Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05455

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,214,449	+		PFLU_RS05445	0.42	+0.6
1,214,457	+		PFLU_RS05445	0.44	+0.2
1,214,457	+		PFLU_RS05445	0.44	-1.8
1,214,457	+		PFLU_RS05445	0.44	-0.2
1,214,458	-		PFLU_RS05445	0.44	-0.9
1,214,458	-		PFLU_RS05445	0.44	-0.6
1,214,521	+		PFLU_RS05445	0.57	+0.2
1,214,521	+		PFLU_RS05445	0.57	+0.0
1,214,601	+		PFLU_RS05445	0.74	+0.3
1,214,601	+		PFLU_RS05445	0.74	+1.1
1,214,601	+		PFLU_RS05445	0.74	-0.2
1,214,602	-		PFLU_RS05445	0.74	-0.4
1,214,720	-				-1.2
1,214,725	+				+0.6
1,214,726	-				+0.8
1,214,726	-				+0.0
1,214,738	+				-1.8
1,214,738	+				+0.5
1,214,739	-				-1.2
1,214,739	-				+0.2
1,214,739	-				-0.5
1,214,739	-				+1.0
1,214,759	+				+1.1
1,214,759	+				-0.6
1,214,759	+				-0.3
1,214,759	+				+0.5
1,214,759	+				+0.6
1,214,760	-				-1.4
1,214,788	+				+0.3
1,214,788	+				+1.1
1,214,789	-				-0.7
1,214,789	-				-0.0
1,214,918	+		PFLU_RS05450	0.33	+0.1
1,214,934	+		PFLU_RS05450	0.36	+0.4
1,214,934	+		PFLU_RS05450	0.36	+1.6
1,214,934	+		PFLU_RS05450	0.36	-0.1
1,214,934	+		PFLU_RS05450	0.36	+0.0
1,214,934	+		PFLU_RS05450	0.36	-1.1
1,214,934	+		PFLU_RS05450	0.36	-0.2
1,214,934	+		PFLU_RS05450	0.36	+0.3
1,214,934	+		PFLU_RS05450	0.36	+1.6
1,214,934	+		PFLU_RS05450	0.36	+0.5
1,214,934	+		PFLU_RS05450	0.36	+1.2
1,214,934	+		PFLU_RS05450	0.36	-0.0
1,214,935	-		PFLU_RS05450	0.36	-1.5
1,214,935	-		PFLU_RS05450	0.36	+0.3
1,214,935	-		PFLU_RS05450	0.36	-0.4
1,214,935	-		PFLU_RS05450	0.36	+0.9
1,214,935	-		PFLU_RS05450	0.36	+0.6
1,214,935	-		PFLU_RS05450	0.36	-0.1
1,214,935	-		PFLU_RS05450	0.36	-0.3
1,214,935	-		PFLU_RS05450	0.36	-0.3
1,214,935	-		PFLU_RS05450	0.36	-0.8
1,214,935	-		PFLU_RS05450	0.36	+0.6
1,214,935	-		PFLU_RS05450	0.36	-0.6
1,214,935	-		PFLU_RS05450	0.36	-1.1
1,214,935	-		PFLU_RS05450	0.36	+0.7
1,214,935	-		PFLU_RS05450	0.36	+0.6
1,214,936	+		PFLU_RS05450	0.36	+1.2
1,214,936	+		PFLU_RS05450	0.36	-1.4
1,215,077	+		PFLU_RS05450	0.62	-0.8
1,215,077	+		PFLU_RS05450	0.62	+0.2
1,215,077	+		PFLU_RS05450	0.62	-0.5
1,215,078	-		PFLU_RS05450	0.62	+0.9
