Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07305

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,625,099	+				-0.3
1,625,099	+				+0.9
1,625,131	+				-0.4
1,625,131	+				-1.2
1,625,135	+				+0.1
1,625,184	+				+0.3
1,625,184	+				+0.2
1,625,184	+				+0.4
1,625,184	+				+0.3
1,625,184	+				-0.7
1,625,185	-				+0.8
1,625,213	+				+0.4
1,625,213	+				-0.7
1,625,214	-				+0.2
1,625,214	-				-0.1
1,625,243	+				+0.2
1,625,243	+				+0.3
1,625,243	+				-0.4
1,625,243	+				+0.3
1,625,244	-				+0.0
1,625,244	-				-1.0
1,625,244	-				-0.0
1,625,244	-				+0.3
1,625,244	-				-0.3
1,625,244	-				+0.6
1,625,253	+				-1.3
1,625,253	+				+0.9
1,625,253	+				+0.9
1,625,253	+				+0.9
1,625,253	+				+0.5
1,625,253	+				-1.1
1,625,253	+				-0.2
1,625,254	-				+0.9
1,625,254	-				+0.5
1,625,254	-				-1.0
1,625,254	-				+2.1
1,625,254	-				-0.1
1,625,254	-				-0.7
1,625,271	+				+0.4
1,625,271	+				+0.9
1,625,271	+				+0.4
1,625,272	-				+1.3
1,625,272	-				+1.4
1,625,293	+				+0.1
1,625,299	-				-0.1
1,625,325	+				-0.1
1,625,325	+				+0.7
1,625,326	-				+0.6
1,625,354	+				+0.6
1,625,354	+				-0.7
1,625,354	+				-1.6
1,625,355	+				+0.6
1,625,382	+				-0.3
1,625,382	+				+0.5
1,625,382	+				+0.5
1,625,382	+				+0.6
1,625,383	-				-0.1
1,625,383	-				+0.1
1,625,383	-				+0.0
1,625,405	+				+0.5
1,625,405	+				+0.4
1,625,406	-				-0.2
1,625,406	-				-0.7
1,625,468	+		PFLU_RS30465	0.20	+0.1
1,625,468	+		PFLU_RS30465	0.20	+0.7
1,625,468	+		PFLU_RS30465	0.20	+1.4
1,625,468	+		PFLU_RS30465	0.20	+0.5
1,625,468	+		PFLU_RS30465	0.20	-1.3
1,625,469	-		PFLU_RS30465	0.20	-1.3
1,625,469	-		PFLU_RS30465	0.20	+0.9
1,625,474	-		PFLU_RS30465	0.21	+0.3
1,625,474	-		PFLU_RS30465	0.21	+0.5
1,625,485	+		PFLU_RS30465	0.23	-0.1
1,625,485	+		PFLU_RS30465	0.23	-0.0
1,625,517	+		PFLU_RS30465	0.29	+0.4
1,625,517	+		PFLU_RS30465	0.29	+0.7
1,625,518	-		PFLU_RS30465	0.30	+0.7
1,625,570	-		PFLU_RS30465	0.40	-0.1
1,625,668	+		PFLU_RS30465	0.59	+0.9
1,625,668	+		PFLU_RS30465	0.59	-0.5
1,625,668	+		PFLU_RS30465	0.59	+0.4
1,625,669	-		PFLU_RS30465	0.59	-0.6
1,625,669	-		PFLU_RS30465	0.59	+0.1
1,625,669	-		PFLU_RS30465	0.59	-0.8
1,625,672	+		PFLU_RS30465	0.60	+0.2
1,625,673	-		PFLU_RS30465	0.60	+0.4
1,625,673	-		PFLU_RS30465	0.60	-0.0
1,625,673	-		PFLU_RS30465	0.60	+0.6
1,625,673	-		PFLU_RS30465	0.60	-0.5
