Strain Fitness in Escherichia coli BW25113 around b4231

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntytfT and yjfF overlap by 14 nucleotidesyjfF and fbp are separated by 32 nucleotides b4230: ytfT - predicted sugar transporter subunit: membrane component of ABC superfamily (RefSeq), at 4,450,594 to 4,451,619 ytfT b4231: yjfF - putative transport system permease protein (VIMSS), at 4,451,606 to 4,452,601 yjfF b4232: fbp - fructose-1,6-bisphosphatase (NCBI), at 4,452,634 to 4,453,632 fbp Position (kb) 4451 4452 4453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4450.666 kb on - strandat 4450.668 kb on - strandat 4450.675 kb on - strandat 4450.702 kb on - strand, within ytfTat 4450.708 kb on - strand, within ytfTat 4450.716 kb on - strand, within ytfTat 4450.755 kb on - strand, within ytfTat 4450.755 kb on - strand, within ytfTat 4450.760 kb on - strand, within ytfTat 4450.765 kb on - strand, within ytfTat 4450.765 kb on - strand, within ytfTat 4450.826 kb on - strand, within ytfTat 4450.832 kb on + strand, within ytfTat 4450.843 kb on - strand, within ytfTat 4450.853 kb on - strand, within ytfTat 4450.858 kb on + strand, within ytfTat 4450.865 kb on - strand, within ytfTat 4450.865 kb on - strand, within ytfTat 4451.166 kb on + strand, within ytfTat 4451.218 kb on + strand, within ytfTat 4451.218 kb on + strand, within ytfTat 4451.226 kb on - strand, within ytfTat 4451.287 kb on - strand, within ytfTat 4451.298 kb on + strand, within ytfTat 4451.302 kb on - strand, within ytfTat 4451.302 kb on - strand, within ytfTat 4451.360 kb on + strand, within ytfTat 4451.473 kb on + strand, within ytfTat 4451.586 kb on + strandat 4451.586 kb on + strandat 4451.598 kb on + strandat 4451.598 kb on + strandat 4451.606 kb on - strandat 4451.646 kb on + strandat 4451.775 kb on + strand, within yjfFat 4451.775 kb on + strand, within yjfFat 4451.791 kb on - strand, within yjfFat 4451.830 kb on - strand, within yjfFat 4451.830 kb on - strand, within yjfFat 4451.944 kb on - strand, within yjfFat 4452.005 kb on - strand, within yjfFat 4452.005 kb on - strand, within yjfFat 4452.046 kb on - strand, within yjfFat 4452.046 kb on - strand, within yjfFat 4452.131 kb on + strand, within yjfFat 4452.132 kb on + strand, within yjfFat 4452.169 kb on + strand, within yjfFat 4452.169 kb on + strand, within yjfFat 4452.187 kb on - strand, within yjfFat 4452.307 kb on - strand, within yjfFat 4452.398 kb on + strand, within yjfFat 4452.406 kb on - strand, within yjfFat 4452.406 kb on - strand, within yjfFat 4452.442 kb on + strand, within yjfFat 4452.471 kb on + strand, within yjfFat 4452.555 kb on - strandat 4452.623 kb on + strandat 4452.623 kb on + strandat 4452.627 kb on - strandat 4452.685 kb on - strandat 4452.709 kb on + strandat 4452.770 kb on + strand, within fbpat 4452.867 kb on - strand, within fbpat 4452.869 kb on - strand, within fbpat 4452.869 kb on - strand, within fbpat 4452.906 kb on + strand, within fbpat 4452.926 kb on + strand, within fbpat 4452.934 kb on - strand, within fbpat 4452.971 kb on + strand, within fbpat 4452.989 kb on + strand, within fbpat 4452.989 kb on + strand, within fbpat 4453.022 kb on - strand, within fbpat 4453.102 kb on + strand, within fbpat 4453.105 kb on - strand, within fbpat 4453.132 kb on - strand, within fbpat 4453.139 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.147 kb on + strand, within fbpat 4453.155 kb on - strand, within fbpat 4453.155 kb on - strand, within fbpat 4453.226 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.289 kb on + strand, within fbpat 4453.306 kb on + strand, within fbpat 4453.314 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.368 kb on - strand, within fbpat 4453.374 kb on - strand, within fbpat 4453.380 kb on - strand, within fbpat 4453.380 kb on - strand, within fbpat 4453.391 kb on - strand, within fbpat 4453.456 kb on + strand, within fbpat 4453.456 kb on + strand, within fbpat 4453.508 kb on - strand, within fbpat 4453.518 kb on - strand, within fbpat 4453.532 kb on - strand, within fbpat 4453.562 kb on + strandat 4453.569 kb on + strandat 4453.580 kb on - strandat 4453.