Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15315

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,430,704	+		PFLU_RS15305	0.72	+0.6
3,430,704	+		PFLU_RS15305	0.72	-0.8
3,430,704	+		PFLU_RS15305	0.72	+0.6
3,430,704	+		PFLU_RS15305	0.72	-0.9
3,430,705	-		PFLU_RS15305	0.72	+0.1
3,430,705	-		PFLU_RS15305	0.72	+1.5
3,430,953	+		PFLU_RS15305	0.87	-0.5
3,430,953	+		PFLU_RS15305	0.87	+0.8
3,430,953	+		PFLU_RS15305	0.87	-1.3
3,430,953	+		PFLU_RS15305	0.87	+0.4
3,430,953	+		PFLU_RS15305	0.87	-0.1
3,430,953	+		PFLU_RS15305	0.87	+0.2
3,430,953	+		PFLU_RS15305	0.87	+0.1
3,430,953	+		PFLU_RS15305	0.87	+0.2
3,430,953	+		PFLU_RS15305	0.87	-0.4
3,430,953	+		PFLU_RS15305	0.87	+0.1
3,430,953	+		PFLU_RS15305	0.87	-0.2
3,430,953	+		PFLU_RS15305	0.87	+1.1
3,430,953	+		PFLU_RS15305	0.87	-0.6
3,430,953	+		PFLU_RS15305	0.87	+0.3
3,430,953	+		PFLU_RS15305	0.87	-0.5
3,430,953	+		PFLU_RS15305	0.87	-0.5
3,430,953	+		PFLU_RS15305	0.87	+0.3
3,430,953	+		PFLU_RS15305	0.87	+0.5
3,430,953	+		PFLU_RS15305	0.87	+0.5
3,430,953	+		PFLU_RS15305	0.87	+0.9
3,430,953	+		PFLU_RS15305	0.87	+1.0
3,430,954	-		PFLU_RS15305	0.87	+0.9
3,430,954	-		PFLU_RS15305	0.87	+0.1
3,430,954	-		PFLU_RS15305	0.87	-0.1
3,430,954	-		PFLU_RS15305	0.87	-0.5
3,430,954	-		PFLU_RS15305	0.87	-0.3
3,430,954	-		PFLU_RS15305	0.87	+1.1
3,430,954	-		PFLU_RS15305	0.87	+0.6
3,430,954	-		PFLU_RS15305	0.87	-0.1
3,430,954	-		PFLU_RS15305	0.87	+0.1
3,430,954	-		PFLU_RS15305	0.87	+0.1
3,431,085	+				-0.3
3,431,085	+				+0.2
3,431,086	-				-2.3
3,431,122	+				+1.2
3,431,123	-				-1.7
3,431,123	-				-2.5
3,431,130	+				-0.3
3,431,131	-				-0.5
3,431,131	-				+0.4
3,431,133	+				+0.4
3,431,133	+				+1.2
3,431,133	+				-0.8
3,431,134	-				+0.5
3,431,134	-				-0.9
3,431,134	-				+0.5
3,431,134	-				-2.0
3,431,231	+				+0.2
3,431,231	+				+0.6
3,431,231	+				+0.1
3,431,232	-				+0.1
3,431,232	-				+0.1
3,431,232	-				+0.3
3,431,232	-				-0.6
3,431,235	+				-1.5
3,431,235	+				+0.7
3,431,235	+				+0.2
3,431,236	-				+1.0
3,431,236	-				-0.3
3,431,236	-				+0.9
3,431,236	-				+0.5
3,431,236	-				+0.4
3,431,236	-				+0.6
3,431,236	-				-0.1
3,431,236	-				+0.7
3,431,256	+				-0.5
3,431,256	+				+0.3
3,431,257	-				-0.5
3,431,257	-				-0.1
3,431,260	+				+0.8
3,431,260	+				+0.2
3,431,261	-				-1.3
3,431,261	-				+0.9
3,431,339	+				+0.9
3,431,339	+				-0.8
3,431,340	-				+1.2