1,625,698	+		PFLU_RS30465	0.65	+0.4
1,625,698	+		PFLU_RS30465	0.65	-0.8
1,625,699	-		PFLU_RS30465	0.65	-0.3
1,625,699	-		PFLU_RS30465	0.65	+0.3
1,625,745	+		PFLU_RS30465	0.74	+1.3
1,625,746	-		PFLU_RS30465	0.74	-0.1
1,625,779	+		PFLU_RS30465	0.81	-0.2
1,625,779	+		PFLU_RS30465	0.81	+0.2
1,625,779	+		PFLU_RS30465	0.81	+0.1
1,625,779	+		PFLU_RS30465	0.81	-0.6
1,625,779	+		PFLU_RS30465	0.81	-0.2
1,625,779	+		PFLU_RS30465	0.81	-0.3
1,625,779	+		PFLU_RS30465	0.81	-0.2
1,625,779	+		PFLU_RS30465	0.81	+0.5
1,625,779	+		PFLU_RS30465	0.81	+0.1
1,625,779	+		PFLU_RS30465	0.81	+0.5
1,625,779	+		PFLU_RS30465	0.81	-0.5
1,625,779	+		PFLU_RS30465	0.81	-0.5
1,625,779	+		PFLU_RS30465	0.81	-0.8
1,625,779	+		PFLU_RS30465	0.81	-0.8
1,625,780	-		PFLU_RS30465	0.81	-0.5
1,625,780	-		PFLU_RS30465	0.81	-1.0
1,625,780	-		PFLU_RS30465	0.81	-0.1
1,625,780	-		PFLU_RS30465	0.81	+0.8
1,625,780	-		PFLU_RS30465	0.81	+1.2
1,625,780	-		PFLU_RS30465	0.81	+0.6
1,625,780	-		PFLU_RS30465	0.81	+0.6
1,625,780	-		PFLU_RS30465	0.81	+0.9
1,625,780	-		PFLU_RS30465	0.81	+0.2
1,625,780	-		PFLU_RS30465	0.81	-1.0
1,625,780	-		PFLU_RS30465	0.81	-0.3
1,625,780	-		PFLU_RS30465	0.81	+0.5
1,625,780	-		PFLU_RS30465	0.81	-1.9
1,625,780	-		PFLU_RS30465	0.81	-0.8
1,625,807	+		PFLU_RS30465	0.86	+0.1
1,625,807	+		PFLU_RS30465	0.86	-0.4
1,625,867	+				-0.2
1,625,867	+				+0.2
1,625,947	+				+0.6
1,625,977	+				-0.7
1,625,977	+				+0.2
1,625,977	+				-0.3
1,625,977	+				-0.0
1,625,977	+				+0.4
1,625,977	+				-0.5
1,625,977	+				-0.5
1,625,978	-				-1.6
1,625,978	-				-1.1
1,625,978	-				+0.1
1,625,978	-				+0.6
1,625,978	-				+0.4
1,626,068	+				-0.7
1,626,068	+				-0.4
1,626,068	+				-0.3
1,626,068	+				-0.2
1,626,068	+				-1.0
1,626,068	+				+0.3
1,626,068	+				+0.5
1,626,068	+				+0.2
1,626,069	-				+0.9
1,626,069	-				-0.0
1,626,069	-				-0.3
1,626,069	-				+0.2
1,626,069	-				-0.5
1,626,069	-				-0.9
1,626,069	-				-0.3
1,626,069	-				+0.4
1,626,069	-				+0.6
1,626,069	-				-1.5
1,626,069	-				+0.7
1,626,074	+				+0.4
1,626,074	+				+0.5
1,626,074	+				-1.7
1,626,094	+				-0.8
1,626,095	-				+0.7
1,626,139	+				+0.9
1,626,140	-				+0.6
1,626,151	+				-1.6
1,626,152	-				+0.9
1,626,187	+				+0.7
1,626,187	+				+0.3
1,626,187	+				+0.5
1,626,188	-				-0.2
1,626,188	-				+0.4
1,626,188	-				+0.2
1,626,188	-				-0.1
1,626,188	-				-0.3
