Strain Fitness in Escherichia coli BW25113 around b2981

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglcC and yghO are separated by 6 nucleotidesyghO and insH-9 are separated by 34 nucleotides b2980: glcC - DNA-binding transcriptional dual regulator, glycolate-binding (NCBI), at 3,126,294 to 3,127,058 glcC b2981: yghO - predicted DNA-binding transcriptional regulator (RefSeq), at 3,127,065 to 3,128,165 yghO b2982: insH-9 - IS5 transposase and trans-activator (NCBI), at 3,128,200 to 3,129,216 insH-9 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -2 -1 0 1 2at 3126.066 kb on - strandat 3126.280 kb on - strandat 3126.282 kb on - strandat 3126.282 kb on - strandat 3126.345 kb on - strandat 3126.396 kb on - strand, within glcCat 3126.427 kb on + strand, within glcCat 3126.510 kb on + strand, within glcCat 3126.598 kb on + strand, within glcCat 3126.626 kb on + strand, within glcCat 3126.740 kb on - strand, within glcCat 3126.753 kb on - strand, within glcCat 3126.865 kb on - strand, within glcCat 3126.889 kb on + strand, within glcCat 3126.926 kb on - strand, within glcCat 3127.086 kb on - strandat 3127.101 kb on - strandat 3127.148 kb on - strandat 3127.169 kb on - strandat 3127.169 kb on - strandat 3127.234 kb on - strand, within yghOat 3127.274 kb on - strand, within yghOat 3127.274 kb on - strand, within yghOat 3127.435 kb on + strand, within yghOat 3127.566 kb on + strand, within yghOat 3127.566 kb on + strand, within yghOat 3127.607 kb on + strand, within yghOat 3127.697 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.764 kb on + strand, within yghOat 3127.772 kb on - strand, within yghOat 3127.846 kb on - strand, within yghOat 3127.909 kb on - strand, within yghOat 3127.909 kb on - strand, within yghOat 3127.966 kb on + strand, within yghOat 3128.034 kb on + strand, within yghOat 3128.034 kb on + strand, within yghOat 3128.034 kb on + strand, within yghO

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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3,126,066 - -1.0
3,126,280 - -2.6
3,126,282 - -2.1
3,126,282 - +0.6
3,126,345 - -2.2
3,126,396 - glcC b2980 0.13 +1.9
3,126,427 + glcC b2980 0.17 -1.7
3,126,510 + glcC b2980 0.28 +1.4
3,126,598 + glcC b2980 0.40 +1.6
3,126,626 + glcC b2980 0.43 -0.8
3,126,740 - glcC b2980 0.58 -0.3
3,126,753 - glcC b2980 0.60 +1.5
3,126,865 - glcC b2980 0.75 -0.8
3,126,889 + glcC b2980 0.78 +0.1
3,126,926 - glcC b2980 0.83 +1.3
3,127,086 - +1.3
3,127,101 - +0.8
3,127,148 - -0.6
3,127,169 - -2.5
3,127,169 - +1.4
3,127,234 - yghO b2981 0.15 -0.4
3,127,274 - yghO b2981 0.19 +2.5
3,127,274 - yghO b2981 0.19 -1.9
3,127,435 + yghO b2981 0.34 +2.4
3,127,566 + yghO b2981 0.46 +2.1
3,127,566 + yghO b2981 0.46 +2.1
3,127,607 + yghO b2981 0.49 +0.5
3,127,697 - yghO b2981 0.57 -1.3
3,127,762 - yghO b2981 0.63 -0.9
3,127,762 - yghO b2981 0.63 +0.5
3,127,762 - yghO b2981 0.63 -0.8
3,127,764 + yghO b2981 0.63 +1.6
3,127,772 - yghO b2981 0.64 +0.8
3,127,846 - yghO b2981 0.71 +1.2
3,127,909 - yghO b2981 0.77 +0.3
3,127,909 - yghO b2981 0.77 -2.0
3,127,966 + yghO b2981 0.82 -2.3
3,128,034 + yghO b2981 0.88 +2.7
3,128,034 + yghO b2981 0.88 +1.8
3,128,034 + yghO b2981 0.88 +1.3

Or see this region's nucleotide sequence