1,215,078	-		PFLU_RS05450	0.62	+0.5
1,215,078	-		PFLU_RS05450	0.62	+0.4
1,215,119	+		PFLU_RS05450	0.69	-0.3
1,215,119	+		PFLU_RS05450	0.69	+1.0
1,215,137	+		PFLU_RS05450	0.72	+0.1
1,215,137	+		PFLU_RS05450	0.72	-0.0
1,215,164	+		PFLU_RS05450	0.77	+0.6
1,215,195	+		PFLU_RS05450	0.83	+0.1
1,215,196	-		PFLU_RS05450	0.83	-0.6
1,215,196	-		PFLU_RS05450	0.83	-0.2
1,215,196	-		PFLU_RS05450	0.83	+0.1
1,215,249	+				-0.2
1,215,250	-				-0.0
1,215,250	-				-0.4
1,215,250	-				+1.2
1,215,250	-				-0.3
1,215,251	+				+0.3
1,215,251	+				+0.4
1,215,251	+				+0.3
1,215,251	+				+0.9
1,215,251	+				+0.6
1,215,251	+				-0.2
1,215,251	+				+0.5
1,215,252	-				-1.5
1,215,252	-				+1.1
1,215,294	-				+0.5
1,215,294	-				-0.5
1,215,307	+				+0.0
1,215,307	+				+0.5
1,215,308	-				+1.5
1,215,308	-				+0.2
1,215,308	-				+0.9
1,215,396	+				+0.5
1,215,396	+				+0.2
1,215,396	+				-0.7
1,215,397	-				-0.8
1,215,429	+				+0.3
1,215,429	+				-0.2
1,215,429	+				+0.1
1,215,429	+				-0.2
1,215,429	+				+0.5
1,215,429	+				+0.5
1,215,429	+				+0.3
1,215,430	-				+0.4
1,215,430	-				-0.2
1,215,430	-				+0.4
1,215,430	-				+0.9
1,215,430	-				+0.6
1,215,430	-				+0.7
1,215,431	+				-0.7
1,215,431	+				-0.9
1,215,431	+				+0.2
1,215,431	+				-0.0
1,215,431	+				+0.7
1,215,432	-				+0.2
1,215,432	-				+1.1
1,215,432	-				-0.6
1,215,432	-				-0.8
1,215,463	+				+0.3
1,215,463	+				+0.0
1,215,463	+				+0.2
1,215,463	+				-0.1
1,215,464	-				+0.2
1,215,464	-				-0.6
1,215,464	-				-0.1
1,215,464	-				+0.5
1,215,464	-				-0.1
1,215,464	-				+0.2
1,215,464	-				-0.2
1,215,466	+				+0.3
1,215,466	+				+0.1
1,215,467	-				+0.3
1,215,467	-				+1.7
1,215,467	-				+0.9
1,215,517	-		PFLU_RS05455	0.10	+0.2
1,215,522	+		PFLU_RS05455	0.11	+0.2
1,215,523	-		PFLU_RS05455	0.11	-0.0
1,215,541	-		PFLU_RS05455	0.13	+0.7
1,215,541	-		PFLU_RS05455	0.13	-0.9
1,215,655	+		PFLU_RS05455	0.24	+0.4
1,215,655	+		PFLU_RS05455	0.24	+1.1
1,215,656	-		PFLU_RS05455	0.24	+1.4
1,215,656	-		PFLU_RS05455	0.24	+0.3
1,215,656	-		PFLU_RS05455	0.24	+0.3
1,215,656	-		PFLU_RS05455	0.24	+0.6
1,215,656	-		PFLU_RS05455	0.24	-0.1
1,215,662	+		PFLU_RS05455	0.25	+0.1
