Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lldD and yibK are separated by 197 nucleotides yibK and cysE are separated by 52 nucleotides cysE and gpsA are separated by 79 nucleotides
b3605: lldD - L-lactate dehydrogenase, FMN-linked (NCBI), at 3,777,850 to 3,779,040
lldD
b3606: yibK - predicted rRNA methylase (NCBI), at 3,779,238 to 3,779,711
yibK
b3607: cysE - serine acetyltransferase (NCBI), at 3,779,764 to 3,780,585
cysE
b3608: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI), at 3,780,665 to 3,781,684
gpsA
Position (kb)
3779
3780 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3778.255 kb on + strand, within lldD at 3778.267 kb on + strand, within lldD at 3778.267 kb on + strand, within lldD at 3778.303 kb on - strand, within lldD at 3778.330 kb on - strand, within lldD at 3778.336 kb on - strand, within lldD at 3778.338 kb on + strand, within lldD at 3778.338 kb on + strand, within lldD at 3778.339 kb on + strand, within lldD at 3778.346 kb on - strand, within lldD at 3778.360 kb on + strand, within lldD at 3778.360 kb on + strand, within lldD at 3778.360 kb on + strand, within lldD at 3778.360 kb on + strand, within lldD at 3778.362 kb on + strand, within lldD at 3778.362 kb on + strand, within lldD at 3778.362 kb on - strand, within lldD at 3778.386 kb on + strand, within lldD at 3778.397 kb on + strand, within lldD at 3778.397 kb on + strand, within lldD at 3778.412 kb on - strand, within lldD at 3778.412 kb on - strand, within lldD at 3778.547 kb on - strand, within lldD at 3778.686 kb on + strand, within lldD at 3778.698 kb on + strand, within lldD at 3778.698 kb on + strand, within lldD at 3778.704 kb on - strand, within lldD at 3778.709 kb on + strand, within lldD at 3778.717 kb on + strand, within lldD at 3778.747 kb on + strand, within lldD at 3778.784 kb on + strand, within lldD at 3778.799 kb on + strand, within lldD at 3778.814 kb on + strand, within lldD at 3778.825 kb on + strand, within lldD at 3778.828 kb on + strand, within lldD at 3778.884 kb on - strand, within lldD at 3778.890 kb on + strand, within lldD at 3778.935 kb on - strand at 3778.935 kb on - strand at 3778.995 kb on - strand at 3778.995 kb on - strand at 3779.010 kb on + strand at 3779.052 kb on + strand at 3779.052 kb on + strand at 3779.052 kb on + strand at 3779.052 kb on + strand at 3779.058 kb on + strand at 3779.058 kb on + strand at 3779.058 kb on + strand at 3779.060 kb on - strand at 3779.060 kb on - strand at 3779.065 kb on - strand at 3779.089 kb on + strand at 3779.089 kb on + strand at 3779.099 kb on + strand at 3779.107 kb on - strand at 3779.108 kb on + strand at 3779.154 kb on + strand at 3779.162 kb on - strand at 3779.179 kb on - strand at 3779.236 kb on + strand at 3779.239 kb on - strand at 3779.332 kb on - strand, within yibK at 3779.344 kb on + strand, within yibK at 3779.357 kb on - strand, within yibK at 3779.357 kb on - strand, within yibK at 3779.387 kb on - strand, within yibK at 3779.387 kb on - strand, within yibK at 3779.387 kb on - strand, within yibK at 3779.388 kb on - strand, within yibK at 3779.397 kb on - strand, within yibK at 3779.487 kb on + strand, within yibK at 3779.487 kb on + strand, within yibK at 3779.499 