Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpxA and cpxR overlap by 4 nucleotides cpxR and cpxP are separated by 149 nucleotides cpxP and fieF are separated by 148 nucleotides
b3911: cpxA - two-component sensor protein (NCBI), at 4,101,625 to 4,102,998
cpxA
b3912: cpxR - DNA-binding response regulator in two-component regulatory system with CpxA (NCBI), at 4,102,995 to 4,103,693
cpxR
b4484: cpxP - periplasmic protein combats stress (NCBI), at 4,103,843 to 4,104,343
cpxP
b3915: fieF - ferrous iron efflux protein F (NCBI), at 4,104,492 to 4,105,394
fieF
Position (kb)
4103
4104
4105 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4102.846 kb on + strand, within cpxA at 4102.846 kb on - strand, within cpxA at 4102.846 kb on - strand, within cpxA at 4102.856 kb on - strand, within cpxA at 4102.856 kb on - strand, within cpxA at 4102.910 kb on + strand at 4102.941 kb on - strand at 4102.958 kb on - strand at 4102.988 kb on - strand at 4102.988 kb on - strand at 4103.043 kb on - strand at 4103.084 kb on + strand, within cpxR at 4103.084 kb on + strand, within cpxR at 4103.148 kb on - strand, within cpxR at 4103.207 kb on - strand, within cpxR at 4103.207 kb on - strand, within cpxR at 4103.210 kb on + strand, within cpxR at 4103.213 kb on - strand, within cpxR at 4103.226 kb on + strand, within cpxR at 4103.226 kb on + strand, within cpxR at 4103.273 kb on + strand, within cpxR at 4103.273 kb on + strand, within cpxR at 4103.274 kb on - strand, within cpxR at 4103.307 kb on - strand, within cpxR at 4103.340 kb on - strand, within cpxR at 4103.354 kb on - strand, within cpxR at 4103.354 kb on - strand, within cpxR at 4103.354 kb on - strand, within cpxR at 4103.365 kb on + strand, within cpxR at 4103.401 kb on - strand, within cpxR at 4103.401 kb on - strand, within cpxR at 4103.406 kb on - strand, within cpxR at 4103.420 kb on + strand, within cpxR at 4103.428 kb on - strand, within cpxR at 4103.428 kb on - strand, within cpxR at 4103.444 kb on + strand, within cpxR at 4103.452 kb on - strand, within cpxR at 4103.468 kb on + strand, within cpxR at 4103.468 kb on + strand, within cpxR at 4103.478 kb on + strand, within cpxR at 4103.496 kb on - strand, within cpxR at 4103.496 kb on - strand, within cpxR at 4103.496 kb on - strand, within cpxR at 4103.585 kb on + strand, within cpxR at 4103.585 kb on + strand, within cpxR at 4103.598 kb on + strand, within cpxR at 4103.620 kb on - strand, within cpxR at 4103.639 kb on + strand at 4103.676 kb on - strand at 4103.676 kb on - strand at 4103.695 kb on - strand at 4103.757 kb on + strand at 4103.858 kb on - strand at 4103.860 kb on - strand at 4103.864 kb on + strand at 4103.879 kb on - strand at 4103.879 kb on - strand at 4103.906 kb on + strand, within cpxP at 4103.953 kb on + strand, within cpxP at 4103.958 kb on + strand, within cpxP at 4103.958 kb on + strand, within cpxP at 4103.959 kb on - strand, within cpxP at 4103.964 kb on - strand, within cpxP at 4103.971 kb on - strand, within cpxP at 4103.989 kb on + strand, within cpxP at 4103.989 kb on + strand, within cpxP at 4103.997 kb on - strand, within cpxP at 4104.009 kb on - strand, within cpxP at 4104.241 kb on - strand, within cpxP at 4104.263 kb on + strand, within cpxP at 4104.276 kb on - strand, within cpxP at 4104.313 kb on + strand at 4104.343 kb on - strand at 4104.348 kb on - strand at 4104.348 