1,215,684	+		PFLU_RS05455	0.27	+0.5
1,215,684	+		PFLU_RS05455	0.27	+1.0
1,215,685	-		PFLU_RS05455	0.27	-0.1
1,215,735	+		PFLU_RS05455	0.33	+0.1
1,215,752	+		PFLU_RS05455	0.34	+0.2
1,215,753	-		PFLU_RS05455	0.34	-0.0
1,215,755	+		PFLU_RS05455	0.35	-0.3
1,215,755	+		PFLU_RS05455	0.35	+0.1
1,215,756	-		PFLU_RS05455	0.35	+0.4
1,215,756	-		PFLU_RS05455	0.35	+0.1
1,215,756	-		PFLU_RS05455	0.35	+0.0
1,215,756	-		PFLU_RS05455	0.35	+0.8
1,215,756	-		PFLU_RS05455	0.35	-1.5
1,215,756	-		PFLU_RS05455	0.35	+0.1
1,215,756	-		PFLU_RS05455	0.35	-0.2
1,215,756	-		PFLU_RS05455	0.35	+0.1
1,215,828	+		PFLU_RS05455	0.42	+0.2
1,215,828	+		PFLU_RS05455	0.42	-1.5
1,215,828	+		PFLU_RS05455	0.42	-1.1
1,215,828	+		PFLU_RS05455	0.42	+0.1
1,215,829	-		PFLU_RS05455	0.42	-1.1
1,215,829	-		PFLU_RS05455	0.42	-0.3
1,215,836	+		PFLU_RS05455	0.43	-1.2
1,215,836	+		PFLU_RS05455	0.43	-0.2
1,215,836	+		PFLU_RS05455	0.43	+1.7
1,215,837	-		PFLU_RS05455	0.43	-0.2
1,215,837	-		PFLU_RS05455	0.43	+0.7
1,215,837	-		PFLU_RS05455	0.43	-3.1
1,215,838	+		PFLU_RS05455	0.43	+0.8
1,215,838	+		PFLU_RS05455	0.43	+0.5
1,215,838	+		PFLU_RS05455	0.43	-0.8
1,215,838	+		PFLU_RS05455	0.43	-0.4
1,215,838	+		PFLU_RS05455	0.43	+0.0
1,215,838	+		PFLU_RS05455	0.43	-0.8
1,215,839	-		PFLU_RS05455	0.43	-0.9
1,215,839	-		PFLU_RS05455	0.43	-1.2
1,215,839	-		PFLU_RS05455	0.43	+0.1
1,215,839	-		PFLU_RS05455	0.43	-1.4
1,215,843	+		PFLU_RS05455	0.44	-0.0
1,215,843	+		PFLU_RS05455	0.44	-0.3
1,215,844	-		PFLU_RS05455	0.44	-0.5
1,215,847	-		PFLU_RS05455	0.44	-0.9
1,215,847	-		PFLU_RS05455	0.44	+0.2
1,215,926	+		PFLU_RS05455	0.52	-0.3
1,215,926	+		PFLU_RS05455	0.52	+1.4
1,215,926	+		PFLU_RS05455	0.52	-0.3
1,215,927	-		PFLU_RS05455	0.52	-0.6
1,215,927	-		PFLU_RS05455	0.52	+0.1
1,215,927	-		PFLU_RS05455	0.52	-0.0
1,215,927	-		PFLU_RS05455	0.52	-0.2
1,215,927	-		PFLU_RS05455	0.52	-0.0
1,215,927	-		PFLU_RS05455	0.52	+0.3
1,215,959	+		PFLU_RS05455	0.56	+0.0
1,215,959	+		PFLU_RS05455	0.56	-1.1
1,215,974	-		PFLU_RS05455	0.57	+0.0
1,215,974	-		PFLU_RS05455	0.57	+0.4
1,216,012	+		PFLU_RS05455	0.61	-0.3
1,216,012	+		PFLU_RS05455	0.61	-1.4
