Strain Fitness in Escherichia coli BW25113 around b3870
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
4,053,680 | - | glnL | b3869 | 0.35 | -0.1 |
4,053,680 | - | glnL | b3869 | 0.35 | +1.5 |
4,053,683 | - | glnL | b3869 | 0.35 | -0.5 |
4,053,713 | - | glnL | b3869 | 0.38 | -1.3 |
4,053,753 | + | glnL | b3869 | 0.42 | -1.0 |
4,053,768 | - | glnL | b3869 | 0.43 | -0.3 |
4,053,768 | - | glnL | b3869 | 0.43 | +1.0 |
4,053,788 | - | glnL | b3869 | 0.45 | +4.7 |
4,053,790 | + | glnL | b3869 | 0.45 | +0.6 |
4,053,801 | + | glnL | b3869 | 0.46 | +2.8 |
4,053,803 | - | glnL | b3869 | 0.47 | +1.9 |
4,053,837 | + | glnL | b3869 | 0.50 | +1.7 |
4,053,837 | + | glnL | b3869 | 0.50 | -2.1 |
4,053,851 | - | glnL | b3869 | 0.51 | +0.2 |
4,053,851 | - | glnL | b3869 | 0.51 | +1.9 |
4,053,979 | + | glnL | b3869 | 0.63 | +1.7 |
4,053,982 | + | +1.0 | |||
4,053,988 | + | glnL | b3869 | 0.64 | +3.6 |
4,054,065 | + | glnL | b3869 | 0.72 | +1.0 |
4,054,079 | - | glnL | b3869 | 0.73 | -2.2 |
4,054,124 | - | glnL | b3869 | 0.77 | -2.1 |
4,054,170 | + | glnL | b3869 | 0.82 | +0.3 |
4,054,299 | + | +0.8 | |||
4,054,309 | + | +2.2 | |||
4,054,367 | - | -0.1 | |||
4,054,367 | - | +1.3 | |||
4,054,476 | + | +0.9 | |||
4,054,481 | - | -2.2 | |||
4,054,481 | - | -3.1 | |||
4,054,523 | + | +1.7 | |||
4,054,523 | + | -0.4 | |||
4,054,549 | - | -2.9 | |||
4,054,568 | - | -0.0 | |||
4,054,576 | + | -1.1 | |||
4,054,616 | - | -1.2 | |||
4,054,616 | - | -0.6 | |||
4,054,616 | - | +1.4 | |||
4,054,655 | + | +1.8 | |||
4,054,657 | + | +3.2 | |||
4,054,663 | - | +1.4 | |||
4,054,725 | - | -1.2 | |||
4,054,914 | + | glnA | b3870 | 0.19 | +0.1 |
4,054,950 | + | glnA | b3870 | 0.21 | +0.1 |
4,055,087 | + | glnA | b3870 | 0.31 | -0.9 |
4,055,096 | + | glnA | b3870 | 0.32 | +0.2 |
4,055,186 | - | glnA | b3870 | 0.38 | -0.9 |
4,055,214 | + | glnA | b3870 | 0.40 | +0.4 |
4,055,222 | - | glnA | b3870 | 0.41 | +0.3 |
4,055,262 | - | glnA | b3870 | 0.44 | -1.0 |
4,055,331 | - | glnA | b3870 | 0.48 | -1.2 |
4,055,383 | - | glnA | b3870 | 0.52 | -1.0 |
4,055,398 | + | glnA | b3870 | 0.53 | +0.3 |
4,055,406 | - | glnA | b3870 | 0.54 | +1.2 |
4,055,411 | - | glnA | b3870 | 0.54 | +0.1 |
4,055,420 | - | glnA | b3870 | 0.55 | +2.2 |
4,055,672 | + | glnA | b3870 | 0.73 | +0.6 |
4,055,680 | - | +2.8 | |||
4,055,760 | - | glnA | b3870 | 0.79 | +1.4 |
4,055,766 | + | glnA | b3870 | 0.79 | +0.6 |
4,055,837 | + | glnA | b3870 | 0.84 | -0.4 |
4,055,842 | + | glnA | b3870 | 0.85 | +1.2 |
4,055,872 | + | glnA | b3870 | 0.87 | +0.2 |
4,055,880 | - | +0.4 | |||
4,055,880 | - | +0.8 | |||
4,056,067 | + | -1.4 | |||
4,056,075 | - | -1.5 | |||
4,056,204 | - | +0.8 | |||
4,056,258 | + | +0.1 | |||
4,056,334 | + | -2.1 | |||
4,056,397 | - | +2.5 | |||
4,056,414 | - | -0.1 | |||
4,056,414 | - | +0.9 | |||
4,056,468 | + | -1.2 | |||
4,056,483 | + | -0.5 | |||
4,056,483 | + | +0.8 | |||
4,056,541 | + | +0.5 | |||
4,056,541 | + | -1.4 | |||
4,056,655 | - | bipA | b3871 | 0.12 | -1.5 |
4,056,738 | - | bipA | b3871 | 0.17 | +1.3 |
4,056,781 | + | bipA | b3871 | 0.19 | -1.7 |
4,056,824 | + | bipA | b3871 | 0.22 | -2.8 |
4,056,855 | - | bipA | b3871 | 0.23 | -0.2 |
4,056,878 | + | bipA | b3871 | 0.25 | +0.0 |
4,056,923 | + | bipA | b3871 | 0.27 | +1.7 |
4,056,936 | - | bipA | b3871 | 0.28 | -1.9 |
4,056,954 | - | bipA | b3871 | 0.29 | -2.1 |
4,056,954 | - | bipA | b3871 | 0.29 | -2.2 |
4,056,979 | + | bipA | b3871 | 0.30 | -0.9 |
4,056,979 | + | bipA | b3871 | 0.30 | +0.3 |
4,056,980 | - | bipA | b3871 | 0.30 | -1.9 |
4,056,980 | - | bipA | b3871 | 0.30 | -0.5 |
4,056,990 | - | bipA | b3871 | 0.31 | -0.1 |
Or see this region's nucleotide sequence