Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03140

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS03135 and PFLU_RS03140 overlap by 4 nucleotidesPFLU_RS03140 and PFLU_RS03145 are separated by 72 nucleotidesPFLU_RS03145 and PFLU_RS03150 are separated by 126 nucleotides PFLU_RS03135: PFLU_RS03135 - PAS domain-containing sensor histidine kinase, at 726,452 to 729,190 _RS03135 PFLU_RS03140: PFLU_RS03140 - pilus assembly protein, at 729,187 to 729,630 _RS03140 PFLU_RS03145: PFLU_RS03145 - peptidase A24, at 729,703 to 730,152 _RS03145 PFLU_RS03150: PFLU_RS03150 - response regulator transcription factor, at 730,279 to 731,067 _RS03150 Position (kb) 729 730Strain fitness (log2 ratio) -2 -1 0 1at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.213 kb on + strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.214 kb on - strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.409 kb on + strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.410 kb on - strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.616 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.625 kb on + strand, within PFLU_RS03135at 728.626 kb on - strand, within PFLU_RS03135at 728.626 kb on - strand, within PFLU_RS03135at 728.626 kb on - strand, within PFLU_RS03135at 729.064 kb on + strandat 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.278 kb on + strand, within PFLU_RS03140at 729.296 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.329 kb on + strand, within PFLU_RS03140at 729.330 kb on - strand, within PFLU_RS03140at 729.426 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.431 kb on + strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.432 kb on - strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.528 kb on + strand, within PFLU_RS03140at 729.529 kb on - strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.530 kb on + strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.531 kb on - strand, within PFLU_RS03140at 729.545 kb on + strand, within PFLU_RS03140at 729.545 kb on + strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.546 kb on - strand, within PFLU_RS03140at 729.586 kb on + strandat 729.652 kb on + strandat 729.652 kb on + strandat 729.653 kb on - strandat 729.655 kb on + strandat 729.655 kb on + strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.656 kb on - strandat 729.663 kb on - strandat 729.670 kb on + strandat 729.670 kb on + strandat 729.671 kb on - strandat 729.671 kb on - strandat 729.700 kb on + strandat 729.723 kb on - strandat 729.817 kb on + strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.818 kb on - strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.837 kb on + strand, within PFLU_RS03145at 729.838 kb on - strand, within PFLU_RS03145at 730.112 kb on + strandat 730.113 kb on - strandat 730.113 kb on - strandat 730.113 kb on - strandat 730.132 kb on + strandat 730.133 kb on - strandat 730.167 kb on + strandat 730.167 kb on + strandat 730.168 kb on - strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.177 kb on + strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.178 kb on - strandat 730.192 kb on + strandat 730.192 kb on + strandat 730.193 kb on - strandat 730.193 kb on - strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.198 kb on + strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.199 kb on - strandat 730.204 kb on + strandat 730.219 kb on + strandat 730.219 kb on + strandat 730.220 kb on - strandat 730.289 kb on + strandat 730.290 kb on - strandat 730.603 kb on + strand, within PFLU_RS03150at 730.603 kb on + strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.604 kb on - strand, within PFLU_RS03150at 730.606 kb on + strand, within PFLU_RS03150at 730.607 kb on - strand, within PFLU_RS03150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