1,216,012	+		PFLU_RS05455	0.61	-1.3
1,216,013	-		PFLU_RS05455	0.61	+0.8
1,216,013	-		PFLU_RS05455	0.61	+0.1
1,216,013	-		PFLU_RS05455	0.61	+0.5
1,216,013	-		PFLU_RS05455	0.61	+1.2
1,216,044	+		PFLU_RS05455	0.64	-0.1
1,216,044	+		PFLU_RS05455	0.64	+0.1
1,216,044	+		PFLU_RS05455	0.64	-0.1
1,216,044	+		PFLU_RS05455	0.64	+0.9
1,216,044	+		PFLU_RS05455	0.64	+0.1
1,216,044	+		PFLU_RS05455	0.64	+0.0
1,216,045	-		PFLU_RS05455	0.64	+0.4
1,216,045	-		PFLU_RS05455	0.64	-0.1
1,216,045	-		PFLU_RS05455	0.64	-0.7
1,216,045	-		PFLU_RS05455	0.64	+0.0
1,216,045	-		PFLU_RS05455	0.64	+0.6
1,216,045	-		PFLU_RS05455	0.64	-0.7
1,216,109	+		PFLU_RS05455	0.71	+0.4
1,216,109	+		PFLU_RS05455	0.71	-0.5
1,216,109	+		PFLU_RS05455	0.71	+0.5
1,216,109	+		PFLU_RS05455	0.71	+0.5
1,216,109	+		PFLU_RS05455	0.71	-0.7
1,216,109	+		PFLU_RS05455	0.71	-0.2
1,216,109	+		PFLU_RS05455	0.71	-0.7
1,216,110	-		PFLU_RS05455	0.71	+0.8
1,216,110	-		PFLU_RS05455	0.71	-0.9
1,216,110	-		PFLU_RS05455	0.71	+0.1
1,216,110	-		PFLU_RS05455	0.71	-0.4
1,216,110	-		PFLU_RS05455	0.71	-1.0
1,216,110	-		PFLU_RS05455	0.71	+0.7
1,216,132	+		PFLU_RS05455	0.73	-1.0
1,216,133	-		PFLU_RS05455	0.73	+0.3
1,216,154	+		PFLU_RS05455	0.76	-1.3
1,216,154	+		PFLU_RS05455	0.76	+0.4
1,216,154	+		PFLU_RS05455	0.76	-1.2
1,216,154	+		PFLU_RS05455	0.76	-0.3
1,216,154	+		PFLU_RS05455	0.76	-0.3
1,216,154	+		PFLU_RS05455	0.76	+0.8
1,216,154	+		PFLU_RS05455	0.76	-0.0
1,216,154	+		PFLU_RS05455	0.76	+0.4
1,216,154	+		PFLU_RS05455	0.76	-0.1
1,216,154	+		PFLU_RS05455	0.76	-0.4
1,216,154	+		PFLU_RS05455	0.76	+0.4
1,216,154	+		PFLU_RS05455	0.76	-0.6
1,216,154	+		PFLU_RS05455	0.76	-0.4
1,216,155	-		PFLU_RS05455	0.76	+0.6
1,216,155	-		PFLU_RS05455	0.76	+0.5
1,216,155	-		PFLU_RS05455	0.76	-0.6
1,216,155	-		PFLU_RS05455	0.76	-0.0
1,216,155	-		PFLU_RS05455	0.76	-0.0
1,216,155	-		PFLU_RS05455	0.76	+1.2
1,216,155	-		PFLU_RS05455	0.76	+0.6
1,216,155	-		PFLU_RS05455	0.76	-0.3
1,216,388	+				-0.1
1,216,409	+				+0.8
1,216,468	+				-0.7
1,216,468	+				-1.8
1,216,469	-				-0.3
1,216,469	-				-0.6
1,216,537	+				-0.1
1,216,538	-				-0.2
1,216,538	-				-0.4
1,216,558	+		PFLU_RS30225	0.10	-0.5
