Strain Fitness in Escherichia coli BW25113 around b3362

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpabA and fic are separated by 31 nucleotidesfic and yhfG overlap by 11 nucleotidesyhfG and ppiA are separated by 104 nucleotidesppiA and tsgA are separated by 270 nucleotides b3360: pabA - para-aminobenzoate synthase component II (NCBI), at 3,488,288 to 3,488,851 pabA b3361: fic - stationary-phase protein, cell division (NCBI), at 3,488,883 to 3,489,485 fic b3362: yhfG - hypothetical protein (NCBI), at 3,489,475 to 3,489,642 yhfG b3363: ppiA - peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI), at 3,489,747 to 3,490,319 ppiA b3364: tsgA - hypothetical protein (NCBI), at 3,490,590 to 3,491,771 tsgA Position (kb) 3489 3490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3488.603 kb on - strand, within pabAat 3488.643 kb on + strand, within pabAat 3488.643 kb on + strand, within pabAat 3488.646 kb on - strand, within pabAat 3488.685 kb on + strand, within pabAat 3488.685 kb on + strand, within pabAat 3488.722 kb on + strand, within pabAat 3488.730 kb on - strand, within pabAat 3488.730 kb on - strand, within pabAat 3488.796 kb on - strandat 3488.796 kb on - strandat 3488.796 kb on - strandat 3488.835 kb on + strandat 3488.888 kb on - strandat 3488.923 kb on + strandat 3488.923 kb on + strandat 3488.943 kb on - strandat 3488.949 kb on + strand, within ficat 3488.953 kb on - strand, within ficat 3488.961 kb on - strand, within ficat 3489.045 kb on + strand, within ficat 3489.079 kb on - strand, within ficat 3489.150 kb on - strand, within ficat 3489.278 kb on - strand, within ficat 3489.278 kb on - strand, within ficat 3489.341 kb on + strand, within ficat 3489.341 kb on + strandat 3489.341 kb on + strand, within ficat 3489.343 kb on - strand, within ficat 3489.427 kb on - strandat 3489.427 kb on - strandat 3489.435 kb on - strandat 3489.439 kb on - strandat 3489.499 kb on - strand, within yhfGat 3489.506 kb on - strand, within yhfGat 3489.506 kb on - strand, within yhfGat 3489.511 kb on + strand, within yhfGat 3489.511 kb on + strand, within yhfGat 3489.520 kb on - strand, within yhfGat 3489.520 kb on - strand, within yhfGat 3489.536 kb on - strand, within yhfGat 3489.536 kb on - strand, within yhfGat 3489.538 kb on + strand, within yhfGat 3489.552 kb on - strand, within yhfGat 3489.659 kb on + strandat 3489.659 kb on - strandat 3489.676 kb on + strandat 3489.700 kb on + strandat 3489.700 kb on + strandat 3489.743 kb on - strandat 3489.743 kb on - strandat 3489.753 kb on - strandat 3489.753 kb on - strandat 3489.804 kb on - strandat 3489.804 kb on - strandat 3489.804 kb on - strandat 3489.804 kb on - strandat 3489.806 kb on + strand, within ppiAat 3489.806 kb on + strand, within ppiAat 3489.820 kb on - strand, within ppiAat 3489.820 kb on - strand, within ppiAat 3489.849 kb on + strand, within ppiAat 3489.849 kb on + strand, within ppiAat 3489.849 kb on + strand, within ppiAat 3489.857 kb on - strand, within ppiAat 3489.866 kb on - strand, within ppiAat 3489.866 kb on - strand, within ppiAat 3489.878 kb on - strand, within ppiAat 3489.878 kb on - strand, within ppiAat 3489.905 kb on + strand, within ppiAat 3489.905 kb on + strand, within ppiAat 3489.914 kb on - strand, within ppiAat 3489.916 kb on - strand, within ppiAat 3489.916 kb on - strand, within ppiAat 3489.967 kb on - strand, within ppiAat 3489.967 kb on - strand, within ppiAat 3489.989 kb on + strand, within ppiAat 3489.997 kb on - strand, within ppiAat 3489.997 kb on - strand, within ppiAat 3490.055 kb on + strand, within ppiAat 3490.115 kb on - strand, within ppiAat 3490.120 kb on + strand, within