kb on - strand at 4104.358 kb on - strand at 4104.358 kb on - strand at 4104.364 kb on + strand at 4104.364 kb on + strand at 4104.387 kb on - strand at 4104.421 kb on - strand at 4104.429 kb on + strand at 4104.429 kb on + strand at 4104.437 kb on - strand at 4104.442 kb on - strand at 4104.508 kb on - strand at 4104.510 kb on + strand at 4104.510 kb on + strand at 4104.515 kb on + strand at 4104.520 kb on + strand at 4104.520 kb on + strand at 4104.543 kb on - strand at 4104.584 kb on + strand, within fieF at 4104.584 kb on + strand, within fieF at 4104.592 kb on - strand, within fieF at 4104.592 kb on - strand, within fieF at 4104.592 kb on - strand, within fieF at 4104.592 kb on - strand, within fieF at 4104.615 kb on + strand, within fieF at 4104.615 kb on + strand, within fieF at 4104.625 kb on + strand, within fieF at 4104.682 kb on - strand, within fieF at 4104.698 kb on - strand, within fieF at 4104.698 kb on - strand, within fieF at 4104.724 kb on - strand, within fieF at 4104.726 kb on - strand, within fieF at 4104.726 kb on - strand, within fieF at 4104.751 kb on + strand, within fieF at 4104.766 kb on + strand, within fieF at 4104.771 kb on + strand, within fieF at 4104.785 kb on + strand, within fieF at 4104.841 kb on + strand, within fieF at 4104.849 kb on - strand, within fieF at 4104.849 kb on - strand, within fieF at 4104.896 kb on + strand, within fieF at 4104.896 kb on + strand, within fieF at 4104.920 kb on + strand, within fieF at 4104.945 kb on + strand, within fieF at 4104.950 kb on - strand, within fieF at 4104.956 kb on + strand, within fieF at 4104.956 kb on + strand, within fieF at 4105.001 kb on + strand, within fieF at 4105.001 kb on + strand, within fieF at 4105.001 kb on + strand, within fieF at 4105.004 kb on - strand, within fieF at 4105.005 kb on + strand, within fieF at 4105.009 kb on - strand, within fieF at 4105.019 kb on - strand, within fieF at 4105.019 kb on - strand, within fieF at 4105.024 kb on + strand, within fieF at 4105.084 kb on - strand, within fieF at 4105.112 kb on - strand, within fieF at 4105.115 kb on + strand, within fieF at 4105.123 kb on - strand, within fieF at 4105.123 kb on - strand, within fieF at 4105.204 kb on + strand, within fieF at 4105.204 kb on + strand, within fieF at 4105.204 kb on + strand, within fieF at 4105.204 kb on + strand, within fieF at 4105.279 kb on - strand, within fieF at 4105.288 kb on + strand, within fieF at 4105.297 kb on + strand, within fieF at 4105.301 kb on - strand, within fieF
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 4,102,846 + cpxA b3911 0.89 -2.5 4,102,846 - cpxA b3911 0.89 -0.6 4,102,846 - cpxA b3911 0.89 +1.8 4,102,856 - cpxA b3911 0.90 -1.8 4,102,856 - cpxA b3911 0.90 +0.6 4,102,910 + +1.0 4,102,941 - -0.7 4,102,958 - -1.7 4,102,988 - -3.1 4,102,988 - +1.5 4,103,043 - -2.9 4,103,084 + cpxR b3912 0.13 +2.3 4,103,084 + cpxR b3912 0.13 -3.2 4,103,148 - cpxR b3912 0.22 -2.2 4,103,207 - cpxR b3912 0.30 -0.7 4,103,207 - cpxR b3912 0.30 +3.7 4,103,210 + cpxR b3912 0.31 -0.0 4,103,213 - cpxR b3912 0.31 -0.2 4,103,226 + cpxR b3912 0.33 +2.1 4,103,226 + cpxR b3912 0.33 +1.6 4,103,273 + cpxR b3912 0.40 -1.0 4,103,273 + cpxR b3912 0.40 +2.2 4,103,274 - cpxR b3912 0.40 -0.7 4,103,307 - cpxR b3912 0.45 -3.4 4,103,340 - cpxR b3912 0.49 -3.4 4,103,354 - cpxR b3912 0.51 -1.8 4,103,354 - cpxR b3912 0.51 +1.0 