Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02330

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02320 and PFLU_RS02325 overlap by 1 nucleotidesPFLU_RS02325 and PFLU_RS02330 are separated by 61 nucleotidesPFLU_RS02330 and PFLU_RS02335 are separated by 6 nucleotides PFLU_RS02320: PFLU_RS02320 - sugar ABC transporter substrate-binding protein, at 530,588 to 531,568 _RS02320 PFLU_RS02325: PFLU_RS02325 - ATP-binding cassette domain-containing protein, at 531,568 to 531,816 _RS02325 PFLU_RS02330: PFLU_RS02330 - ABC transporter permease, at 531,878 to 532,804 _RS02330 PFLU_RS02335: PFLU_RS02335 - hypothetical protein, at 532,811 to 534,199 _RS02335 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.978 kb on + strand, within PFLU_RS02320at 530.979 kb on - strand, within PFLU_RS02320at 530.979 kb on - strand, within PFLU_RS02320at 531.089 kb on + strand, within PFLU_RS02320at 531.089 kb on + strand, within PFLU_RS02320at 531.089 kb on + strand, within PFLU_RS02320at 531.090 kb on - strand, within PFLU_RS02320at 531.090 kb on - strand, within PFLU_RS02320at 531.090 kb on - strand, within PFLU_RS02320at 531.090 kb on - strand, within PFLU_RS02320at 531.212 kb on + strand, within PFLU_RS02320at 531.213 kb on - strand, within PFLU_RS02320at 531.344 kb on + strand, within PFLU_RS02320at 531.344 kb on + strand, within PFLU_RS02320at 531.344 kb on + strand, within PFLU_RS02320at 531.344 kb on + strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.345 kb on - strand, within PFLU_RS02320at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.787 kb on + strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.788 kb on - strand, within PFLU_RS02325at 531.800 kb on - strandat 531.800 kb on - strandat 532.040 kb on + strand, within PFLU_RS02330at 532.040 kb on + strand, within PFLU_RS02330at 532.041 kb on - strand, within PFLU_RS02330at 532.041 kb on - strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.301 kb on + strand, within PFLU_RS02330at 532.302 kb on + strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.302 kb on - strand, within PFLU_RS02330at 532.304 kb on - strand, within PFLU_RS02330at 532.376 kb on + strand, within PFLU_RS02330at 532.376 kb on + strand, within PFLU_RS02330at 532.377 kb on - strand, within PFLU_RS02330at 532.377 kb on - strand, within PFLU_RS02330at 532.429 kb on + strand, within PFLU_RS02330at 532.429 kb on + strand, within PFLU_RS02330at 532.430 kb on - strand, within PFLU_RS02330at 532.430 kb on - strand, within PFLU_RS02330at 532.430 kb on - strand, within PFLU_RS02330at 532.448 kb on + strand, within PFLU_RS02330at 532.448 kb on + strand, within PFLU_RS02330at 532.451 kb on + strand, within PFLU_RS02330at 532.451 kb on + strand, within PFLU_RS02330at 532.452 kb on - strand, within PFLU_RS02330at 532.474 kb on + strand, within PFLU_RS02330at 532.553 kb on + strand, within PFLU_RS02330at 532.553 kb on + strand, within PFLU_RS02330at 532.553 kb on + strand, within PFLU_RS02330at 532.553 kb on + strand, within PFLU_RS02330at 532.554 kb on - strand, within PFLU_RS02330at 532.554 kb on - strand, within PFLU_RS02330at 532.554 kb on - strand, within PFLU_RS02330at 532.554 kb on - strand, within PFLU_RS02330at 532.642 kb on + strand, within PFLU_RS02330at 532.680 kb on + strand, within PFLU_RS02330at 532.680 kb on + strand, within PFLU_RS02330at 532.680 kb on + strand, within PFLU_RS02330at 532.681 kb on - strand, within PFLU_RS02330at 532.681 kb on - strand, within PFLU_RS02330at 532.681 kb on - strand, within PFLU_RS02330at 532.812 kb on + strandat 532.813 kb on - strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.845 kb on + strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.846 kb on - strandat 532.899 kb on + strandat 532.899 kb on + strandat 532.899 kb on + strandat 532.899 kb on + strandat 532.899 kb on + strandat 532.900 kb on - strandat 532.900 kb on - strandat 532.900 kb on - strandat 532.900 kb on - strandat 532.900 kb on - strandat 532.900 kb on - strandat 532.923 kb on + strandat 532.923 kb on + strandat 532.924 kb on - strandat 532.924 kb on - strandat 532.927 kb on + strandat 532.927 kb on + strandat 532.927 kb on + strandat 532.928 kb on - strandat 532.928 kb on - strandat 533.009 kb on + strand, within PFLU_RS02335at 533.009 kb on + strand, within PFLU_RS02335at 533.010 kb on - strand, within PFLU_RS02335at 533.616 kb on + strand, within PFLU_RS02335at 533.616 kb on + strand, within PFLU_RS02335at 533.617 kb on - strand, within PFLU_RS02335at 533.664 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.683 kb on + strand, within PFLU_RS02335at 533.684 kb on - strand, within PFLU_RS02335at 533.684 kb on - strand, within PFLU_RS02335at 533.684 kb on - strand, within PFLU_RS02335at 533.709 kb on + strand, within PFLU_RS02335at 533.709 kb on + strand, within PFLU_RS02335

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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530,978 + PFLU_RS02320 0.40 +0.2
530,979 - PFLU_RS02320 0.40 +1.6
530,979 - PFLU_RS02320 0.40 +0.0
531,089 + PFLU_RS02320 0.51 -0.5
531,089 + PFLU_RS02320 0.51 +0.7
531,089 + PFLU_RS02320 0.51 +0.0
531,090 - PFLU_RS02320 0.51 +0.1
531,090 - PFLU_RS02320 0.51 -0.1
531,090 - PFLU_RS02320 0.51 -0.4
531,090 - PFLU_RS02320 0.51 -0.6
531,212 + PFLU_RS02320 0.64 -0.3
531,213 - PFLU_RS02320 0.64 +0.7
531,344 + PFLU_RS02320 0.77 +0.2
531,344 + PFLU_RS02320 0.77 +0.2
531,344 + PFLU_RS02320 0.77 +0.5
531,344 + PFLU_RS02320 0.77 +0.9
531,345 - PFLU_RS02320 0.77 -0.2
531,345 - PFLU_RS02320 0.77 +0.4
531,345 - PFLU_RS02320 0.77 -0.8
531,345 - PFLU_RS02320 0.77 +0.3
531,345 - PFLU_RS02320 0.77 +0.5
531,345 - PFLU_RS02320 0.77 -1.2
531,787 + PFLU_RS02325 0.88 -0.6
531,787 + PFLU_RS02325 0.88 -2.7
531,787 + PFLU_RS02325 0.88 +0.6
531,787 + PFLU_RS02325 0.88 -0.6
531,787 + PFLU_RS02325 0.88 +0.7
531,787 + PFLU_RS02325 0.88 -0.4
531,787 + PFLU_RS02325 0.88 +0.0
531,787 + PFLU_RS02325 0.88 -0.1
531,787 + PFLU_RS02325 0.88 -1.6
531,788 - PFLU_RS02325 0.88 +0.5
531,788 - PFLU_RS02325 0.88 -0.6
531,788 - PFLU_RS02325 0.88 -0.3
531,788 - PFLU_RS02325 0.88 -0.8
531,788 - PFLU_RS02325 0.88 +0.3
531,788 - PFLU_RS02325 0.88 -1.6
531,800 - -1.3
531,800 - +0.1
532,040 + PFLU_RS02330 0.17 -0.1
532,040 + PFLU_RS02330 0.17 -0.0
532,041 - PFLU_RS02330 0.18 -0.6
532,041 - PFLU_RS02330 0.18 -0.6
532,301 + PFLU_RS02330 0.46 -0.9