1,626,256	-		PFLU_RS07305	0.14	-0.4
1,626,275	+		PFLU_RS07305	0.16	-1.7
1,626,276	-		PFLU_RS07305	0.16	+0.3
1,626,312	+		PFLU_RS07305	0.19	+0.8
1,626,312	+		PFLU_RS07305	0.19	+0.8
1,626,312	+		PFLU_RS07305	0.19	+0.3
1,626,312	+		PFLU_RS07305	0.19	+1.1
1,626,313	-		PFLU_RS07305	0.19	+0.9
1,626,313	-		PFLU_RS07305	0.19	-1.4
1,626,313	-		PFLU_RS07305	0.19	+0.9
1,626,314	+		PFLU_RS07305	0.19	+0.1
1,626,315	-		PFLU_RS07305	0.19	-0.0
1,626,329	+		PFLU_RS07305	0.20	+0.8
1,626,333	-		PFLU_RS07305	0.20	-0.9
1,626,427	+		PFLU_RS07305	0.28	+0.2
1,626,427	+		PFLU_RS07305	0.28	+0.2
1,626,427	+		PFLU_RS07305	0.28	+0.6
1,626,427	+		PFLU_RS07305	0.28	+0.3
1,626,428	-		PFLU_RS07305	0.28	-0.2
1,626,552	-		PFLU_RS07305	0.37	+1.1
1,626,591	+		PFLU_RS07305	0.40	+0.6
1,626,725	+		PFLU_RS07305	0.51	+1.3
1,626,726	-		PFLU_RS07305	0.51	+0.7
1,626,889	+		PFLU_RS07305	0.64	+1.0
1,626,890	-		PFLU_RS07305	0.64	+0.2
1,626,966	+		PFLU_RS07305	0.70	+1.0
1,626,966	+		PFLU_RS07305	0.70	+0.2
1,626,966	+		PFLU_RS07305	0.70	-0.1
1,626,966	+		PFLU_RS07305	0.70	-0.4
1,626,967	-		PFLU_RS07305	0.70	+0.7
1,626,967	-		PFLU_RS07305	0.70	+1.1
1,626,967	-		PFLU_RS07305	0.70	-0.4
1,626,967	-		PFLU_RS07305	0.70	+0.9
1,626,967	-		PFLU_RS07305	0.70	-1.4
1,626,967	-		PFLU_RS07305	0.70	+1.0
1,626,967	-		PFLU_RS07305	0.70	+0.2
1,627,089	+		PFLU_RS07305	0.79	+0.8
1,627,113	+		PFLU_RS07305	0.81	+0.5
1,627,113	+		PFLU_RS07305	0.81	-0.7
1,627,113	+		PFLU_RS07305	0.81	-1.2
1,627,113	+		PFLU_RS07305	0.81	-0.4
1,627,113	+		PFLU_RS07305	0.81	+0.7
1,627,113	+		PFLU_RS07305	0.81	+0.2
1,627,114	-		PFLU_RS07305	0.81	+0.1
1,627,114	-		PFLU_RS07305	0.81	-1.6
1,627,114	-		PFLU_RS07305	0.81	-0.1
1,627,114	-		PFLU_RS07305	0.81	-0.5
1,627,114	-		PFLU_RS07305	0.81	+0.2
1,627,143	+		PFLU_RS07305	0.83	+0.4
1,627,143	+		PFLU_RS07305	0.83	-0.3
1,627,144	-		PFLU_RS07305	0.83	-0.1
1,627,144	-		PFLU_RS07305	0.83	+1.0
1,627,166	+		PFLU_RS07305	0.85	-0.2
1,627,167	-		PFLU_RS07305	0.85	+0.7
1,627,167	-		PFLU_RS07305	0.85	-0.2
1,627,216	+		PFLU_RS07305	0.89	+0.6
1,627,264	+				+0.1
1,627,277	-				+0.4
1,627,280	+				-1.0
1,627,299	+				+0.8
1,627,301	+				-0.5
1,627,302	-				+0.0
1,627,356	+				-1.8
1,627,408	+				-0.0
1,627,409	-				+0.6
1,627,409	-				+1.6
1,627,409	-				+2.7
1,627,409	-				+0.2
1,627,417	+		PFLU_RS31445	0.11	-0.5
1,627,467	-		PFLU_RS31445	0.27	+0.0