1,216,558	+		PFLU_RS30225	0.10	+0.1
1,216,558	+		PFLU_RS30225	0.10	+0.1
1,216,558	+		PFLU_RS30225	0.10	-0.2
1,216,558	+		PFLU_RS30225	0.10	+0.8
1,216,558	+		PFLU_RS30225	0.10	-0.3
1,216,558	+		PFLU_RS30225	0.10	-0.2
1,216,558	+		PFLU_RS30225	0.10	-0.4
1,216,558	+		PFLU_RS30225	0.10	-0.2
1,216,559	-		PFLU_RS30225	0.10	+0.5
1,216,559	-		PFLU_RS30225	0.10	-0.4
1,216,559	-		PFLU_RS30225	0.10	+0.4
1,216,559	-		PFLU_RS30225	0.10	-0.6
1,216,559	-		PFLU_RS30225	0.10	+0.7
1,216,559	-		PFLU_RS30225	0.10	+0.6
1,216,559	-		PFLU_RS30225	0.10	+0.0
1,216,559	-		PFLU_RS30225	0.10	-0.7
1,216,559	-		PFLU_RS30225	0.10	-0.2
1,216,559	-		PFLU_RS30225	0.10	-0.5
1,216,559	-		PFLU_RS30225	0.10	-0.7
1,216,559	-		PFLU_RS30225	0.10	+0.6
1,216,561	+		PFLU_RS30225	0.11	+0.0
1,216,562	-		PFLU_RS30225	0.11	+0.9
1,216,573	+		PFLU_RS30225	0.12	+0.2
1,216,573	+		PFLU_RS30225	0.12	+1.0
1,216,573	+		PFLU_RS30225	0.12	-0.3
1,216,574	-		PFLU_RS30225	0.12	+0.2
1,216,574	-		PFLU_RS30225	0.12	-0.7
1,216,579	+		PFLU_RS30225	0.13	+0.4
1,216,580	-		PFLU_RS30225	0.13	+0.7
1,216,580	-		PFLU_RS30225	0.13	+0.6
1,216,653	-		PFLU_RS30225	0.20	-0.6
1,216,695	+		PFLU_RS30225	0.25	+0.9
1,216,695	+		PFLU_RS30225	0.25	-0.9
1,216,695	+		PFLU_RS30225	0.25	+0.4
1,216,696	-		PFLU_RS30225	0.25	+0.2
1,216,696	-		PFLU_RS30225	0.25	+0.1
1,216,696	-		PFLU_RS30225	0.25	+0.1
1,216,696	-		PFLU_RS30225	0.25	-0.1
1,216,774	+		PFLU_RS30225	0.33	+0.2
1,216,775	-		PFLU_RS30225	0.33	+0.2
1,216,814	-		PFLU_RS30225	0.37	+0.7
1,216,814	-		PFLU_RS30225	0.37	-0.2
1,216,841	+		PFLU_RS30225	0.40	-0.2
1,216,842	-		PFLU_RS30225	0.40	+0.2
1,216,843	+		PFLU_RS30225	0.40	-0.2
1,216,843	+		PFLU_RS30225	0.40	+0.6
1,216,844	-		PFLU_RS30225	0.40	+0.4
1,216,844	-		PFLU_RS30225	0.40	+0.6
1,216,844	-		PFLU_RS30225	0.40	-0.2
1,216,844	-		PFLU_RS30225	0.40	-0.7
1,216,869	+		PFLU_RS30225	0.43	+0.6
1,216,869	+		PFLU_RS30225	0.43	+1.6
1,216,870	-		PFLU_RS30225	0.43	-0.6
1,216,870	-		PFLU_RS30225	0.43	-0.4
1,216,871	+		PFLU_RS30225	0.43	+0.7
1,216,871	+		PFLU_RS30225	0.43	+0.9
1,216,871	+		PFLU_RS30225	0.43	+0.9
1,216,872	-		PFLU_RS30225	0.43	+0.5