728,213 + PFLU_RS03135 0.64 -0.5
728,213 + PFLU_RS03135 0.64 -0.1
728,213 + PFLU_RS03135 0.64 +0.3
728,213 + PFLU_RS03135 0.64 -0.8
728,213 + PFLU_RS03135 0.64 -0.1
728,214 - PFLU_RS03135 0.64 -0.1
728,214 - PFLU_RS03135 0.64 -0.8
728,214 - PFLU_RS03135 0.64 +0.1
728,409 + PFLU_RS03135 0.71 -1.0
728,409 + PFLU_RS03135 0.71 +0.8
728,409 + PFLU_RS03135 0.71 -1.5
728,410 - PFLU_RS03135 0.71 -1.3
728,410 - PFLU_RS03135 0.71 -0.5
728,616 + PFLU_RS03135 0.79 -0.4
728,616 + PFLU_RS03135 0.79 +1.0
728,616 + PFLU_RS03135 0.79 +0.5
728,616 + PFLU_RS03135 0.79 -0.4
728,616 + PFLU_RS03135 0.79 +0.6
728,625 + PFLU_RS03135 0.79 +0.7
728,625 + PFLU_RS03135 0.79 +0.4
728,625 + PFLU_RS03135 0.79 -1.3
728,626 - PFLU_RS03135 0.79 +0.2
728,626 - PFLU_RS03135 0.79 -0.0
728,626 - PFLU_RS03135 0.79 +0.7
729,064 + -0.5
729,278 + PFLU_RS03140 0.20 +0.0
729,278 + PFLU_RS03140 0.20 -0.7
729,278 + PFLU_RS03140 0.20 +0.6
729,278 + PFLU_RS03140 0.20 -0.8
729,296 + PFLU_RS03140 0.25 +0.3
729,329 + PFLU_RS03140 0.32 +0.4
729,329 + PFLU_RS03140 0.32 +0.3
729,329 + PFLU_RS03140 0.32 -0.2
729,330 - PFLU_RS03140 0.32 +0.5
729,426 + PFLU_RS03140 0.54 +0.0
729,431 + PFLU_RS03140 0.55 -2.3
729,431 + PFLU_RS03140 0.55 +0.3
729,431 + PFLU_RS03140 0.55 +0.0
729,431 + PFLU_RS03140 0.55 -0.1
729,431 + PFLU_RS03140 0.55 -0.2
729,431 + PFLU_RS03140 0.55 +1.2
729,431 + PFLU_RS03140 0.55 +0.4
729,431 + PFLU_RS03140 0.55 -0.4
729,432 - PFLU_RS03140 0.55 -0.6
729,432 - PFLU_RS03140 0.55 +0.3
729,432 - PFLU_RS03140 0.55 -0.8
729,432 - PFLU_RS03140 0.55 +0.3
729,432 - PFLU_RS03140 0.55 -0.6
729,528 + PFLU_RS03140 0.77 -0.3
729,528 + PFLU_RS03140 0.77 +0.8
729,528 + PFLU_RS03140 0.77 +1.3
729,529 - PFLU_RS03140 0.77 +0.6
729,530 + PFLU_RS03140 0.77 -1.3
729,530 + PFLU_RS03140 0.77 +0.3
729,530 + PFLU_RS03140 0.77 -0.5
729,530 + PFLU_RS03140 0.77 -0.2
729,530 + PFLU_RS03140 0.77 +0.6
729,530 + PFLU_RS03140 0.77 -0.4
729,530 + PFLU_RS03140 0.77 +0.3
729,530 + PFLU_RS03140 0.77 -0.1
729,531 - PFLU_RS03140 0.77 -2.4
729,531 - PFLU_RS03140 0.77 -0.8
729,531 - PFLU_RS03140 0.77 +0.9
729,531 - PFLU_RS03140 0.77 -0.0
729,531 - PFLU_RS03140 0.77 -0.6
729,531 - PFLU_RS03140 0.77 +0.4
729,531 - PFLU_RS03140 0.77 -1.0
729,531 - PFLU_RS03140 0.77 -1.9
729,531 - PFLU_RS03140 0.77 +0.5
729,531 - PFLU_RS03140 0.77 -1.7
729,531 - PFLU_RS03140 0.77 +0.3
729,545 + PFLU_RS03140 0.81 -2.3
729,545 + PFLU_RS03140 0.81 +1.0
729,546 - PFLU_RS03140 0.81 -0.2
729,546 - PFLU_RS03140 0.81 -1.0
729,586 + -0.3
729,652 + -0.6
729,652 + +0.9
729,653 - +0.0
729,655 + -0.6
729,655 + +0.4
729,656 - -0.8
729,656 - -1.6
729,656 - -0.1
729,656 - +0.9
729,663 - +0.3
729,670 + +0.6
729,670 + +0.1
729,671 - +0.5
729,671 - +0.6
729,700 + +0.3
729,723 - -0.1
729,817 + PFLU_RS03145 0.25 +0.2
729,818 - PFLU_RS03145 0.26 -1.5
729,818 - PFLU_RS03145 0.26 -1.6
729,837 + PFLU_RS03145 0.30 +0.4
729,837 + PFLU_RS03145 0.30 -0.1
729,838 - PFLU_RS03145 0.30 +0.7
730,112 + -0.9
730,113 - -0.8
730,113 - +0.6
730,113 - -0.8
730,132 + -0.8
730,133 - -0.0
730,167 + +1.0
730,167 + -1.3
730,168 - +0.0
730,177 + -0.0
730,177 + +0.4
730,177 + -0.4
730,177 + -0.1
730,177 + -0.3
730,177 + +0.1
730,177 + -0.6
730,177 + -0.1
730,178 - -0.2
730,178 - -0.2
730,178 - +0.5
730,178 - -0.3
730,192 + -0.0
730,192 + +0.3
730,193 - +0.4
730,193 - -0.4
730,198 + -1.7
730,198 + +0.6
730,198 + +0.4
730,198 + +0.1
730,199 - +0.6
730,199 - +0.6
730,199 - -0.4
730,199 - -0.0
730,199 - +0.2
730,204 + +0.5
730,219 + -0.3
730,219 + -1.0
730,220 - -0.6
730,289 + +0.2
730,290 - +0.2
730,603 + PFLU_RS03150 0.41 +0.3
730,603 + PFLU_RS03150 0.41 -0.8
730,604 - PFLU_RS03150 0.41 -0.2
730,604 - PFLU_RS03150 0.41 -0.6
730,606 + PFLU_RS03150 0.41 -0.3
730,607 - PFLU_RS03150 0.42 +1.0

Or see this region's nucleotide sequence