Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exuR and yqjA are separated by 344 nucleotides yqjA and yqjB are separated by 3 nucleotides yqjB and yqjC are separated by 146 nucleotides yqjC and yqjD are separated by 37 nucleotides
b3094: exuR - negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS), at 3,244,674 to 3,245,450
exuR
b3095: yqjA - conserved inner membrane protein (NCBI), at 3,245,795 to 3,246,457
yqjA
b3096: yqjB - hypothetical protein (NCBI), at 3,246,461 to 3,246,844
yqjB
b3097: yqjC - orf, hypothetical protein (VIMSS), at 3,246,991 to 3,247,359
yqjC
b3098: yqjD - hypothetical protein (NCBI), at 3,247,397 to 3,247,702
yqjD
Position (kb)
3245
3246
3247 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3244.860 kb on - strand, within exuR at 3245.058 kb on - strand, within exuR at 3245.058 kb on - strand, within exuR at 3245.086 kb on - strand, within exuR at 3245.086 kb on - strand, within exuR at 3245.098 kb on - strand, within exuR at 3245.168 kb on + strand, within exuR at 3245.168 kb on + strand, within exuR at 3245.183 kb on - strand, within exuR at 3245.200 kb on + strand, within exuR at 3245.217 kb on - strand, within exuR at 3245.299 kb on + strand, within exuR at 3245.299 kb on + strand, within exuR at 3245.376 kb on - strand at 3245.415 kb on + strand at 3245.420 kb on + strand at 3245.512 kb on + strand at 3245.514 kb on + strand at 3245.522 kb on - strand at 3245.532 kb on - strand at 3245.536 kb on + strand at 3245.536 kb on + strand at 3245.546 kb on + strand at 3245.546 kb on + strand at 3245.554 kb on - strand at 3245.554 kb on - strand at 3245.556 kb on - strand at 3245.607 kb on + strand at 3245.651 kb on + strand at 3245.676 kb on + strand at 3245.678 kb on + strand at 3245.679 kb on - strand at 3245.684 kb on - strand at 3245.684 kb on - strand at 3245.684 kb on - strand at 3245.690 kb on - strand at 3245.695 kb on + strand at 3245.712 kb on - strand at 3245.726 kb on + strand at 3245.856 kb on + strand at 3245.914 kb on - strand, within yqjA at 3245.923 kb on - strand, within yqjA at 3245.950 kb on - strand, within yqjA at 3246.000 kb on - strand, within yqjA at 3246.005 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.059 kb on - strand, within yqjA at 3246.070 kb on + strand, within yqjA at 3246.082 kb on - strand, within yqjA at 3246.082 kb on - strand, within yqjA at 3246.097 kb on - strand, within yqjA at 3246.097 kb on - strand, within yqjA at 3246.128 kb on - strand, within yqjA at 3246.128 kb on - strand, within yqjA at 3246.159 kb on + strand, within yqjA at 3246.159 kb on + strand, within yqjA at 3246.196 kb on + strand, within yqjA at 3246.204 kb on - strand, within yqjA at 3246.233 kb on + strand, within yqjA at 3246.233 kb on + strand, within yqjA at 3246.280 kb on + strand, within yqjA at 3246.286 kb on + strand, within yqjA at 3246.288 kb on - strand, within yqjA at 3246.288 kb on - strand, within yqjA at 3246.310 kb on - strand, within yqjA at 3246.464 kb on + strand at 3246.464 kb on + strand at 3246.470 kb on + strand at 3246.489 kb on + strand at 3246.493 kb on + strand at 3246.493 kb on + strand at 3246.509 kb on + strand, within yqjB at 3246.538 kb on - strand, within yqjB at 3246.587 kb on + strand, within yqjB at 3246.587 kb on + strand, within yqjB at 3246.603 kb on - strand, within yqjB at 3246.649 kb on - strand, within yqjB at 3246.681 kb on + strand, within yqjB at 3246.751 kb on + strand, within yqjB at 3246.760 kb on + strand, within yqjB at 3246.760 kb on + strand, within yqjB at 3246.766 kb on - strand, within yqjB at 3246.781 kb on + strand, within yqjB at 3246.781 kb on + strand, within yqjB at 3246.789 kb on - strand, within yqjB at 3246.799 kb on + strand, within yqjB at 3246.834 