4,103,354 - cpxR b3912 0.51 +2.1 4,103,365 + cpxR b3912 0.53 -3.2 4,103,401 - cpxR b3912 0.58 -3.8 4,103,401 - cpxR b3912 0.58 -2.2 4,103,406 - cpxR b3912 0.59 +1.9 4,103,420 + cpxR b3912 0.61 -2.2 4,103,428 - cpxR b3912 0.62 +3.5 4,103,428 - cpxR b3912 0.62 -1.0 4,103,444 + cpxR b3912 0.64 -0.3 4,103,452 - cpxR b3912 0.65 -1.9 4,103,468 + cpxR b3912 0.68 +0.6 4,103,468 + cpxR b3912 0.68 +0.4 4,103,478 + cpxR b3912 0.69 +1.3 4,103,496 - cpxR b3912 0.72 +0.8 4,103,496 - cpxR b3912 0.72 -2.7 4,103,496 - cpxR b3912 0.72 -2.1 4,103,585 + cpxR b3912 0.84 -2.8 4,103,585 + cpxR b3912 0.84 -2.1 4,103,598 + cpxR b3912 0.86 +2.2 4,103,620 - cpxR b3912 0.89 +0.3 4,103,639 + -2.8 4,103,676 - +0.9 4,103,676 - +0.6 4,103,695 - -1.7 4,103,757 + +0.6 4,103,858 - -3.1 4,103,860 - -2.2 4,103,864 + -2.3 4,103,879 - -0.8 4,103,879 - -2.6 4,103,906 + cpxP b4484 0.13 +0.3 4,103,953 + cpxP b4484 0.22 -2.2 4,103,958 + cpxP b4484 0.23 -1.3 4,103,958 + cpxP b4484 0.23 -1.0 4,103,959 - cpxP b4484 0.23 -1.7 4,103,964 - cpxP b4484 0.24 -2.4 4,103,971 - cpxP b4484 0.26 -4.3 4,103,989 + cpxP b4484 0.29 -1.8 4,103,989 + cpxP b4484 0.29 -0.2 4,103,997 - cpxP b4484 0.31 -2.0 4,104,009 - cpxP b4484 0.33 -2.2 4,104,241 - cpxP b4484 0.79 -2.9 4,104,263 + cpxP b4484 0.84 +0.9 4,104,276 - cpxP b4484 0.86 -1.5 4,104,313 + +0.8 4,104,343 - -1.3 4,104,348 - -2.3 4,104,348 - -2.3 4,104,358 - -1.8 4,104,358 - -3.9 4,104,364 + -2.0 4,104,364 + +1.1 4,104,387 - -2.0 4,104,421 - -0.9 4,104,429 + +1.9 4,104,429 + -0.9 4,104,437 - -0.0 4,104,442 - +0.5 4,104,508 - +0.5 4,104,510 + +1.2 4,104,510 + -1.1 4,104,515 + +0.3 4,104,520 + +0.6 4,104,520 + +1.9 4,104,543 - +2.2 4,104,584 + fieF b3915 0.10 +3.4 4,104,584 + fieF b3915 0.10 +1.9 4,104,592 - fieF b3915 0.11 -0.7 4,104,592 - fieF b3915 0.11 -0.6 4,104,592 - fieF b3915 0.11 -2.8 4,104,592 - fieF b3915 0.11 +0.6 4,104,615 + fieF b3915 0.14 +1.5 4,104,615 + fieF b3915 0.14 +2.0 4,104,625 + fieF b3915 0.15 -1.6 4,104,682 - fieF b3915 0.21 -0.2 4,104,698 - fieF b3915 0.23 +1.6 4,104,698 - fieF b3915 0.23 -1.3 4,104,724 - fieF b3915 0.26 +1.4 4,104,726 - fieF b3915 0.26 -1.5 4,104,726 - fieF b3915 0.26 -1.5 4,104,751 + fieF b3915 0.29 +0.6 4,104,766 + fieF b3915 0.30 +0.4 4,104,771 + fieF b3915 0.31 +3.0 4,104,785 + fieF b3915 0.32 -2.4 4,104,841 + fieF b3915 0.39 +0.9 4,104,849 - fieF b3915 0.40 -1.2 4,104,849 - fieF b3915 0.40 +3.8 4,104,896 + fieF b3915 0.45 +0.5 4,104,896 + fieF b3915 0.45 +1.8 4,104,920 + fieF b3915 0.47 -0.4 4,104,945 + fieF b3915 0.50 -1.2 4,104,950 - fieF b3915 0.51 -0.7 4,104,956 + fieF b3915 0.51 -0.6 4,104,956 + fieF b3915 0.51 -1.9 4,105,001 + fieF b3915 0.56 -1.1 4,105,001 + fieF b3915 0.56 +1.1 4,105,001 + fieF b3915 0.56 +1.4 4,105,004 - fieF b3915 0.57 +0.3 4,105,005 + fieF b3915 0.57 +0.7 4,105,009 - fieF b3915 0.57 -2.7 4,105,019 - fieF b3915 0.58 +0.6 4,105,019 - fieF b3915 0.58 -0.6 4,105,024 + fieF b3915 0.59 +0.7 4,105,084 - fieF b3915 0.66 -1.5 4,105,112 - fieF b3915 0.69 -2.3 4,105,115 + fieF b3915 0.69 -1.1 4,105,123 - fieF b3915 0.70 +3.1 4,105,123 - fieF b3915 0.70 +3.2 4,105,204 + fieF b3915 0.79 +2.2 4,105,204 + fieF b3915 0.79 +0.1 4,105,204 + fieF b3915 0.79 +0.7 4,105,204 + fieF b3915 0.79 +1.4 4,105,279 - fieF b3915 0.87 +1.1 4,105,288 + fieF b3915 0.88 -2.4 4,105,297 + fieF b3915 0.89 +2.1 4,105,301 - fieF b3915 0.90 +0.6
Or see this region's nucleotide sequence