532,301 + PFLU_RS02330 0.46 +0.1
532,301 + PFLU_RS02330 0.46 +1.0
532,301 + PFLU_RS02330 0.46 +0.8
532,301 + PFLU_RS02330 0.46 -1.2
532,301 + PFLU_RS02330 0.46 +1.0
532,301 + PFLU_RS02330 0.46 +0.1
532,301 + PFLU_RS02330 0.46 +0.2
532,301 + PFLU_RS02330 0.46 +0.2
532,301 + PFLU_RS02330 0.46 -0.5
532,302 + PFLU_RS02330 0.46 +1.1
532,302 - PFLU_RS02330 0.46 -0.5
532,302 - PFLU_RS02330 0.46 +0.4
532,302 - PFLU_RS02330 0.46 +0.5
532,302 - PFLU_RS02330 0.46 +0.5
532,302 - PFLU_RS02330 0.46 +0.1
532,302 - PFLU_RS02330 0.46 -0.2
532,302 - PFLU_RS02330 0.46 -0.4
532,302 - PFLU_RS02330 0.46 -3.0
532,302 - PFLU_RS02330 0.46 -0.3
532,302 - PFLU_RS02330 0.46 +1.1
532,302 - PFLU_RS02330 0.46 +0.0
532,302 - PFLU_RS02330 0.46 -0.1
532,302 - PFLU_RS02330 0.46 +2.2
532,302 - PFLU_RS02330 0.46 -0.1
532,302 - PFLU_RS02330 0.46 +0.8
532,302 - PFLU_RS02330 0.46 +0.7
532,302 - PFLU_RS02330 0.46 -0.3
532,302 - PFLU_RS02330 0.46 +0.2
532,302 - PFLU_RS02330 0.46 +0.7
532,304 - PFLU_RS02330 0.46 +2.1
532,376 + PFLU_RS02330 0.54 +0.6
532,376 + PFLU_RS02330 0.54 +0.3
532,377 - PFLU_RS02330 0.54 +0.3
532,377 - PFLU_RS02330 0.54 -0.9
532,429 + PFLU_RS02330 0.59 -0.7
532,429 + PFLU_RS02330 0.59 -0.9
532,430 - PFLU_RS02330 0.60 -0.6
532,430 - PFLU_RS02330 0.60 +0.1
532,430 - PFLU_RS02330 0.60 +0.4
532,448 + PFLU_RS02330 0.61 -0.7
532,448 + PFLU_RS02330 0.61 +0.1
532,451 + PFLU_RS02330 0.62 -0.0
532,451 + PFLU_RS02330 0.62 +1.2
532,452 - PFLU_RS02330 0.62 -0.4
532,474 + PFLU_RS02330 0.64 +0.9
532,553 + PFLU_RS02330 0.73 -0.0
532,553 + PFLU_RS02330 0.73 +0.2
532,553 + PFLU_RS02330 0.73 -0.2
532,553 + PFLU_RS02330 0.73 -0.3
532,554 - PFLU_RS02330 0.73 -0.8
532,554 - PFLU_RS02330 0.73 +0.1
532,554 - PFLU_RS02330 0.73 +0.9
532,554 - PFLU_RS02330 0.73 +0.3
532,642 + PFLU_RS02330 0.82 -0.7
532,680 + PFLU_RS02330 0.87 -0.2
532,680 + PFLU_RS02330 0.87 +0.4
532,680 + PFLU_RS02330 0.87 +0.3
532,681 - PFLU_RS02330 0.87 +0.6
532,681 - PFLU_RS02330 0.87 +0.2
532,681 - PFLU_RS02330 0.87 +0.3
532,812 + -0.7
532,813 - +0.1
532,845 + +0.3
532,845 + -1.6
532,845 + -0.1
532,845 + +0.6
532,845 + -1.0
532,845 + +0.6
532,845 + +0.1
532,845 + +0.5
532,846 - -0.0
532,846 - +0.6
532,846 - -1.5
532,846 - -0.6
532,846 - -0.5
532,846 - -1.1
532,846 - -0.2
532,846 - -0.1
532,899 + -0.2
532,899 + +0.4
532,899 + +0.1
532,899 + -2.0
532,899 + +0.3
532,900 - -0.2
532,900 - +1.6
532,900 - +0.1
532,900 - -0.4
532,900 - +0.6
532,900 - +0.8
532,923 + +0.2
532,923 + +0.2
532,924 - +0.4
532,924 - -0.6
532,927 + +0.2
532,927 + -0.1
532,927 + +0.6
532,928 - +0.7
532,928 - +0.2
533,009 + PFLU_RS02335 0.14 -0.6
533,009 + PFLU_RS02335 0.14 +0.5
533,010 - PFLU_RS02335 0.14 +0.2
533,616 + PFLU_RS02335 0.58 +1.2
533,616 + PFLU_RS02335 0.58 +0.8
533,617 - PFLU_RS02335 0.58 -1.5
533,664 + PFLU_RS02335 0.61 -1.4
533,683 + PFLU_RS02335 0.63 -0.5
533,683 + PFLU_RS02335 0.63 -1.7
533,683 + PFLU_RS02335 0.63 +0.6
533,683 + PFLU_RS02335 0.63 +0.2
533,683 + PFLU_RS02335 0.63 -0.3
533,683 + PFLU_RS02335 0.63 -0.1
533,684 - PFLU_RS02335 0.63 -0.4
533,684 - PFLU_RS02335 0.63 +0.2
533,684 - PFLU_RS02335 0.63 +0.1
533,709 + PFLU_RS02335 0.65 -0.0
533,709 + PFLU_RS02335 0.65 -0.4

Or see this region's nucleotide sequence