kb on + strand, within yibK at 3779.514 kb on - strand, within yibK at 3779.514 kb on - strand, within yibK at 3779.526 kb on - strand, within yibK at 3779.626 kb on + strand, within yibK at 3779.660 kb on + strand, within yibK at 3779.660 kb on - strand, within yibK at 3779.663 kb on - strand, within yibK at 3779.663 kb on - strand, within yibK at 3779.666 kb on + strand at 3779.668 kb on - strand at 3779.668 kb on - strand at 3779.704 kb on - strand at 3779.729 kb on + strand at 3779.739 kb on - strand at 3779.741 kb on - strand at 3780.590 kb on - strand at 3780.643 kb on - strand at 3780.643 kb on - strand at 3780.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 3,778,255 + lldD b3605 0.34 +0.8 3,778,267 + lldD b3605 0.35 -1.8 3,778,267 + lldD b3605 0.35 -2.3 3,778,303 - lldD b3605 0.38 +0.8 3,778,330 - lldD b3605 0.40 +1.0 3,778,336 - lldD b3605 0.41 -1.7 3,778,338 + lldD b3605 0.41 -0.9 3,778,338 + lldD b3605 0.41 +0.8 3,778,339 + lldD b3605 0.41 +2.1 3,778,346 - lldD b3605 0.42 +0.0 3,778,360 + lldD b3605 0.43 +2.0 3,778,360 + lldD b3605 0.43 -0.6 3,778,360 + lldD b3605 0.43 +0.1 3,778,360 + lldD b3605 0.43 +0.4 3,778,362 + lldD b3605 0.43 +0.1 3,778,362 + lldD b3605 0.43 -2.5 3,778,362 - lldD b3605 0.43 +2.7 3,778,386 + lldD b3605 0.45 +2.6 3,778,397 + lldD b3605 0.46 -2.1 3,778,397 + lldD b3605 0.46 -1.6 3,778,412 - lldD b3605 0.47 +1.4 3,778,412 - lldD b3605 0.47 -1.5 3,778,547 - lldD b3605 0.59 +0.1 3,778,686 + lldD b3605 0.70 +1.9 3,778,698 + lldD b3605 0.71 -0.5 3,778,698 + lldD b3605 0.71 +4.7 3,778,704 - lldD b3605 0.72 -1.0 3,778,709 + lldD b3605 0.72 +0.1 3,778,717 + lldD b3605 0.73 +0.2 3,778,747 + lldD b3605 0.75 -1.4 3,778,784 + lldD b3605 0.78 -1.4 3,778,799 + lldD b3605 0.80 +0.6 3,778,814 + lldD b3605 0.81 +1.3 3,778,825 + lldD b3605 0.82 -1.5 3,778,828 + lldD b3605 0.82 +0.1 3,778,884 - lldD b3605 0.87 +2.4 3,778,890 + lldD b3605 0.87 -0.6 3,778,935 - +0.2 3,778,935 - -0.5 3,778,995 - +0.9 3,778,995 - -1.8 3,779,010 + -0.9 3,779,052 + -2.8 3,779,052 + +1.2 3,779,052 + +1.3 3,779,052 + +0.2 3,779,058 + +2.0 3,779,058 + +1.5 3,779,058 + +2.2 3,779,060 - -2.8 3,779,060 - -1.0 3,779,065 - -2.2 3,779,089 + +1.3 3,779,089 + +1.4 3,779,099 + -2.1 3,779,107 - -0.7 3,779,108 + +1.0 3,779,154 + -1.0 3,779,162 - -2.0 3,779,179 - +1.2 3,779,236 + +2.2 3,779,239 - +0.9 3,779,332 - yibK b3606 0.20 +1.4 3,779,344 + yibK b3606 0.22 +1.2 3,779,357 - yibK b3606 0.25 +1.8 3,779,357 - yibK b3606 0.25 -1.4 3,779,387 - yibK b3606 0.31 +0.3 3,779,387 - yibK b3606 0.31 +4.2 3,779,387 - yibK b3606 0.31 -0.7 3,779,388 - yibK b3606 0.32 -1.5 3,779,397 - yibK b3606 0.34 +1.0 3,779,487 + yibK b3606 0.53 +2.2 3,779,487 + yibK b3606 0.53 +1.0 3,779,499 + yibK b3606 0.55 +3.1 3,779,514 - yibK b3606 0.58 -0.7 3,779,514 - yibK b3606 0.58 +2.0 3,779,526 - yibK b3606 0.61 +0.3 3,779,626 + yibK b3606 0.82 +2.0 3,779,660 + yibK b3606 0.89 -0.4 3,779,660 - yibK b3606 0.89 +0.3 3,779,663 - yibK b3606 0.90 +3.2 3,779,663 - yibK b3606 0.90 -2.9 3,779,666 + -2.6 3,779,668 - +0.1 3,779,668 - +2.7 3,779,704 - -3.3 3,779,729 + -1.2 3,779,739 - +0.7 3,779,741 - +1.1 3,780,590 - +0.4 3,780,643 - +1.1 3,780,643 - +0.5 3,780,666 - +0.5
Or see this region's nucleotide sequence