kb on + strand at 3246.834 kb on + strand at 3246.873 kb on - strand at 3246.873 kb on - strand at 3246.937 kb on + strand at 3246.961 kb on - strand at 3246.961 kb on - strand at 3247.049 kb on + strand, within yqjC at 3247.054 kb on + strand, within yqjC at 3247.057 kb on - strand, within yqjC at 3247.057 kb on - strand, within yqjC at 3247.063 kb on + strand, within yqjC at 3247.067 kb on - strand, within yqjC at 3247.140 kb on + strand, within yqjC at 3247.140 kb on + strand, within yqjC at 3247.170 kb on + strand, within yqjC at 3247.177 kb on - strand, within yqjC at 3247.257 kb on - strand, within yqjC at 3247.257 kb on - strand, within yqjC at 3247.377 kb on - strand at 3247.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanol 0.08 vol% remove 3,244,860 - exuR b3094 0.24 -2.5 3,245,058 - exuR b3094 0.49 -0.3 3,245,058 - exuR b3094 0.49 -2.2 3,245,086 - exuR b3094 0.53 +1.5 3,245,086 - exuR b3094 0.53 +3.8 3,245,098 - exuR b3094 0.55 +2.2 3,245,168 + exuR b3094 0.64 -0.1 3,245,168 + exuR b3094 0.64 -1.7 3,245,183 - exuR b3094 0.66 +1.5 3,245,200 + exuR b3094 0.68 -2.3 3,245,217 - exuR b3094 0.70 -1.6 3,245,299 + exuR b3094 0.80 +0.2 3,245,299 + exuR b3094 0.80 +1.2 3,245,376 - +1.2 3,245,415 + +1.3 3,245,420 + -1.2 3,245,512 + -2.1 3,245,514 + -1.7 3,245,522 - -2.3 3,245,532 - +1.8 3,245,536 + -2.8 3,245,536 + -0.0 3,245,546 + +0.1 3,245,546 + -3.7 3,245,554 - +2.4 3,245,554 - +1.1 3,245,556 - +2.7 3,245,607 + -2.1 3,245,651 + -2.1 3,245,676 + -2.1 3,245,678 + -2.5 3,245,679 - -1.4 3,245,684 - +1.4 3,245,684 - -2.3 3,245,684 - +1.0 3,245,690 - +0.8 3,245,695 + +0.1 3,245,712 - +4.0 3,245,726 + +1.0 3,245,856 + +0.0 3,245,914 - yqjA b3095 0.18 -1.7 3,245,923 - yqjA b3095 0.19 +2.5 3,245,950 - yqjA b3095 0.23 +2.5 3,246,000 - yqjA b3095 0.31 +3.5 3,246,005 - yqjA b3095 0.32 +4.2 3,246,059 - yqjA b3095 0.40 -3.4 3,246,059 - yqjA b3095 0.40 +1.4 3,246,059 - yqjA b3095 0.40 +3.6 3,246,059 - yqjA b3095 0.40 +2.7 3,246,070 + yqjA b3095 0.41 +3.2 3,246,082 - yqjA b3095 0.43 +2.4 3,246,082 - yqjA b3095 0.43 +4.4 3,246,097 - yqjA b3095 0.46 +4.9 3,246,097 - yqjA b3095 0.46 +4.2 3,246,128 - yqjA b3095 0.50 +3.1 3,246,128 - yqjA b3095 0.50 +1.6 3,246,159 + yqjA b3095 0.55 +2.1 3,246,159 + yqjA b3095 0.55 -1.8 3,246,196 + yqjA b3095 0.60 +2.6 3,246,204 - yqjA b3095 0.62 +2.7 3,246,233 + yqjA b3095 0.66 +0.4 3,246,233 + yqjA b3095 0.66 +2.3 3,246,280 + yqjA b3095 0.73 +1.1 3,246,286 + yqjA b3095 0.74 -1.0 3,246,288 - yqjA b3095 0.74 +3.1 3,246,288 - yqjA b3095 0.74 -1.8 3,246,310 - yqjA b3095 0.78 +2.5 3,246,464 + -1.1 3,246,464 + -0.3 3,246,470 + +0.5 3,246,489 + +2.7 3,246,493 + -2.0 3,246,493 + -0.9 3,246,509 + yqjB b3096 0.12 +0.4 3,246,538 - yqjB b3096 0.20 +2.2 3,246,587 + yqjB b3096 0.33 +2.6 3,246,587 + yqjB b3096 0.33 -1.8 3,246,603 - yqjB b3096 0.37 -2.9 3,246,649 - yqjB b3096 0.49 -1.5 3,246,681 + yqjB b3096 0.57 -0.8 3,246,751 + yqjB b3096 0.76 +0.6 3,246,760 + yqjB b3096 0.78 +1.4 3,246,760 + yqjB b3096 0.78 +0.2 3,246,766 - yqjB b3096 0.79 -2.5 3,246,781 + yqjB b3096 0.83 -0.2 3,246,781 + yqjB b3096 0.83 -0.3 3,246,789 - yqjB b3096 0.85 +0.7 3,246,799 + yqjB b3096 0.88 -0.1 3,246,834 + +1.3 3,246,834 + +2.1 3,246,873 - -1.5 3,246,873 - -0.3 3,246,937 + +0.1 3,246,961 - +2.8 3,246,961 - +1.1 3,247,049 + yqjC b3097 0.16 +2.5 3,247,054 + yqjC b3097 0.17 +2.2 3,247,057 - yqjC b3097 0.18 +0.6 3,247,057 - yqjC b3097 0.18 +1.3 3,247,063 + yqjC b3097 0.20 +3.0 3,247,067 - yqjC b3097 0.21 -1.5 3,247,140 + yqjC b3097 0.40 -2.0 3,247,140 + yqjC b3097 0.40 -0.6 3,247,170 + yqjC b3097 0.49 -1.1 3,247,177 - yqjC b3097 0.50 +2.1 3,247,257 - yqjC b3097 0.72 -1.4 3,247,257 - yqjC b3097 0.72 +0.2 3,247,377 - -0.4 3,247,382 + +0.7
Or see this region's nucleotide sequence