Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjcZ and proP are separated by 263 nucleotides proP and pmrR are separated by 111 nucleotides pmrR and basS overlap by 25 nucleotides
b4110: yjcZ - orf, hypothetical protein (VIMSS), at 4,327,383 to 4,328,261
yjcZ
b4111: proP - proline/glycine betaine transporter (NCBI), at 4,328,525 to 4,330,027
proP
b4703: pmrR - predicted regulator of BasS activity, membrane protein (NCBI), at 4,330,139 to 4,330,228
pmrR
b4112: basS - sensory histidine kinase in two-component regulatory system with BasR (NCBI), at 4,330,204 to 4,331,295
basS
Position (kb)
4328
4329
4330
4331 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 4327.634 kb on - strand, within yjcZ at 4327.663 kb on + strand, within yjcZ at 4327.716 kb on - strand, within yjcZ at 4327.739 kb on + strand, within yjcZ at 4327.793 kb on + strand, within yjcZ at 4327.794 kb on + strand, within yjcZ at 4327.823 kb on - strand, within yjcZ at 4327.853 kb on + strand, within yjcZ at 4327.902 kb on + strand, within yjcZ at 4327.902 kb on + strand, within yjcZ at 4327.928 kb on + strand, within yjcZ at 4328.009 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.183 kb on + strand at 4328.200 kb on + strand at 4328.208 kb on - strand at 4328.208 kb on - strand at 4328.267 kb on + strand at 4328.267 kb on + strand at 4328.555 kb on + strand at 4328.555 kb on + strand at 4328.615 kb on + strand at 4328.729 kb on - strand, within proP at 4328.729 kb on - strand, within proP at 4328.729 kb on - strand, within proP at 4328.834 kb on + strand, within proP at 4328.834 kb on + strand, within proP at 4328.834 kb on - strand, within proP at 4328.840 kb on + strand, within proP at 4328.849 kb on + strand, within proP at 4328.854 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.873 kb on - strand, within proP at 4328.873 kb on - strand, within proP at 4328.888 kb on + strand, within proP at 4328.888 kb on + strand, within proP at 4328.917 kb on + strand, within proP at 4328.954 kb on + strand, within proP at 4328.966 kb on - strand, within proP at 4328.986 kb on + strand, within proP at 4329.118 kb on + strand, within proP at 4329.144 kb on - strand, within proP at 4329.185 kb on + strand, within proP at 4329.237 kb on + strand, within proP at 4329.245 kb on + strand, within proP at 4329.270 kb on + strand, within proP at 4329.270 kb on + strand, within proP at 4329.271 kb on + strand, within proP at 4329.288 kb on + strand, within proP at 4329.323 kb on - strand, within proP at 4329.323 kb on - strand, within proP at 4329.323 kb on - strand, within proP at 4329.359 kb on - strand, within proP at 4329.373 kb on + strand, within proP at 4329.399 kb on + strand, within proP at 4329.402 kb on - strand, within proP at 4329.402 kb on - strand, within proP at 4329.452 kb on - strand, within proP at 4329.452 kb on - strand, within proP at 4329.458 kb on - strand, within proP at 4329.458 kb on - strand, within proP at 4329.475 kb on + strand, within proP at 4329.509 kb on + strand, within proP at 4329.509 kb on + strand, within proP at 4329.606 kb on - strand, within proP at 