Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19250

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19245 and PFLU_RS19250 are separated by 591 nucleotidesPFLU_RS19250 and PFLU_RS19255 are separated by 130 nucleotides PFLU_RS19245: PFLU_RS19245 - NCS1 family nucleobase:cation symporter-1, at 4,351,106 to 4,352,593 _RS19245 PFLU_RS19250: PFLU_RS19250 - dihydropyrimidinase, at 4,353,185 to 4,354,624 _RS19250 PFLU_RS19255: PFLU_RS19255 - NAD(P)-dependent oxidoreductase, at 4,354,755 to 4,356,122 _RS19255 Position (kb) 4353 4354 4355Strain fitness (log2 ratio) -2 -1 0 1at 4352.283 kb on + strand, within PFLU_RS19245at 4352.383 kb on - strand, within PFLU_RS19245at 4352.407 kb on + strand, within PFLU_RS19245at 4352.407 kb on + strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.408 kb on - strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.409 kb on + strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.410 kb on - strand, within PFLU_RS19245at 4352.508 kb on + strandat 4352.509 kb on - strandat 4352.509 kb on - strandat 4352.509 kb on - strandat 4352.550 kb on + strandat 4352.551 kb on - strandat 4352.618 kb on + strandat 4352.618 kb on + strandat 4352.619 kb on - strandat 4352.619 kb on - strandat 4352.619 kb on - strandat 4352.666 kb on - strandat 4352.748 kb on + strandat 4352.748 kb on + strandat 4352.748 kb on + strandat 4352.749 kb on - strandat 4352.750 kb on + strandat 4352.750 kb on + strandat 4352.751 kb on - strandat 4352.752 kb on + strandat 4352.752 kb on + strandat 4352.753 kb on - strandat 4352.753 kb on - strandat 4352.753 kb on - strandat 4352.818 kb on + strandat 4352.819 kb on - strandat 4352.825 kb on + strandat 4352.825 kb on + strandat 4352.878 kb on - strandat 4352.878 kb on - strandat 4353.087 kb on - strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.135 kb on + strandat 4353.136 kb on - strandat 4353.136 kb on - strandat 4353.136 kb on - strandat 4353.136 kb on - strandat 4353.136 kb on - strandat 4353.144 kb on + strandat 4353.144 kb on + strandat 4353.144 kb on + strandat 4353.144 kb on + strandat 4353.145 kb on - strandat 4353.145 kb on - strandat 4353.145 kb on - strandat 4353.312 kb on + strandat 4353.332 kb on + strand, within PFLU_RS19250at 4353.333 kb on - strand, within PFLU_RS19250at 4353.445 kb on + strand, within PFLU_RS19250at 4353.445 kb on + strand, within PFLU_RS19250at 4353.445 kb on + strand, within PFLU_RS19250at 4353.446 kb on - strand, within PFLU_RS19250at 4353.542 kb on + strand, within PFLU_RS19250at 4353.543 kb on - strand, within PFLU_RS19250at 4353.563 kb on - strand, within PFLU_RS19250at 4353.648 kb on - strand, within PFLU_RS19250at 4353.755 kb on + strand, within PFLU_RS19250at 4353.756 kb on - strand, within PFLU_RS19250at 4353.890 kb on + strand, within PFLU_RS19250at 4353.935 kb on + strand, within PFLU_RS19250at 4353.935 kb on + strand, within