1,627,471	+		PFLU_RS31445	0.28	+0.2
1,627,471	+		PFLU_RS31445	0.28	-0.1
1,627,471	+		PFLU_RS31445	0.28	+0.2
1,627,471	+		PFLU_RS31445	0.28	-0.3
1,627,471	+		PFLU_RS31445	0.28	+0.1
1,627,472	-		PFLU_RS31445	0.29	-0.3
1,627,472	-		PFLU_RS31445	0.29	-1.0
1,627,587	-		PFLU_RS31445	0.65	-0.7
1,627,593	+		PFLU_RS31445	0.67	-0.9
1,627,714	-				-1.2
1,627,717	+				+0.7
1,627,775	+				+0.5
1,627,776	-				-0.5
1,627,776	-				-0.1
1,627,776	-				-0.3
1,627,779	+				+1.0
1,627,779	+				-0.1
1,627,780	-				+0.7
1,627,791	+				-0.1
1,627,791	+				+0.2
1,627,791	+				+0.9
1,627,792	-				+0.0
1,627,792	-				-0.1
1,627,807	-				-0.1
1,627,807	-				-0.6
1,627,809	+				+0.9
1,627,810	-				+0.8
1,627,810	-				-0.1
1,627,879	-				-1.0
1,627,887	+		PFLU_RS07310	0.13	-0.0
1,627,923	+		PFLU_RS07310	0.33	+0.1
1,627,923	+		PFLU_RS07310	0.33	-0.1
1,627,923	+		PFLU_RS07310	0.33	+0.5
1,627,926	+		PFLU_RS07310	0.35	+1.6
1,627,926	+		PFLU_RS07310	0.35	-0.3
1,627,926	+		PFLU_RS07310	0.35	+0.5
1,627,926	+		PFLU_RS07310	0.35	-0.3
1,627,926	+		PFLU_RS07310	0.35	+1.1
1,627,927	-		PFLU_RS07310	0.36	-0.2
1,627,927	-		PFLU_RS07310	0.36	-0.1
1,627,946	+		PFLU_RS07310	0.46	-0.8
1,627,947	-		PFLU_RS07310	0.47	+0.7
1,627,947	-		PFLU_RS07310	0.47	-0.4
1,627,991	+		PFLU_RS07310	0.71	+0.1
1,627,992	-		PFLU_RS07310	0.72	+0.7
1,627,992	-		PFLU_RS07310	0.72	+0.6
1,628,012	+		PFLU_RS07310	0.83	-0.5
1,628,013	-		PFLU_RS07310	0.83	+1.8
1,628,018	+		PFLU_RS07310	0.86	+0.3
1,628,040	+				-3.1
1,628,041	-				-0.4
1,628,055	+				+0.3
1,628,055	+				-0.1
1,628,055	+				+0.2
1,628,055	+				-0.3
1,628,055	+				+1.3
1,628,056	-				+0.3
1,628,056	-				-0.3
1,628,056	-				-1.4
1,628,056	-				+0.1
1,628,056	-				-0.3
1,628,056	-				+0.4
1,628,056	-				+0.4
1,628,158	+				+3.0
1,628,158	+				+0.9
1,628,158	+				-0.1
1,628,159	-				+1.0
1,628,210	+				-0.9
1,628,210	+				-1.1
1,628,210	+				-0.0
1,628,210	+				+0.2
1,628,210	+				-0.5
1,628,210	+				+0.3
1,628,210	+				+0.6
1,628,210	+				+0.3
1,628,210	+				-0.0
1,628,210	+				+1.5
1,628,210	+				+0.6
1,628,211	-				-0.7
1,628,211	-				-0.4
1,628,211	-				-0.7
1,628,211	-				-0.5
1,628,211	-				-0.6
1,628,211	-				+0.7
1,628,211	-				+0.1
1,628,211	-				+0.3
1,628,213	+				-1.5
1,628,213	+				+0.3
1,628,214	-				+0.1
1,628,214	-				+0.1
1,628,312	+		PFLU_RS07315	0.10	-0.4