Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16395

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS16385 and PFLU_RS16390 are separated by 110 nucleotidesPFLU_RS16390 and PFLU_RS16395 overlap by 4 nucleotidesPFLU_RS16395 and PFLU_RS16400 are separated by 44 nucleotides PFLU_RS16385: PFLU_RS16385 - SRPBCC family protein, at 3,716,678 to 3,717,136 _RS16385 PFLU_RS16390: PFLU_RS16390 - DUF411 domain-containing protein, at 3,717,247 to 3,717,693 _RS16390 PFLU_RS16395: PFLU_RS16395 - DedA family protein, at 3,717,690 to 3,718,133 _RS16395 PFLU_RS16400: PFLU_RS16400 - alpha/beta hydrolase, at 3,718,178 to 3,719,179 _RS16400 Position (kb) 3717 3718 3719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3716.757 kb on - strand, within PFLU_RS16385at 3716.757 kb on - strand, within PFLU_RS16385at 3716.757 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.763 kb on - strand, within PFLU_RS16385at 3716.978 kb on + strand, within PFLU_RS16385at 3716.978 kb on + strand, within PFLU_RS16385at 3716.979 kb on - strand, within PFLU_RS16385at 3716.979 kb on - strand, within PFLU_RS16385at 3717.021 kb on + strand, within PFLU_RS16385at 3717.021 kb on + strand, within PFLU_RS16385at 3717.022 kb on - strand, within PFLU_RS16385at 3717.030 kb on - strand, within PFLU_RS16385at 3717.030 kb on - strand, within PFLU_RS16385at 3717.030 kb on - strand, within PFLU_RS16385at 3717.030 kb on - strand, within PFLU_RS16385at 3717.148 kb on + strandat 3717.628 kb on + strand, within PFLU_RS16390at 3717.628 kb on + strand, within PFLU_RS16390at 3717.628 kb on + strand, within PFLU_RS16390at 3717.742 kb on + strand, within PFLU_RS16395at 3717.742 kb on + strand, within PFLU_RS16395at 3717.742 kb on + strand, within PFLU_RS16395at 3717.743 kb on - strand, within PFLU_RS16395at 3717.743 kb on - strand, within PFLU_RS16395at 3717.743 kb on - strand, within PFLU_RS16395at 3717.743 kb on - strand, within PFLU_RS16395at 3717.745 kb on + strand, within PFLU_RS16395at 3717.745 kb on + strand, within PFLU_RS16395at 3717.796 kb on - strand, within PFLU_RS16395at 3718.054 kb on + strand, within PFLU_RS16395at 3718.054 kb on + strand, within PFLU_RS16395at 3718.055 kb on - strand, within PFLU_RS16395at 3718.055 kb on - strand, within PFLU_RS16395at 3718.120 kb on + strandat 3718.121 kb on - strandat 3718.121 kb on - strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.131 kb on + strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.132 kb on - strandat 3718.157 kb on - strandat 3718.157 kb on - strandat 3718.250 kb on + strandat 3718.250 kb on + strandat 3718.250 kb on + strandat 3718.251 kb on - strandat 3718.251 kb on - strandat 3718.251 kb on - strandat 3718.251 kb on - strandat 3718.251 kb on - strandat 3718.251 kb on - strandat 3718.337 kb on + strand, within PFLU_RS16400at 3718.337 kb on + strand, within