4329.606 kb on - strand, within proP at 4329.635 kb on + strand, within proP at 4329.635 kb on + strand, within proP at 4329.670 kb on + strand, within proP at 4329.670 kb on + strand, within proP at 4329.684 kb on - strand, within proP at 4329.684 kb on - strand, within proP at 4329.867 kb on + strand, within proP at 4329.885 kb on + strand at 4329.993 kb on + strand at 4330.006 kb on - strand at 4330.009 kb on - strand at 4330.086 kb on - strand at 4330.127 kb on - strand at 4330.230 kb on - strand at 4330.244 kb on + strand at 4330.247 kb on - strand at 4330.247 kb on - strand at 4330.249 kb on + strand at 4330.259 kb on + strand at 4330.303 kb on + strand at 4330.303 kb on + strand at 4330.350 kb on + strand, within basS at 4330.404 kb on + strand, within basS at 4330.413 kb on - strand, within basS at 4330.432 kb on - strand, within basS at 4330.433 kb on + strand, within basS at 4330.441 kb on - strand, within basS at 4330.447 kb on + strand, within basS at 4330.461 kb on + strand, within basS at 4330.488 kb on + strand, within basS at 4330.488 kb on + strand, within basS at 4330.537 kb on - strand, within basS at 4330.537 kb on - strand, within basS at 4330.542 kb on - strand, within basS at 4330.549 kb on + strand, within basS at 4330.557 kb on - strand, within basS at 4330.576 kb on + strand, within basS at 4330.576 kb on + strand, within basS at 4330.588 kb on - strand, within basS at 4330.588 kb on - strand, within basS at 4330.616 kb on + strand, within basS at 4330.616 kb on + strand, within basS at 4330.616 kb on + strand, within basS at 4330.616 kb on + strand, within basS at 4330.695 kb on + strand, within basS at 4330.695 kb on + strand, within basS at 4330.732 kb on + strand, within basS at 4330.738 kb on - strand, within basS at 4330.738 kb on - strand, within basS at 4330.756 kb on - strand, within basS at 4330.772 kb on - strand, within basS at 4330.861 kb on - strand, within basS at 4330.861 kb on - strand, within basS at 4330.876 kb on - strand, within basS at 4330.885 kb on + strand, within basS at 4330.914 kb on + strand, within basS at 4330.914 kb on + strand, within basS at 4330.958 kb on - strand, within basS at 4331.007 kb on - strand, within basS
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 4,327,634 - yjcZ b4110 0.29 -1.3 4,327,663 + yjcZ b4110 0.32 +0.6 4,327,716 - yjcZ b4110 0.38 +0.2 4,327,739 + yjcZ b4110 0.41 +1.5 4,327,793 + yjcZ b4110 0.47 +0.5 4,327,794 + yjcZ b4110 0.47 +2.0 4,327,823 - yjcZ b4110 0.50 +0.7 4,327,853 + yjcZ b4110 0.53 -1.5 4,327,902 + yjcZ b4110 0.59 +0.8 4,327,902 + yjcZ b4110 0.59 +0.2 4,327,928 + yjcZ b4110 0.62 +1.0 4,328,009 + yjcZ b4110 0.71 -0.4 4,328,039 + yjcZ b4110 0.75 +1.6 4,328,039 + yjcZ b4110 0.75 -1.6 4,328,039 + yjcZ b4110 0.75 +0.8 4,328,183 + -1.7 4,328,200 + -0.3 4,328,208 - -0.5 4,328,208 - +0.6 4,328,267 + +3.1 4,328,267 + +1.2 4,328,555 + +3.7 4,328,555 + +3.4 4,328,615 + +3.1 4,328,729 - proP b4111 0.14 +2.1 4,328,729 - proP b4111 0.14 +3.9 4,328,729 - proP b4111 0.14 +2.1 4,328,834 + proP b4111 0.21 +3.2 4,328,834 + proP b4111 0.21 +2.5 4,328,834 - proP b4111 0.21 +2.9 