Strain Fitness in Escherichia coli BW25113 around b4278
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
4,499,230 | + | -0.1 | |||
4,499,238 | - | +1.4 | |||
4,499,279 | - | +1.2 | |||
4,499,290 | + | +0.8 | |||
4,499,290 | + | +1.5 | |||
4,499,309 | - | +0.8 | |||
4,499,385 | - | yjgZ | b4277 | 0.31 | +3.4 |
4,499,387 | + | yjgZ | b4277 | 0.32 | +0.1 |
4,499,408 | - | yjgZ | b4277 | 0.38 | +1.1 |
4,499,451 | + | yjgZ | b4277 | 0.51 | +0.5 |
4,499,466 | - | yjgZ | b4277 | 0.55 | +1.8 |
4,499,486 | - | yjgZ | b4277 | 0.62 | -2.5 |
4,499,503 | + | yjgZ | b4277 | 0.67 | +1.2 |
4,499,552 | - | yjgZ | b4277 | 0.82 | -0.1 |
4,499,584 | - | +2.4 | |||
4,499,612 | + | +1.1 | |||
4,499,612 | + | +0.5 | |||
4,499,641 | - | +0.1 | |||
4,499,721 | - | +1.2 | |||
4,499,735 | - | +3.2 | |||
4,499,735 | - | +0.5 | |||
4,499,752 | - | -1.1 | |||
4,499,752 | - | -1.6 | |||
4,499,770 | + | +1.6 | |||
4,499,770 | + | +2.3 | |||
4,499,783 | + | -3.4 | |||
4,499,793 | + | -1.4 | |||
4,499,799 | + | +3.1 | |||
4,499,834 | + | -0.3 | |||
4,499,834 | + | -1.7 | |||
4,499,845 | + | -1.0 | |||
4,499,845 | + | -2.5 | |||
4,499,901 | + | +0.6 | |||
4,499,901 | + | +0.2 | |||
4,499,906 | + | +3.3 | |||
4,499,948 | - | -0.4 | |||
4,499,948 | - | -1.7 | |||
4,499,954 | + | -1.0 | |||
4,499,980 | - | +1.9 | |||
4,499,999 | + | -2.9 | |||
4,499,999 | + | -0.2 | |||
4,500,007 | - | -0.8 | |||
4,500,055 | - | -0.5 | |||
4,500,084 | + | +1.0 | |||
4,500,174 | - | -0.6 | |||
4,500,185 | - | -0.2 | |||
4,500,196 | - | -3.3 | |||
4,500,196 | - | +0.7 | |||
4,500,309 | + | insG | b4278 | 0.14 | +0.9 |
4,500,464 | + | insG | b4278 | 0.25 | +2.1 |
4,500,477 | - | insG | b4278 | 0.26 | +0.7 |
4,500,480 | - | insG | b4278 | 0.27 | +2.4 |
4,500,524 | + | insG | b4278 | 0.30 | +2.6 |
4,500,529 | + | insG | b4278 | 0.30 | +2.3 |
4,500,532 | + | insG | b4278 | 0.31 | +0.2 |
4,500,534 | + | insG | b4278 | 0.31 | +2.9 |
4,500,540 | - | insG | b4278 | 0.31 | +1.2 |
4,500,637 | + | insG | b4278 | 0.38 | +2.0 |
4,500,637 | + | insG | b4278 | 0.38 | +2.9 |
4,500,796 | - | insG | b4278 | 0.50 | -3.3 |
4,500,804 | - | insG | b4278 | 0.51 | -1.0 |
4,500,814 | - | insG | b4278 | 0.52 | +3.7 |
4,500,814 | - | insG | b4278 | 0.52 | +1.5 |
4,500,937 | - | insG | b4278 | 0.61 | -2.1 |
4,500,995 | + | insG | b4278 | 0.65 | +2.4 |
4,500,995 | + | insG | b4278 | 0.65 | +2.1 |
4,501,021 | - | insG | b4278 | 0.67 | -1.6 |
4,501,021 | - | insG | b4278 | 0.67 | +1.3 |
4,501,052 | - | insG | b4278 | 0.70 | +0.7 |
4,501,062 | + | insG | b4278 | 0.70 | +0.7 |
4,501,108 | + | insG | b4278 | 0.74 | -0.3 |
4,501,263 | - | insG | b4278 | 0.86 | +2.2 |
4,501,263 | - | insG | b4278 | 0.86 | -1.1 |
4,501,275 | + | insG | b4278 | 0.86 | -0.3 |
4,501,287 | - | insG | b4278 | 0.87 | +1.2 |
4,501,432 | + | +2.1 | |||
4,501,432 | + | -1.6 | |||
4,501,498 | + | +1.8 | |||
4,501,759 | + | +0.4 | |||
4,501,759 | + | +0.0 | |||
4,501,768 | + | -0.8 | |||
4,501,768 | + | -1.7 | |||
4,501,778 | + | -1.5 | |||
4,501,778 | + | +2.6 | |||
4,501,778 | + | +2.9 | |||
4,501,799 | + | -0.3 | |||
4,501,799 | + | -1.2 | |||
4,501,821 | + | -3.2 | |||
4,501,821 | + | -4.6 | |||
4,501,821 | + | +0.6 | |||
4,501,821 | + | +0.7 | |||
4,501,821 | + | +2.3 | |||
4,501,823 | + | +0.3 | |||
4,501,826 | + | -2.7 | |||
4,501,837 | + | +1.0 | |||
4,501,875 | + | +0.6 | |||
4,501,875 | + | +0.8 | |||
4,501,887 | + | +0.6 | |||
4,501,906 | + | -2.8 | |||
4,501,914 | + | +2.0 | |||
4,501,918 | + | +2.3 | |||
4,501,918 | + | -0.2 | |||
4,501,956 | + | -0.3 | |||
4,501,956 | + | -3.4 | |||
4,501,957 | + | -3.3 | |||
4,501,957 | + | +0.0 | |||
4,501,971 | + | -2.1 | |||
4,501,974 | + | +1.6 | |||
4,501,981 | + | -2.7 | |||
4,502,265 | - | yjhB | b4279 | 0.15 | +0.1 |
4,502,276 | - | yjhB | b4279 | 0.16 | +2.4 |
4,502,363 | + | yjhB | b4279 | 0.23 | -2.9 |
Or see this region's nucleotide sequence