PFLU_RS16400at 3718.338 kb on - strand, within PFLU_RS16400at 3718.338 kb on - strand, within PFLU_RS16400at 3718.339 kb on + strand, within PFLU_RS16400at 3718.339 kb on + strand, within PFLU_RS16400at 3718.340 kb on - strand, within PFLU_RS16400at 3718.340 kb on - strand, within PFLU_RS16400at 3718.340 kb on - strand, within PFLU_RS16400at 3718.512 kb on - strand, within PFLU_RS16400at 3718.512 kb on - strand, within PFLU_RS16400at 3718.517 kb on + strand, within PFLU_RS16400at 3718.517 kb on + strand, within PFLU_RS16400at 3718.517 kb on + strand, within PFLU_RS16400at 3718.518 kb on - strand, within PFLU_RS16400at 3718.541 kb on - strand, within PFLU_RS16400at 3718.541 kb on - strand, within PFLU_RS16400at 3718.637 kb on + strand, within PFLU_RS16400at 3718.637 kb on + strand, within PFLU_RS16400at 3718.638 kb on - strand, within PFLU_RS16400at 3718.638 kb on - strand, within PFLU_RS16400at 3718.733 kb on + strand, within PFLU_RS16400at 3718.734 kb on - strand, within PFLU_RS16400at 3718.775 kb on + strand, within PFLU_RS16400at 3718.775 kb on + strand, within PFLU_RS16400at 3718.775 kb on + strand, within PFLU_RS16400at 3718.775 kb on + strand, within PFLU_RS16400at 3718.776 kb on - strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.790 kb on + strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.791 kb on - strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.793 kb on + strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.794 kb on - strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.838 kb on + strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.839 kb on - strand, within PFLU_RS16400at 3718.867 kb on + strand, within PFLU_RS16400at 3718.925 kb on + strand, within PFLU_RS16400at 3718.925 kb on + strand, within PFLU_RS16400at 3718.926 kb on - strand, within PFLU_RS16400at 3718.926 kb on - strand, within PFLU_RS16400at 3718.926 kb on - strand, within PFLU_RS16400at 3718.926 kb on - strand, within PFLU_RS16400at 3718.926 kb on - strand, within PFLU_RS16400at 3718.928 kb on + strand, within PFLU_RS16400at 3718.928 kb on + strand, within PFLU_RS16400at 3718.928 kb on + strand, within PFLU_RS16400at 3718.929 kb on - strand, within PFLU_RS16400at 3718.929 kb on - strand, within PFLU_RS16400at 3719.039 kb on + strand, within PFLU_RS16400at 3719.040 kb on - strand, within PFLU_RS16400at 3719.040 kb on - strand, within PFLU_RS16400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
3,716,757 - PFLU_RS16385 0.17 +0.5
3,716,757 - PFLU_RS16385 0.17 +1.0
3,716,757 - PFLU_RS16385 0.17 +1.3
3,716,763 - PFLU_RS16385 0.19 +0.2
3,716,763 - PFLU_RS16385 0.19 -2.1
3,716,763 - PFLU_RS16385 0.19 -0.0
3,716,763 - PFLU_RS16385 0.19 +0.8
3,716,763 - PFLU_RS16385 0.19 +0.4
3,716,763 - PFLU_RS16385 0.19 -0.1
3,716,978 + PFLU_RS16385 0.65 -0.8
3,716,978 + PFLU_RS16385 0.65 +0.3