PFLU_RS19250at 4353.935 kb on + strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.936 kb on - strand, within PFLU_RS19250at 4353.962 kb on + strand, within PFLU_RS19250at 4353.962 kb on + strand, within PFLU_RS19250at 4353.962 kb on + strand, within PFLU_RS19250at 4353.963 kb on - strand, within PFLU_RS19250at 4353.963 kb on - strand, within PFLU_RS19250at 4353.963 kb on - strand, within PFLU_RS19250at 4353.963 kb on - strand, within PFLU_RS19250at 4354.008 kb on - strand, within PFLU_RS19250at 4354.041 kb on - strand, within PFLU_RS19250at 4354.432 kb on + strand, within PFLU_RS19250at 4354.433 kb on - strand, within PFLU_RS19250at 4354.433 kb on - strand, within PFLU_RS19250at 4354.539 kb on - strandat 4354.556 kb on + strandat 4354.691 kb on + strandat 4354.882 kb on - strandat 4354.882 kb on - strandat 4354.882 kb on - strandat 4354.882 kb on - strandat 4355.115 kb on + strand, within PFLU_RS19255at 4355.116 kb on - strand, within PFLU_RS19255at 4355.116 kb on - strand, within PFLU_RS19255at 4355.116 kb on - strand, within PFLU_RS19255at 4355.310 kb on + strand, within PFLU_RS19255at 4355.310 kb on + strand, within PFLU_RS19255at 4355.526 kb on + strand, within PFLU_RS19255at 4355.526 kb on + strand, within PFLU_RS19255at 4355.526 kb on + strand, within PFLU_RS19255at 4355.526 kb on + strand, within PFLU_RS19255at 4355.526 kb on + strand, within PFLU_RS19255at 4355.527 kb on - strand, within PFLU_RS19255at 4355.527 kb on - strand, within PFLU_RS19255at 4355.527 kb on - strand, within PFLU_RS19255at 4355.527 kb on - strand, within PFLU_RS19255

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,352,283 + PFLU_RS19245 0.79 +1.3
4,352,383 - PFLU_RS19245 0.86 -0.5
4,352,407 + PFLU_RS19245 0.87 +0.3
4,352,407 + PFLU_RS19245 0.87 +0.3
4,352,408 - PFLU_RS19245 0.88 -0.5
4,352,408 - PFLU_RS19245 0.88 -1.0
4,352,408 - PFLU_RS19245 0.88 +1.0
4,352,408 - PFLU_RS19245 0.88 +1.0
4,352,408 - PFLU_RS19245 0.88 +0.7
4,352,408 - PFLU_RS19245 0.88 +0.6
4,352,409 + PFLU_RS19245 0.88 +0.6
4,352,409 + PFLU_RS19245 0.88 -0.4
4,352,409 + PFLU_RS19245 0.88 +0.4
4,352,409 + PFLU_RS19245 0.88 -0.8
4,352,409 + PFLU_RS19245 0.88 +1.1
4,352,409 + PFLU_RS19245 0.88 +0.1
4,352,409 + PFLU_RS19245 0.88 -0.6
4,352,409 + PFLU_RS19245 0.88 +0.3
4,352,409 + PFLU_RS19245 0.88 +1.7
4,352,409 + PFLU_RS19245 0.88 -0.5
4,352,409 + PFLU_RS19245 0.88 -0.0
4,352,409 + PFLU_RS19245 0.88 +1.1
4,352,409 + PFLU_RS19245 0.88 -0.8
4,352,409 + PFLU_RS19245 0.88 +0.7
4,352,409 + PFLU_RS19245 0.88 +0.5
4,352,410 - PFLU_RS19245 0.88 -1.0
4,352,410 - PFLU_RS19245 0.88 +0.6
4,352,410 - PFLU_RS19245 0.88 +0.3
4,352,410 - PFLU_RS19245 0.88 -0.1
4,352,410 - PFLU_RS19245 0.88 -0.1
4,352,410 - PFLU_RS19245 0.88 -0.2
4,352,410 - PFLU_RS19245 0.88 -1.8
4,352,410 - PFLU_RS19245 0.88 -1.0
4,352,410 - PFLU_RS19245 0.88 -0.6
4,352,410 - PFLU_RS19245 0.88 -0.2
4,352,410 - PFLU_RS19245 0.88 +0.4
