Strain Fitness in Escherichia coli BW25113 around b2807
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,938,353 | - | ygdE | b2806 | 0.17 | +1.2 |
2,938,353 | - | ygdE | b2806 | 0.17 | +2.4 |
2,938,398 | - | ygdE | b2806 | 0.21 | -2.9 |
2,938,443 | + | ygdE | b2806 | 0.25 | -0.6 |
2,938,443 | - | ygdE | b2806 | 0.25 | +0.0 |
2,938,553 | + | ygdE | b2806 | 0.35 | -2.9 |
2,938,561 | - | ygdE | b2806 | 0.36 | -0.7 |
2,938,561 | - | ygdE | b2806 | 0.36 | +0.6 |
2,938,587 | + | ygdE | b2806 | 0.38 | +3.0 |
2,938,610 | + | ygdE | b2806 | 0.40 | +0.7 |
2,938,698 | + | ygdE | b2806 | 0.48 | +0.8 |
2,938,711 | - | ygdE | b2806 | 0.50 | -1.3 |
2,938,711 | - | ygdE | b2806 | 0.50 | +1.3 |
2,938,750 | - | ygdE | b2806 | 0.53 | +1.4 |
2,938,758 | + | ygdE | b2806 | 0.54 | -0.7 |
2,938,780 | - | ygdE | b2806 | 0.56 | +0.5 |
2,938,780 | - | ygdE | b2806 | 0.56 | -2.6 |
2,938,795 | - | ygdE | b2806 | 0.57 | -1.7 |
2,938,795 | - | ygdE | b2806 | 0.57 | -2.2 |
2,938,810 | + | ygdE | b2806 | 0.59 | +1.3 |
2,938,810 | + | ygdE | b2806 | 0.59 | -1.0 |
2,938,868 | - | ygdE | b2806 | 0.64 | -1.8 |
2,938,883 | - | ygdE | b2806 | 0.65 | -3.2 |
2,938,969 | + | ygdE | b2806 | 0.73 | -0.6 |
2,938,974 | + | ygdE | b2806 | 0.73 | -0.5 |
2,938,974 | + | ygdE | b2806 | 0.73 | -2.3 |
2,938,986 | + | ygdE | b2806 | 0.75 | +0.6 |
2,939,038 | - | ygdE | b2806 | 0.79 | -0.4 |
2,939,298 | - | ygdD | b2807 | 0.10 | -0.6 |
2,939,347 | + | ygdD | b2807 | 0.22 | +0.7 |
2,939,405 | + | ygdD | b2807 | 0.37 | +0.6 |
2,939,442 | - | ygdD | b2807 | 0.46 | -1.1 |
2,939,465 | - | ygdD | b2807 | 0.52 | -1.0 |
2,939,470 | + | ygdD | b2807 | 0.54 | -2.8 |
2,939,470 | + | ygdD | b2807 | 0.54 | -1.5 |
2,939,545 | + | ygdD | b2807 | 0.72 | -1.0 |
2,939,553 | - | ygdD | b2807 | 0.74 | -2.7 |
2,939,648 | + | -3.8 | |||
2,939,648 | + | +1.5 | |||
2,939,655 | + | -0.6 | |||
2,939,663 | - | -0.4 | |||
2,939,663 | - | -2.1 | |||
2,939,778 | - | gcvA | b2808 | 0.12 | -3.1 |
2,939,778 | - | gcvA | b2808 | 0.12 | -3.6 |
2,939,804 | + | gcvA | b2808 | 0.14 | -1.2 |
2,939,912 | - | gcvA | b2808 | 0.26 | -2.6 |
2,939,914 | - | gcvA | b2808 | 0.26 | -2.0 |
2,939,982 | - | gcvA | b2808 | 0.34 | -1.0 |
2,939,982 | - | gcvA | b2808 | 0.34 | -2.6 |
2,939,985 | - | gcvA | b2808 | 0.34 | -2.6 |
2,939,987 | - | gcvA | b2808 | 0.34 | -1.9 |
2,940,001 | + | gcvA | b2808 | 0.36 | -2.4 |
2,940,068 | + | gcvA | b2808 | 0.43 | -3.0 |
2,940,171 | - | gcvA | b2808 | 0.54 | -0.9 |
2,940,171 | - | gcvA | b2808 | 0.54 | -0.1 |
2,940,289 | + | gcvA | b2808 | 0.67 | -4.7 |
2,940,331 | + | gcvA | b2808 | 0.72 | -2.8 |
2,940,399 | - | gcvA | b2808 | 0.79 | -2.3 |
2,940,417 | - | gcvA | b2808 | 0.81 | -2.3 |
2,940,477 | - | gcvA | b2808 | 0.88 | -2.2 |
2,940,522 | + | -2.5 | |||
2,940,587 | - | -3.4 |
Or see this region's nucleotide sequence