3,716,979 - PFLU_RS16385 0.66 +0.2
3,716,979 - PFLU_RS16385 0.66 +0.3
3,717,021 + PFLU_RS16385 0.75 +0.1
3,717,021 + PFLU_RS16385 0.75 -0.2
3,717,022 - PFLU_RS16385 0.75 +0.8
3,717,030 - PFLU_RS16385 0.77 +0.4
3,717,030 - PFLU_RS16385 0.77 +0.2
3,717,030 - PFLU_RS16385 0.77 +0.5
3,717,030 - PFLU_RS16385 0.77 +1.0
3,717,148 + -0.8
3,717,628 + PFLU_RS16390 0.85 +0.4
3,717,628 + PFLU_RS16390 0.85 +0.1
3,717,628 + PFLU_RS16390 0.85 +0.6
3,717,742 + PFLU_RS16395 0.12 +0.8
3,717,742 + PFLU_RS16395 0.12 -1.4
3,717,742 + PFLU_RS16395 0.12 +0.5
3,717,743 - PFLU_RS16395 0.12 +0.5
3,717,743 - PFLU_RS16395 0.12 +0.3
3,717,743 - PFLU_RS16395 0.12 -0.4
3,717,743 - PFLU_RS16395 0.12 +0.2
3,717,745 + PFLU_RS16395 0.12 +0.0
3,717,745 + PFLU_RS16395 0.12 +0.0
3,717,796 - PFLU_RS16395 0.24 -0.9
3,718,054 + PFLU_RS16395 0.82 -0.6
3,718,054 + PFLU_RS16395 0.82 -0.1
3,718,055 - PFLU_RS16395 0.82 -0.1
3,718,055 - PFLU_RS16395 0.82 -0.3
3,718,120 + -0.3
3,718,121 - +0.7
3,718,121 - -0.0
3,718,131 + +1.0
3,718,131 + -0.4
3,718,131 + -0.2
3,718,131 + -1.2
3,718,131 + +0.5
3,718,131 + +0.3
3,718,131 + +0.7
3,718,132 - -0.7
3,718,132 - -0.5
3,718,132 - -0.6
3,718,132 - -0.2
3,718,132 - +0.6
3,718,132 - +0.7
3,718,132 - +1.6
3,718,157 - -0.7
3,718,157 - -0.1
3,718,250 + +0.3
3,718,250 + -0.6
3,718,250 + -1.8
3,718,251 - +0.1
3,718,251 - +0.9
3,718,251 - +0.2
3,718,251 - +0.4
3,718,251 - -0.0
3,718,251 - +0.1
3,718,337 + PFLU_RS16400 0.16 +0.9
3,718,337 + PFLU_RS16400 0.16 +0.1
3,718,338 - PFLU_RS16400 0.16 +2.0
3,718,338 - PFLU_RS16400 0.16 +1.0
3,718,339 + PFLU_RS16400 0.16 +0.4
3,718,339 + PFLU_RS16400 0.16 +0.5
3,718,340 - PFLU_RS16400 0.16 -0.3
3,718,340 - PFLU_RS16400 0.16 -0.6
3,718,340 - PFLU_RS16400 0.16 -1.2
3,718,512 - PFLU_RS16400 0.33 +0.2
3,718,512 - PFLU_RS16400 0.33 +1.2
3,718,517 + PFLU_RS16400 0.34 +0.8
3,718,517 + PFLU_RS16400 0.34 +0.4
3,718,517 + PFLU_RS16400 0.34 +0.1
3,718,518 - PFLU_RS16400 0.34 +1.0
3,718,541 - PFLU_RS16400 0.36 +0.2
3,718,541 - PFLU_RS16400 0.36 -0.2
3,718,637 + PFLU_RS16400 0.46 +0.1
3,718,637 + PFLU_RS16400 0.46 -0.5
3,718,638 - PFLU_RS16400 0.46 -0.6
3,718,638 - PFLU_RS16400 0.46 -1.1
3,718,733 + PFLU_RS16400 0.55 -0.2
3,718,734 - PFLU_RS16400 0.55 +0.2
3,718,775 + PFLU_RS16400 0.60 -0.3
3,718,775 + PFLU_RS16400 0.60 +0.1
3,718,775 + PFLU_RS16400 0.60 +0.6
3,718,775 + PFLU_RS16400 0.60 -0.8
3,718,776 - PFLU_RS16400 0.60 +0.2
3,718,790 + PFLU_RS16400 0.61 +0.1
3,718,790 + PFLU_RS16400 0.61 +0.9
3,718,790 + PFLU_RS16400 0.61 +0.1
3,718,790 + PFLU_RS16400 0.61 -0.4
3,718,790 + PFLU_RS16400 0.61 -1.3
3,718,790 + PFLU_RS16400 0.61 -1.0
3,718,790 + PFLU_RS16400 0.61 -0.1
3,718,790 + PFLU_RS16400 0.61 +1.6
3,718,790 + PFLU_RS16400 0.61 +0.5
3,718,790 + PFLU_RS16400 0.61 +0.5
3,718,790 + PFLU_RS16400 0.61 +0.3
3,718,790 + PFLU_RS16400 0.61 +0.2
3,718,790 + PFLU_RS16400 0.61 +0.7