1,216,884	-		PFLU_RS30225	0.44	-0.2
1,216,992	+		PFLU_RS30225	0.55	-0.6
1,216,992	+		PFLU_RS30225	0.55	+0.9
1,216,992	+		PFLU_RS30225	0.55	+0.3
1,216,992	+		PFLU_RS30225	0.55	+0.8
1,216,993	-		PFLU_RS30225	0.55	-0.6
1,216,993	-		PFLU_RS30225	0.55	-0.3
1,217,045	+		PFLU_RS30225	0.61	+1.2
1,217,045	+		PFLU_RS30225	0.61	+0.4
1,217,045	+		PFLU_RS30225	0.61	-0.0
1,217,045	+		PFLU_RS30225	0.61	+0.8
1,217,046	-		PFLU_RS30225	0.61	-0.1
1,217,046	-		PFLU_RS30225	0.61	-0.9
1,217,057	-		PFLU_RS30225	0.62	+0.1
1,217,092	+		PFLU_RS30225	0.66	+1.9
1,217,093	-		PFLU_RS30225	0.66	-0.2
1,217,093	-		PFLU_RS30225	0.66	+0.5
1,217,142	+		PFLU_RS30225	0.71	+0.3
1,217,142	+		PFLU_RS30225	0.71	+0.5
1,217,142	+		PFLU_RS30225	0.71	+0.6
1,217,142	+		PFLU_RS30225	0.71	-0.3
1,217,142	+		PFLU_RS30225	0.71	+0.7
1,217,143	-		PFLU_RS30225	0.71	+0.4
1,217,143	-		PFLU_RS30225	0.71	+1.8
1,217,143	-		PFLU_RS30225	0.71	+0.2
1,217,165	+		PFLU_RS30225	0.73	+0.5
1,217,165	+		PFLU_RS30225	0.73	+0.8
1,217,166	-		PFLU_RS30225	0.73	+0.8
1,217,166	-		PFLU_RS30225	0.73	-0.7
1,217,183	+		PFLU_RS30225	0.75	+1.8
1,217,183	+		PFLU_RS30225	0.75	+0.1
1,217,183	+		PFLU_RS30225	0.75	+1.3
1,217,183	+		PFLU_RS30225	0.75	-1.3
1,217,184	-		PFLU_RS30225	0.75	-0.6
1,217,184	-		PFLU_RS30225	0.75	+0.6
1,217,184	-		PFLU_RS30225	0.75	+0.1
1,217,187	+		PFLU_RS30225	0.75	+0.8
1,217,187	+		PFLU_RS30225	0.75	-0.1
1,217,187	+		PFLU_RS30225	0.75	+0.7
1,217,187	+		PFLU_RS30225	0.75	-0.3
1,217,187	+		PFLU_RS30225	0.75	+0.4
1,217,188	-		PFLU_RS30225	0.76	-0.1
1,217,188	-		PFLU_RS30225	0.76	-0.5
1,217,188	-		PFLU_RS30225	0.76	-1.5
1,217,188	-		PFLU_RS30225	0.76	+1.1
1,217,188	-		PFLU_RS30225	0.76	+0.7
1,217,188	-		PFLU_RS30225	0.76	+0.2
1,217,188	-		PFLU_RS30225	0.76	+0.3
1,217,195	+		PFLU_RS30225	0.76	-0.6
1,217,195	+		PFLU_RS30225	0.76	-0.3
1,217,196	-		PFLU_RS30225	0.76	+0.5
1,217,245	+		PFLU_RS30225	0.81	-0.1
1,217,245	+		PFLU_RS30225	0.81	+0.6
1,217,245	+		PFLU_RS30225	0.81	-0.2
1,217,245	+		PFLU_RS30225	0.81	-1.7
1,217,245	+		PFLU_RS30225	0.81	+0.4
1,217,246	-		PFLU_RS30225	0.82	-1.1
1,217,246	-		PFLU_RS30225	0.82	-0.5
1,217,246	-		PFLU_RS30225	0.82	+1.2