4,352,410 - PFLU_RS19245 0.88 +0.5
4,352,410 - PFLU_RS19245 0.88 -0.1
4,352,410 - PFLU_RS19245 0.88 +0.1
4,352,508 + -0.3
4,352,509 - -0.5
4,352,509 - +0.2
4,352,509 - +0.1
4,352,550 + -0.5
4,352,551 - +0.6
4,352,618 + +0.1
4,352,618 + -1.9
4,352,619 - +1.0
4,352,619 - +1.1
4,352,619 - +0.3
4,352,666 - -0.1
4,352,748 + +1.5
4,352,748 + -0.4
4,352,748 + +0.4
4,352,749 - -0.2
4,352,750 + +0.1
4,352,750 + -1.0
4,352,751 - -0.5
4,352,752 + +0.2
4,352,752 + +0.5
4,352,753 - +0.3
4,352,753 - -0.1
4,352,753 - +0.8
4,352,818 + -0.2
4,352,819 - -1.0
4,352,825 + -0.2
4,352,825 + +0.7
4,352,878 - -1.4
4,352,878 - +1.0
4,353,087 - -0.8
4,353,135 + -1.1
4,353,135 + +0.2
4,353,135 + +1.0
4,353,135 + -0.7
4,353,135 + +0.5
4,353,135 + -0.4
4,353,135 + -0.1
4,353,136 - +1.0
4,353,136 - +0.2
4,353,136 - -0.1
4,353,136 - -1.4
4,353,136 - +0.5
4,353,144 + +1.1
4,353,144 + +0.1
4,353,144 + -0.8
4,353,144 + +0.8
4,353,145 - +0.2
4,353,145 - +0.1
4,353,145 - +0.4
4,353,312 + -0.9
4,353,332 + PFLU_RS19250 0.10 +0.9
4,353,333 - PFLU_RS19250 0.10 +0.0
4,353,445 + PFLU_RS19250 0.18 -0.2
4,353,445 + PFLU_RS19250 0.18 +0.4
4,353,445 + PFLU_RS19250 0.18 +0.5
4,353,446 - PFLU_RS19250 0.18 -1.9
4,353,542 + PFLU_RS19250 0.25 +0.3
4,353,543 - PFLU_RS19250 0.25 -0.0
4,353,563 - PFLU_RS19250 0.26 -0.7
4,353,648 - PFLU_RS19250 0.32 -0.7
4,353,755 + PFLU_RS19250 0.40 -0.3
4,353,756 - PFLU_RS19250 0.40 +0.1
4,353,890 + PFLU_RS19250 0.49 +0.8
4,353,935 + PFLU_RS19250 0.52 +0.4
4,353,935 + PFLU_RS19250 0.52 +0.0
4,353,935 + PFLU_RS19250 0.52 -0.3
4,353,936 - PFLU_RS19250 0.52 -0.0
4,353,936 - PFLU_RS19250 0.52 -0.4
4,353,936 - PFLU_RS19250 0.52 +0.6
4,353,936 - PFLU_RS19250 0.52 +0.7
4,353,936 - PFLU_RS19250 0.52 -0.3
4,353,936 - PFLU_RS19250 0.52 -0.7
4,353,936 - PFLU_RS19250 0.52 -0.9
4,353,962 + PFLU_RS19250 0.54 +0.0
4,353,962 + PFLU_RS19250 0.54 -1.6
4,353,962 + PFLU_RS19250 0.54 +0.5
4,353,963 - PFLU_RS19250 0.54 -1.2
4,353,963 - PFLU_RS19250 0.54 +0.4
4,353,963 - PFLU_RS19250 0.54 +0.6
4,353,963 - PFLU_RS19250 0.54 -0.0
4,354,008 - PFLU_RS19250 0.57 -0.4
4,354,041 - PFLU_RS19250 0.59 -0.9
4,354,432 + PFLU_RS19250 0.87 +0.6
4,354,433 - PFLU_RS19250 0.87 -0.0
4,354,433 - PFLU_RS19250 0.87 +0.3
4,354,539 - +0.2
4,354,556 + +0.4
4,354,691 + -0.4
4,354,882 - +1.3
4,354,882 - +0.5
4,354,882 - +0.3
4,354,882 - -1.1
4,355,115 + PFLU_RS19255 0.26 +0.8
4,355,116 - PFLU_RS19255 0.26 +0.2
4,355,116 - PFLU_RS19255 0.26 -0.3
4,355,116 - PFLU_RS19255 0.26 +0.8
4,355,310 + PFLU_RS19255 0.41 -0.3
4,355,310 + PFLU_RS19255 0.41 -0.4
4,355,526 + PFLU_RS19255 0.56 -1.0
4,355,526 + PFLU_RS19255 0.56 +0.8
4,355,526 + PFLU_RS19255 0.56 -0.2
4,355,526 + PFLU_RS19255 0.56 -0.3
4,355,526 + PFLU_RS19255 0.56 -0.1
4,355,527 - PFLU_RS19255 0.56 +0.4
4,355,527 - PFLU_RS19255 0.56 -0.5
4,355,527 - PFLU_RS19255 0.56 -0.8
4,355,527 - PFLU_RS19255 0.56 -0.1

Or see this region's nucleotide sequence