3,431,340	-				-0.2
3,431,340	-				+0.3
3,431,347	-				-0.5
3,431,423	+		PFLU_RS15310	0.34	+0.0
3,431,424	-		PFLU_RS15310	0.34	-0.2
3,431,449	+		PFLU_RS15310	0.45	-1.2
3,431,449	+		PFLU_RS15310	0.45	+1.9
3,431,449	+		PFLU_RS15310	0.45	+0.1
3,431,449	+		PFLU_RS15310	0.45	-0.5
3,431,450	-		PFLU_RS15310	0.46	-0.5
3,431,450	-		PFLU_RS15310	0.46	+0.3
3,431,450	-		PFLU_RS15310	0.46	-1.3
3,431,450	-		PFLU_RS15310	0.46	-2.0
3,431,525	+		PFLU_RS15310	0.79	-0.4
3,431,589	+				+1.0
3,431,590	-				+1.1
3,431,628	-				+0.8
3,431,637	+				-3.1
3,431,637	+				-0.5
3,431,638	-				-0.0
3,431,897	+		PFLU_RS15315	0.14	+0.5
3,432,005	+		PFLU_RS15315	0.22	+1.4
3,432,005	+		PFLU_RS15315	0.22	+1.0
3,432,005	+		PFLU_RS15315	0.22	+1.5
3,432,006	-		PFLU_RS15315	0.22	-0.1
3,432,006	-		PFLU_RS15315	0.22	+0.1
3,432,118	+		PFLU_RS15315	0.30	-0.6
3,432,261	-		PFLU_RS15315	0.40	+0.1
3,432,412	+		PFLU_RS15315	0.50	+0.6
3,432,413	-		PFLU_RS15315	0.51	-0.1
3,432,427	+		PFLU_RS15315	0.52	+0.3
3,432,427	+		PFLU_RS15315	0.52	+0.1
3,432,427	+		PFLU_RS15315	0.52	-0.2
3,432,428	-		PFLU_RS15315	0.52	+0.4
3,432,491	+		PFLU_RS15315	0.56	-0.5
3,432,541	+		PFLU_RS15315	0.60	+0.7
3,432,587	-		PFLU_RS15315	0.63	+0.2
3,432,587	-		PFLU_RS15315	0.63	+1.1
3,432,587	-		PFLU_RS15315	0.63	-1.7
3,432,730	+		PFLU_RS15315	0.73	+0.6
3,432,731	-		PFLU_RS15315	0.73	+0.2
3,432,731	-		PFLU_RS15315	0.73	-0.3
3,432,731	-		PFLU_RS15315	0.73	+0.5
3,432,763	+		PFLU_RS15315	0.75	-1.4
3,432,901	-		PFLU_RS15315	0.85	+0.7
3,433,024	+				-0.2
3,433,024	+				+0.3
3,433,024	+				+0.6
3,433,024	+				+0.4
3,433,024	+				+0.4
3,433,025	-				+0.7
3,433,025	-				+0.4
3,433,025	-				-0.3
3,433,030	+				+0.9
3,433,030	+				-0.1
3,433,030	+				-0.8
3,433,030	+				-1.3
3,433,030	+				+0.7
3,433,030	+				+1.1
3,433,030	+				+0.8
3,433,030	+				+0.4
3,433,031	-				+0.2
3,433,031	-				-1.6
3,433,031	-				+0.4
3,433,031	-				-0.3
3,433,092	-				+0.7
3,433,092	-				+0.5
3,433,101	+				-1.1
3,433,101	+				+0.6
3,433,101	+				-0.1
3,433,102	-				-1.8
3,433,102	-				+0.1
3,433,102	-				-0.4
3,433,102	-				+0.1
3,433,102	-				+0.9
3,433,102	-				+1.1
3,433,103	+				-1.4
3,433,103	+				+1.3
3,433,103	+				-0.8
3,433,104	-				+0.6
3,433,123	+				+0.7
3,433,123	+				+0.4
3,433,123	+				-0.2
3,433,123	+				-0.8
3,433,124	-				+0.8
3,433,124	-				-0.4
3,433,124	-				-0.6
3,433,124	-				+0.7