4,328,840 + proP b4111 0.21 +4.1 4,328,849 + proP b4111 0.22 +4.0 4,328,854 + proP b4111 0.22 +0.5 4,328,865 + proP b4111 0.23 +4.1 4,328,865 + proP b4111 0.23 +2.0 4,328,865 + proP b4111 0.23 +3.8 4,328,865 + proP b4111 0.23 +1.5 4,328,873 - proP b4111 0.23 +2.8 4,328,873 - proP b4111 0.23 +3.6 4,328,888 + proP b4111 0.24 +3.5 4,328,888 + proP b4111 0.24 +3.1 4,328,917 + proP b4111 0.26 +4.4 4,328,954 + proP b4111 0.29 +2.3 4,328,966 - proP b4111 0.29 +2.8 4,328,986 + proP b4111 0.31 +3.8 4,329,118 + proP b4111 0.39 +2.5 4,329,144 - proP b4111 0.41 -0.0 4,329,185 + proP b4111 0.44 +3.6 4,329,237 + proP b4111 0.47 +2.2 4,329,245 + proP b4111 0.48 +2.5 4,329,270 + proP b4111 0.50 +2.9 4,329,270 + proP b4111 0.50 +3.0 4,329,271 + proP b4111 0.50 +1.6 4,329,288 + proP b4111 0.51 +2.8 4,329,323 - proP b4111 0.53 +3.5 4,329,323 - proP b4111 0.53 +6.0 4,329,323 - proP b4111 0.53 +0.8 4,329,359 - proP b4111 0.55 -0.5 4,329,373 + proP b4111 0.56 +0.3 4,329,399 + proP b4111 0.58 +2.1 4,329,402 - proP b4111 0.58 -0.8 4,329,402 - proP b4111 0.58 -0.8 4,329,452 - proP b4111 0.62 +2.7 4,329,452 - proP b4111 0.62 +2.6 4,329,458 - proP b4111 0.62 +2.9 4,329,458 - proP b4111 0.62 +1.5 4,329,475 + proP b4111 0.63 +1.9 4,329,509 + proP b4111 0.65 +1.8 4,329,509 + proP b4111 0.65 +1.5 4,329,606 - proP b4111 0.72 +1.7 4,329,606 - proP b4111 0.72 +3.0 4,329,635 + proP b4111 0.74 +3.1 4,329,635 + proP b4111 0.74 +1.3 4,329,670 + proP b4111 0.76 +4.2 4,329,670 + proP b4111 0.76 +2.2 4,329,684 - proP b4111 0.77 +2.1 4,329,684 - proP b4111 0.77 +3.9 4,329,867 + proP b4111 0.89 +1.2 4,329,885 + +3.1 4,329,993 + +3.7 4,330,006 - +3.5 4,330,009 - +3.5 4,330,086 - +1.8 4,330,127 - +2.7 4,330,230 - +1.2 4,330,244 + +1.9 4,330,247 - -0.2 4,330,247 - +1.1 4,330,249 + +2.9 4,330,259 + +1.7 4,330,303 + -2.7 4,330,303 + -2.7 4,330,350 + basS b4112 0.13 -1.8 4,330,404 + basS b4112 0.18 +2.1 4,330,413 - basS b4112 0.19 -2.3 4,330,432 - basS b4112 0.21 -0.2 4,330,433 + basS b4112 0.21 +0.5 4,330,441 - basS b4112 0.22 +1.2 4,330,447 + basS b4112 0.22 +1.7 4,330,461 + basS b4112 0.24 -0.2 4,330,488 + basS b4112 0.26 -2.0 4,330,488 + basS b4112 0.26 -1.0 4,330,537 - basS b4112 0.30 +0.4 4,330,537 - basS b4112 0.30 +0.5 4,330,542 - basS b4112 0.31 +1.6 4,330,549 + basS b4112 0.32 +1.4 4,330,557 - basS b4112 0.32 +2.0 4,330,576 + basS b4112 0.34 -2.6 4,330,576 + basS b4112 0.34 +0.3 4,330,588 - basS b4112 0.35 -1.8 4,330,588 - basS b4112 0.35 +0.1 4,330,616 + basS b4112 0.38 -2.7 4,330,616 + basS b4112 0.38 -2.7 4,330,616 + basS b4112 0.38 -2.8 4,330,616 + basS b4112 0.38 +3.4 4,330,695 + basS b4112 0.45 -2.0 4,330,695 + basS b4112 0.45 -0.9 4,330,732 + basS b4112 0.48 +0.7 4,330,738 - basS b4112 0.49 -0.6 4,330,738 - basS b4112 0.49 +2.4 4,330,756 - basS b4112 0.51 +1.0 4,330,772 - basS b4112 0.52 +1.5 4,330,861 - basS b4112 0.60 +1.3 4,330,861 - basS b4112 0.60 +0.0 4,330,876 - basS b4112 0.62 +2.1 4,330,885 + basS b4112 0.62 +1.4 4,330,914 + basS b4112 0.65 -3.9 4,330,914 + basS b4112 0.65 -1.8 4,330,958 - basS b4112 0.69 +3.2 4,331,007 - basS b4112 0.74 -0.5
Or see this region's nucleotide sequence