ppiAat 3490.120 kb on + strand, within ppiAat 3490.188 kb on - strand, within ppiAat 3490.201 kb on + strand, within ppiAat 3490.226 kb on - strand, within ppiAat 3490.261 kb on + strand, within ppiAat 3490.267 kb on + strandat 3490.267 kb on + strandat 3490.269 kb on + strandat 3490.348 kb on + strandat 3490.348 kb on + strandat 3490.355 kb on + strandat 3490.367 kb on + strandat 3490.367 kb on + strandat 3490.377 kb on + strandat 3490.428 kb on - strandat 3490.555 kb on - strandat 3490.555 kb on - strandat 3490.590 kb on - strandat 3490.590 kb on - strandat 3490.598 kb on + strandat 3490.607 kb on + strandat 3490.607 kb on + strandat 3490.634 kb on + strandat 3490.636 kb on + strandat 3490.636 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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3,488,603 - pabA b3360 0.56 -0.3
3,488,643 + pabA b3360 0.63 -2.1
3,488,643 + pabA b3360 0.63 +1.6
3,488,646 - pabA b3360 0.63 +0.6
3,488,685 + pabA b3360 0.70 -0.4
3,488,685 + pabA b3360 0.70 -2.6
3,488,722 + pabA b3360 0.77 -0.1
3,488,730 - pabA b3360 0.78 +1.3
3,488,730 - pabA b3360 0.78 +2.9
3,488,796 - -0.8
3,488,796 - -1.4
3,488,796 - +0.7
3,488,835 + +0.5
3,488,888 - -2.1
3,488,923 + +4.4
3,488,923 + +2.7
3,488,943 - +1.2
3,488,949 + fic b3361 0.11 -1.5
3,488,953 - fic b3361 0.12 -2.1
3,488,961 - fic b3361 0.13 -0.3
3,489,045 + fic b3361 0.27 +0.1
3,489,079 - fic b3361 0.33 -1.9
3,489,150 - fic b3361 0.44 +0.1
3,489,278 - fic b3361 0.66 -2.7
3,489,278 - fic b3361 0.66 -0.5
3,489,341 + fic b3361 0.76 +2.3
3,489,341 + +0.9
3,489,341 + fic b3361 0.76 +1.9
3,489,343 - fic b3361 0.76 -0.1
3,489,427 - +2.0
3,489,427 - +0.6
3,489,435 - -0.3
3,489,439 - +0.4
3,489,499 - yhfG b3362 0.14 +2.3
3,489,506 - yhfG b3362 0.18 -2.2
3,489,506 - yhfG b3362 0.18 +2.6
3,489,511 + yhfG b3362 0.21 +1.1
3,489,511 + yhfG b3362 0.21 +1.4
3,489,520 - yhfG b3362 0.27 +1.4
3,489,520 - yhfG b3362 0.27 +1.7
3,489,536 - yhfG b3362 0.36 +1.3
3,489,536 - yhfG b3362 0.36 +0.5
3,489,538 + yhfG b3362 0.38 -0.6
3,489,552 - yhfG b3362 0.46 -1.6
3,489,659 + -2.2
3,489,659 - +1.1
3,489,676 + -2.4
3,489,700 + -1.3
3,489,700 + -0.2
3,489,743 - -2.6
3,489,743 - -1.1
3,489,753 - -2.3
3,489,753 - +0.4
3,489,804 - -1.1
3,489,804 - -1.4
3,489,804 - -2.1
3,489,804 - +0.5
3,489,806 + ppiA b3363 0.10 -2.2
3,489,806 + ppiA b3363 0.10 -2.5
3,489,820 - ppiA b3363 0.13 -0.9
3,489,820 - ppiA b3363 0.13 -1.3
3,489,849 + ppiA b3363 0.18 -2.5
3,489,849 + ppiA b3363 0.18 -2.5
3,489,849 + ppiA b3363 0.18 -1.9
3,489,857 - ppiA b3363 0.19 -1.8
3,489,866 - ppiA b3363 0.21 -2.8
3,489,866 - ppiA b3363 0.21 -2.4
3,489,878 - ppiA b3363 0.23 -1.5
3,489,878 - ppiA b3363 0.23 -1.8
3,489,905 + ppiA b3363 0.28 -2.1
3,489,905 + ppiA b3363 0.28 -2.0
3,489,914 - ppiA b3363 0.29 +0.3
3,489,916 - ppiA b3363 0.29 -1.8
3,489,916 - ppiA b3363 0.29 -1.3
3,489,967 - ppiA b3363 0.38 -1.2
3,489,967 - ppiA b3363 0.38 -2.4
3,489,989 + ppiA b3363 0.42 -0.1
3,489,997 - ppiA b3363 0.44 -3.2
3,489,997 - ppiA b3363 0.44 -2.4
3,490,055 + ppiA b3363 0.54 +0.1
3,490,115 - ppiA b3363 0.64 -3.0
3,490,120 + ppiA b3363 0.65 +0.2
3,490,120 + ppiA b3363 0.65 -1.0
3,490,188 - ppiA b3363 0.77 -3.6
3,490,201 + ppiA b3363 0.79 -1.2
3,490,226 - ppiA b3363 0.84 -1.7
3,490,261 + ppiA b3363 0.90 -2.6
3,490,267 + -0.4
3,490,267 + -2.5
3,490,269 + +0.9
3,490,348 + +0.8
3,490,348 + -1.0
3,490,355 + -3.7
3,490,367 + -0.4
3,490,367 + -1.9
3,490,377 + -1.9
3,490,428 - +0.5
3,490,555 - -0.9
3,490,555 - +0.8
3,490,590 - +1.4
3,490,590 - -1.4
3,490,598 + +1.7
3,490,607 + +0.9
3,490,607 + -1.3
3,490,634 + +0.8
3,490,636 + -0.8
3,490,636 + -0.5

Or see this region's nucleotide sequence