3,433,124	-				-0.7
3,433,124	-				+0.4
3,433,133	+				-0.8
3,433,205	-				+0.2
3,433,205	-				-2.8
3,433,205	-				-0.3
3,433,205	-				-1.0
3,433,207	+				+0.4
3,433,208	-				+0.2
3,433,208	-				-0.4
3,433,208	-				+0.1
3,433,235	-				-0.3
3,433,274	-				-0.2
3,433,274	-				+0.4
3,433,535	-		PFLU_RS15320	0.29	-0.0
3,433,535	-		PFLU_RS15320	0.29	+0.5
3,433,535	-		PFLU_RS15320	0.29	+0.6
3,433,588	+		PFLU_RS15320	0.33	+0.9
3,433,588	+		PFLU_RS15320	0.33	+1.3
3,433,588	+		PFLU_RS15320	0.33	-0.3
3,433,588	+		PFLU_RS15320	0.33	+0.5
3,433,588	+		PFLU_RS15320	0.33	-0.2
3,433,588	+		PFLU_RS15320	0.33	-0.1
3,433,589	-		PFLU_RS15320	0.33	+0.0
3,433,589	-		PFLU_RS15320	0.33	-0.3
3,433,589	-		PFLU_RS15320	0.33	+0.0
3,433,589	-		PFLU_RS15320	0.33	+0.2
3,433,589	-		PFLU_RS15320	0.33	+0.2
3,433,630	+		PFLU_RS15320	0.36	+0.5
3,433,631	-		PFLU_RS15320	0.36	+0.2
3,433,631	-		PFLU_RS15320	0.36	+1.2
3,433,647	+		PFLU_RS15320	0.38	+0.3
3,433,648	-		PFLU_RS15320	0.38	+0.6
3,433,648	-		PFLU_RS15320	0.38	-0.0
3,433,671	+		PFLU_RS15320	0.40	-1.6
3,433,671	+		PFLU_RS15320	0.40	-0.2
3,433,671	+		PFLU_RS15320	0.40	+1.4
3,433,671	+		PFLU_RS15320	0.40	-0.1
3,433,672	-		PFLU_RS15320	0.40	-1.8
3,433,679	-		PFLU_RS15320	0.40	+0.1
3,433,756	+		PFLU_RS15320	0.46	+0.0
3,433,756	+		PFLU_RS15320	0.46	+0.6
3,433,756	+		PFLU_RS15320	0.46	-0.9
3,433,756	+		PFLU_RS15320	0.46	-0.9
3,433,757	-		PFLU_RS15320	0.46	+1.0
3,433,757	-		PFLU_RS15320	0.46	+0.3
3,433,757	-		PFLU_RS15320	0.46	+0.5
3,433,757	-		PFLU_RS15320	0.46	-0.0
3,433,831	-		PFLU_RS15320	0.52	+1.1
3,433,831	-		PFLU_RS15320	0.52	-0.6
3,433,913	-		PFLU_RS15320	0.58	+0.4
3,434,056	+		PFLU_RS15320	0.68	-0.6
3,434,056	+		PFLU_RS15320	0.68	+0.8
3,434,056	+		PFLU_RS15320	0.68	+0.3
3,434,056	+		PFLU_RS15320	0.68	-0.2
3,434,057	-		PFLU_RS15320	0.69	+0.2
3,434,057	-		PFLU_RS15320	0.69	-0.7
3,434,057	-		PFLU_RS15320	0.69	+0.3
3,434,059	+		PFLU_RS15320	0.69	+0.0
3,434,059	+		PFLU_RS15320	0.69	-0.7
3,434,059	+		PFLU_RS15320	0.69	-1.0
3,434,059	+		PFLU_RS15320	0.69	+0.1
3,434,060	-		PFLU_RS15320	0.69	-0.4
3,434,060	-		PFLU_RS15320	0.69	+0.1
3,434,060	-		PFLU_RS15320	0.69	+0.5
3,434,060	-		PFLU_RS15320	0.69	+0.2
3,434,060	-		PFLU_RS15320	0.69	+0.3
3,434,060	-		PFLU_RS15320	0.69	-0.2
3,434,060	-		PFLU_RS15320	0.69	-0.7
3,434,060	-		PFLU_RS15320	0.69	-0.7
3,434,060	-		PFLU_RS15320	0.69	+0.3