Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedE and yedF overlap by 4 nucleotides yedF and yedK are separated by 108 nucleotides yedK and yedL are separated by 110 nucleotides yedL and yedN are separated by 143 nucleotides
b1929: yedE - predicted inner membrane protein (NCBI), at 2,006,301 to 2,007,506
yedE
b1930: yedF - hypothetical protein (NCBI), at 2,007,503 to 2,007,736
yedF
b1931: yedK - hypothetical protein (NCBI), at 2,007,845 to 2,008,513
yedK
b1932: yedL - predicted acyltransferase (NCBI), at 2,008,624 to 2,009,103
yedL
b4495: yedN - no description, at 2,009,247 to 2,009,381
yedN
Position (kb)
2007
2008
2009 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2006.951 kb on - strand, within yedE at 2006.989 kb on + strand, within yedE at 2007.062 kb on + strand, within yedE at 2007.062 kb on + strand, within yedE at 2007.131 kb on + strand, within yedE at 2007.131 kb on + strand, within yedE at 2007.244 kb on - strand, within yedE at 2007.257 kb on - strand, within yedE at 2007.261 kb on + strand, within yedE at 2007.263 kb on - strand, within yedE at 2007.314 kb on + strand, within yedE at 2007.541 kb on + strand, within yedF at 2007.542 kb on + strand, within yedF at 2007.627 kb on + strand, within yedF at 2007.628 kb on - strand, within yedF at 2007.630 kb on + strand, within yedF at 2007.656 kb on - strand, within yedF at 2007.710 kb on + strand, within yedF at 2007.744 kb on + strand at 2007.763 kb on - strand at 2007.767 kb on - strand at 2007.775 kb on - strand at 2007.931 kb on + strand, within yedK at 2008.001 kb on - strand, within yedK at 2008.003 kb on + strand, within yedK at 2008.003 kb on + strand, within yedK at 2008.095 kb on + strand, within yedK at 2008.119 kb on - strand, within yedK at 2008.295 kb on - strand, within yedK at 2008.389 kb on + strand, within yedK at 2008.506 kb on + strand at 2008.506 kb on + strand at 2008.534 kb on + strand at 2008.661 kb on - strand at 2008.671 kb on - strand at 2008.696 kb on - strand, within yedL at 2008.707 kb on - strand, within yedL at 2008.707 kb on - strand, within yedL at 2008.728 kb on + strand, within yedL at 2008.729 kb on + strand, within yedL at 2008.767 kb on + strand, within yedL at 2008.767 kb on + strand, within yedL at 2008.777 kb on + strand, within yedL at 2008.777 kb on + strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.899 kb on - strand, within yedL at 2008.899 kb on - strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.926 kb on + strand, within yedL at 2008.926 kb on + strand, within yedL at 2008.929 kb on - strand, within yedL at 2008.929 kb on - strand, within yedL at 2008.950 kb on - strand, within yedL at 2008.950 kb on - strand, within yedL at 2008.958 kb on + strand, within yedL at 2008.981 kb on - strand, within yedL at 2009.019 kb on - strand, within yedL at 2009.102 kb on + strand at 2009.171 kb on + strand at 2009.179 kb on - strand at 2009.184 kb on - strand at 2009.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 2,006,951 - yedE b1929 0.54 -2.2 2,006,989 + yedE b1929 0.57 -2.7 2,007,062 + yedE b1929 0.63 -3.7 2,007,062 + yedE b1929 0.63 +1.5 2,007,131 + yedE b1929 0.69 -0.6 2,007,131 + yedE b1929 0.69 -1.3 2,007,244 - yedE b1929 0.78 +1.2 2,007,257 - yedE b1929 0.79 +0.5 2,007,261 + yedE b1929 0.80 +0.5 2,007,263 - yedE b1929 0.80 -3.7 2,007,314 + yedE b1929 0.84 +0.2 2,007,541 + yedF b1930 0.16 -0.4 2,007,542 + yedF b1930 0.17 +0.2 2,007,627 + yedF b1930 0.53 -0.8 2,007,628 - yedF b1930 0.53 +2.9 2,007,630 + yedF b1930 0.54 -1.1 2,007,656 - yedF b1930 0.65 +0.7 2,007,710 + yedF b1930 0.88 +0.9 2,007,744 + +1.7 2,007,763 - +1.7 2,007,767 - -0.9 2,007,775 - +0.1 2,007,931 + yedK b1931 0.13 +1.4 2,008,001 - yedK b1931 0.23 -0.3 2,008,003 + yedK b1931 0.24 -2.3 2,008,003 + yedK b1931 0.24 -1.7 2,008,095 + yedK b1931 0.37 -0.6 2,008,119 - yedK b1931 0.41 -2.4 2,008,295 - yedK b1931 0.67 +0.2 2,008,389 + yedK b1931 0.81 -2.8 2,008,506 + -0.6 2,008,506 + -1.8 2,008,534 + +1.6 2,008,661 - -1.1 2,008,671 - +0.4 2,008,696 - yedL b1932 0.15 +1.1 2,008,707 - yedL b1932 0.17 +3.0 2,008,707 - yedL b1932 0.17 -1.8 2,008,728 + yedL b1932 0.22 +1.8 2,008,729 + yedL b1932 0.22 +1.8 2,008,767 + yedL b1932 0.30 +0.4 2,008,767 + yedL b1932 0.30 -0.0 2,008,777 + yedL b1932 0.32 +1.7 2,008,777 + yedL b1932 0.32 -0.9 2,008,785 - yedL b1932 0.34 -0.6 2,008,785 - yedL b1932 0.34 -2.4 2,008,785 - yedL b1932 0.34 +2.0 2,008,785 - yedL b1932 0.34 +0.1 2,008,785 - yedL b1932 0.34 +0.8 2,008,785 - yedL b1932 0.34 +2.5 2,008,899 - yedL b1932 0.57 -0.9 2,008,899 - yedL b1932 0.57 +0.1 2,008,921 + yedL b1932 0.62 +0.7 2,008,921 + yedL b1932 0.62 +0.7 2,008,921 + yedL b1932 0.62 +0.9 2,008,926 + yedL b1932 0.63 +0.5 2,008,926 + yedL b1932 0.63 +1.8 2,008,929 - yedL b1932 0.64 -2.8 2,008,929 - yedL b1932 0.64 -0.7 2,008,950 - yedL b1932 0.68 -1.6 2,008,950 - yedL b1932 0.68 -1.6 2,008,958 + yedL b1932 0.70 +0.5 2,008,981 - yedL b1932 0.74 -0.4 2,009,019 - yedL b1932 0.82 -3.5 2,009,102 + -0.1 2,009,171 + +0.3 2,009,179 - +1.2 2,009,184 - -0.4 2,009,189 + -1.6
Or see this region's nucleotide sequence