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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4,450,666 - +1.2
4,450,668 - +2.6
4,450,675 - +0.5
4,450,702 - ytfT b4230 0.11 -1.6
4,450,708 - ytfT b4230 0.11 +3.1
4,450,716 - ytfT b4230 0.12 +1.5
4,450,755 - ytfT b4230 0.16 +2.7
4,450,755 - ytfT b4230 0.16 -1.7
4,450,760 - ytfT b4230 0.16 +0.4
4,450,765 - ytfT b4230 0.17 -0.9
4,450,765 - ytfT b4230 0.17 +1.9
4,450,826 - ytfT b4230 0.23 +0.7
4,450,832 + ytfT b4230 0.23 +1.5
4,450,843 - ytfT b4230 0.24 +0.8
4,450,853 - ytfT b4230 0.25 +1.2
4,450,858 + ytfT b4230 0.26 -0.3
4,450,865 - ytfT b4230 0.26 -1.4
4,450,865 - ytfT b4230 0.26 -0.4
4,451,166 + ytfT b4230 0.56 -2.3
4,451,218 + ytfT b4230 0.61 +1.2
4,451,218 + ytfT b4230 0.61 +0.3
4,451,226 - ytfT b4230 0.62 +1.0
4,451,287 - ytfT b4230 0.68 -2.6
4,451,298 + ytfT b4230 0.69 -3.6
4,451,302 - ytfT b4230 0.69 +0.8
4,451,302 - ytfT b4230 0.69 -2.5
4,451,360 + ytfT b4230 0.75 +1.4
4,451,473 + ytfT b4230 0.86 -1.4
4,451,586 + -2.1
4,451,586 + -1.5
4,451,598 + +1.4
4,451,598 + -0.1
4,451,606 - -1.3
4,451,646 + -2.9
4,451,775 + yjfF b4231 0.17 +0.3
4,451,775 + yjfF b4231 0.17 +1.9
4,451,791 - yjfF b4231 0.19 +0.7
4,451,830 - yjfF b4231 0.22 +3.3
4,451,830 - yjfF b4231 0.22 -1.9
4,451,944 - yjfF b4231 0.34 -0.1
4,452,005 - yjfF b4231 0.40 -0.6
4,452,005 - yjfF b4231 0.40 -1.0
4,452,046 - yjfF b4231 0.44 +1.2
4,452,046 - yjfF b4231 0.44 +0.9
4,452,131 + yjfF b4231 0.53 -1.9
4,452,132 + yjfF b4231 0.53 +2.7
4,452,169 + yjfF b4231 0.57 -0.6
4,452,169 + yjfF b4231 0.57 +1.1
4,452,187 - yjfF b4231 0.58 -2.9
4,452,307 - yjfF b4231 0.70 +2.9
4,452,398 + yjfF b4231 0.80 +1.7
4,452,406 - yjfF b4231 0.80 +1.4
4,452,406 - yjfF b4231 0.80 -2.4
4,452,442 + yjfF b4231 0.84 +1.5
4,452,471 + yjfF b4231 0.87 -2.4
4,452,555 - +1.6
4,452,623 + +0.8
4,452,623 + +4.0
4,452,627 - +2.8
4,452,685 - +0.2
4,452,709 + -1.0
4,452,770 + fbp b4232 0.14 +2.7
4,452,867 - fbp b4232 0.23 -1.1
4,452,869 - fbp b4232 0.24 +1.3
4,452,869 - fbp b4232 0.24 +2.9
4,452,906 + fbp b4232 0.27 +1.7
4,452,926 + fbp b4232 0.29 +0.2
4,452,934 - fbp b4232 0.30 -0.8
4,452,971 + fbp b4232 0.34 -0.3
4,452,989 + fbp b4232 0.36 -1.8
4,452,989 + fbp b4232 0.36 +2.0
4,453,022 - fbp b4232 0.39 -0.2
4,453,102 + fbp b4232 0.47 +0.9
4,453,105 - fbp b4232 0.47 -2.3
4,453,132 - fbp b4232 0.50 +1.1
4,453,139 + fbp b4232 0.51 -3.5
4,453,147 + fbp b4232 0.51 -1.6
4,453,147 + fbp b4232 0.51 +1.7
4,453,147 + fbp b4232 0.51 -1.8
4,453,155 - fbp b4232 0.52 -2.2
4,453,155 - fbp b4232 0.52 -0.9
4,453,226 + fbp b4232 0.59 +1.7
4,453,289 + fbp b4232 0.66 -2.6
4,453,289 + fbp b4232 0.66 +0.3
4,453,289 + fbp b4232 0.66 -2.4
4,453,306 + fbp b4232 0.67 +2.1
4,453,314 - fbp b4232 0.68 -1.4
4,453,368 - fbp b4232 0.73 -1.0
4,453,368 - fbp b4232 0.73 -1.8
4,453,368 - fbp b4232 0.73 -2.1
4,453,374 - fbp b4232 0.74 +1.9
4,453,380 - fbp b4232 0.75 -0.8
4,453,380 - fbp b4232 0.75 -2.8
4,453,391 - fbp b4232 0.76 -0.7
4,453,456 + fbp b4232 0.82 -2.6
4,453,456 + fbp b4232 0.82 -2.4
4,453,508 - fbp b4232 0.87 -0.3
4,453,518 - fbp b4232 0.88 -3.2
4,453,532 - fbp b4232 0.90 +2.1
4,453,562 + +2.6
4,453,569 + +2.0
4,453,580 - +0.5
4,453,580 - -1.8

Or see this region's nucleotide sequence