3,718,790 + PFLU_RS16400 0.61 +1.7
3,718,790 + PFLU_RS16400 0.61 +0.5
3,718,790 + PFLU_RS16400 0.61 +0.5
3,718,790 + PFLU_RS16400 0.61 +1.3
3,718,790 + PFLU_RS16400 0.61 -0.8
3,718,790 + PFLU_RS16400 0.61 -0.1
3,718,790 + PFLU_RS16400 0.61 -1.7
3,718,790 + PFLU_RS16400 0.61 -0.3
3,718,790 + PFLU_RS16400 0.61 +0.7
3,718,790 + PFLU_RS16400 0.61 -1.7
3,718,790 + PFLU_RS16400 0.61 +0.1
3,718,790 + PFLU_RS16400 0.61 -0.5
3,718,790 + PFLU_RS16400 0.61 +1.1
3,718,790 + PFLU_RS16400 0.61 -0.1
3,718,791 - PFLU_RS16400 0.61 -0.5
3,718,791 - PFLU_RS16400 0.61 -0.2
3,718,791 - PFLU_RS16400 0.61 +0.1
3,718,791 - PFLU_RS16400 0.61 +0.1
3,718,791 - PFLU_RS16400 0.61 +0.2
3,718,791 - PFLU_RS16400 0.61 +0.5
3,718,791 - PFLU_RS16400 0.61 +0.5
3,718,791 - PFLU_RS16400 0.61 +1.2
3,718,791 - PFLU_RS16400 0.61 -0.3
3,718,791 - PFLU_RS16400 0.61 -0.2
3,718,791 - PFLU_RS16400 0.61 +0.9
3,718,793 + PFLU_RS16400 0.61 +0.7
3,718,793 + PFLU_RS16400 0.61 -0.7
3,718,793 + PFLU_RS16400 0.61 +0.3
3,718,793 + PFLU_RS16400 0.61 +0.5
3,718,793 + PFLU_RS16400 0.61 -0.6
3,718,793 + PFLU_RS16400 0.61 -0.1
3,718,793 + PFLU_RS16400 0.61 -0.2
3,718,793 + PFLU_RS16400 0.61 +0.6
3,718,793 + PFLU_RS16400 0.61 -1.4
3,718,793 + PFLU_RS16400 0.61 -3.4
3,718,793 + PFLU_RS16400 0.61 +0.3
3,718,794 - PFLU_RS16400 0.61 +1.6
3,718,794 - PFLU_RS16400 0.61 +0.1
3,718,794 - PFLU_RS16400 0.61 +1.0
3,718,794 - PFLU_RS16400 0.61 +0.9
3,718,794 - PFLU_RS16400 0.61 +0.6
3,718,794 - PFLU_RS16400 0.61 +0.1
3,718,794 - PFLU_RS16400 0.61 -1.0
3,718,838 + PFLU_RS16400 0.66 -1.4
3,718,838 + PFLU_RS16400 0.66 +0.8
3,718,838 + PFLU_RS16400 0.66 +1.8
3,718,838 + PFLU_RS16400 0.66 -0.4
3,718,838 + PFLU_RS16400 0.66 -0.4
3,718,838 + PFLU_RS16400 0.66 +1.3
3,718,838 + PFLU_RS16400 0.66 +0.4
3,718,838 + PFLU_RS16400 0.66 +0.1
3,718,838 + PFLU_RS16400 0.66 -0.0
3,718,838 + PFLU_RS16400 0.66 +0.8
3,718,838 + PFLU_RS16400 0.66 -0.7
3,718,839 - PFLU_RS16400 0.66 +0.1
3,718,839 - PFLU_RS16400 0.66 -1.0
3,718,839 - PFLU_RS16400 0.66 +0.5
3,718,839 - PFLU_RS16400 0.66 +2.2
3,718,839 - PFLU_RS16400 0.66 +0.3
3,718,839 - PFLU_RS16400 0.66 -0.4
3,718,839 - PFLU_RS16400 0.66 +1.2
3,718,839 - PFLU_RS16400 0.66 +1.4
3,718,839 - PFLU_RS16400 0.66 -0.7
3,718,839 - PFLU_RS16400 0.66 -0.8
3,718,867 + PFLU_RS16400 0.69 -0.0
3,718,925 + PFLU_RS16400 0.75 -1.2
3,718,925 + PFLU_RS16400 0.75 +0.2
3,718,926 - PFLU_RS16400 0.75 +0.5
3,718,926 - PFLU_RS16400 0.75 +0.2
3,718,926 - PFLU_RS16400 0.75 -0.2
3,718,926 - PFLU_RS16400 0.75 +0.3
3,718,926 - PFLU_RS16400 0.75 -2.1
3,718,928 + PFLU_RS16400 0.75 -0.2
3,718,928 + PFLU_RS16400 0.75 -0.1
3,718,928 + PFLU_RS16400 0.75 +0.4
3,718,929 - PFLU_RS16400 0.75 +0.2
3,718,929 - PFLU_RS16400 0.75 -0.5
3,719,039 + PFLU_RS16400 0.86 +0.0
3,719,040 - PFLU_RS16400 0.86 -0.3
3,719,040 - PFLU_RS16400 0.86 +1.7

Or see this region's nucleotide sequence