log2 ratio) -2
-1
0
1 at 4708.744 kb on - strand, within PFLU_RS20945 at 4708.828 kb on + strand, within PFLU_RS20945 at 4708.829 kb on - strand, within PFLU_RS20945 at 4709.006 kb on - strand, within PFLU_RS20945 at 4709.006 kb on - strand, within PFLU_RS20945 at 4709.164 kb on + strand, within PFLU_RS20945 at 4709.221 kb on + strand, within PFLU_RS20945 at 4709.221 kb on + strand, within PFLU_RS20945 at 4709.222 kb on - strand, within PFLU_RS20945 at 4709.222 kb on - strand, within PFLU_RS20945 at 4709.222 kb on - strand, within PFLU_RS20945 at 4709.440 kb on + strand at 4709.440 kb on + strand at 4709.441 kb on - strand at 4709.441 kb on - strand at 4709.464 kb on + strand at 4709.661 kb on + strand at 4709.891 kb on + strand, within PFLU_RS20950 at 4709.979 kb on + strand, within PFLU_RS20950 at 4710.127 kb on + strand, within PFLU_RS20950 at 4710.128 kb on - strand, within PFLU_RS20950 at 4710.144 kb on - strand, within PFLU_RS20950 at 4710.198 kb on + strand, within PFLU_RS20950 at 4710.320 kb on + strand, within PFLU_RS20950 at 4710.321 kb on - strand, within PFLU_RS20950 at 4710.321 kb on - strand, within PFLU_RS20950 at 4710.321 kb on - strand, within PFLU_RS20950 at 4710.398 kb on + strand, within PFLU_RS20950 at 4710.398 kb on + strand, within PFLU_RS20950 at 4710.398 kb on + strand, within PFLU_RS20950 at 4710.399 kb on - strand, within PFLU_RS20950 at 4710.399 kb on - strand, within PFLU_RS20950 at 4710.584 kb on + strand, within PFLU_RS20950 at 4710.584 kb on + strand, within PFLU_RS20950 at 4710.584 kb on + strand, within PFLU_RS20950 at 4710.584 kb on + strand, within PFLU_RS20950 at 4710.584 kb on + strand, within PFLU_RS20950 at 4710.585 kb on - strand, within PFLU_RS20950 at 4710.620 kb on + strand at 4710.620 kb on + strand at 4710.620 kb on + strand at 4710.621 kb on - strand at 4710.621 kb on - strand at 4710.621 kb on - strand at 4710.775 kb on + strand at 4710.776 kb on - strand at 4710.776 kb on - strand at 4711.151 kb on - strand, within PFLU_RS20955 at 4711.586 kb on + strand, within PFLU_RS20960
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,708,744 - PFLU_RS20945 0.37 -0.4 4,708,828 + PFLU_RS20945 0.44 +0.5 4,708,829 - PFLU_RS20945 0.44 -0.2 4,709,006 - PFLU_RS20945 0.58 +0.5 4,709,006 - PFLU_RS20945 0.58 -0.4 4,709,164 + PFLU_RS20945 0.71 +1.3 4,709,221 + PFLU_RS20945 0.76 +0.2 4,709,221 + PFLU_RS20945 0.76 +1.3 4,709,222 - PFLU_RS20945 0.76 -0.6 4,709,222 - PFLU_RS20945 0.76 +0.8 4,709,222 - PFLU_RS20945 0.76 -0.6 4,709,440 + +0.4 4,709,440 + +0.3 4,709,441 - -0.3 4,709,441 - -0.6 4,709,464 + +0.0 4,709,661 + +0.2 4,709,891 + PFLU_RS20950 0.28 +0.6 4,709,979 + PFLU_RS20950 0.36 +0.1 4,710,127 + PFLU_RS20950 0.49 -1.0 4,710,128 - PFLU_RS20950 0.49 +0.5 4,710,144 - PFLU_RS20950 0.50 +0.6 4,710,198 + PFLU_RS20950 0.55 -0.3 4,710,320 + PFLU_RS20950 0.66 +0.2 4,710,321 - PFLU_RS20950 0.66 -1.5 4,710,321 - PFLU_RS20950 0.66 +0.2 4,710,321 - PFLU_RS20950 0.66 -0.6 4,710,398 + PFLU_RS20950 0.72 +0.7 4,710,398 + PFLU_RS20950 0.72 +0.3 4,710,398 + PFLU_RS20950 0.72 -0.8 4,710,399 - PFLU_RS20950 0.73 +0.3 4,710,399 - PFLU_RS20950 0.73 -0.6 4,710,584 + PFLU_RS20950 0.89 -0.0 4,710,584 + PFLU_RS20950 0.89 -1.9 4,710,584 + PFLU_RS20950 0.89 +0.5 4,710,584 + PFLU_RS20950 0.89 -1.3 4,710,584 + PFLU_RS20950 0.89 +0.3 4,710,585 - PFLU_RS20950 0.89 -0.2 4,710,620 + -1.3 4,710,620 + +0.5 4,710,620 + -0.1 4,710,621 - -0.5 4,710,621 - +0.7 4,710,621 - -0.6 4,710,775 + +0.6 4,710,776 - -0.7 4,710,776 - +0.2 4,711,151 - PFLU_RS20955 0.65 -0.0 4,711,586 + PFLU_RS20960 0.26 -1.3
Or see this region's nucleotide sequence