Strain Fitness in Escherichia coli BW25113 around b2807

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygdE and ygdD overlap by 8 nucleotidesygdD and gcvA are separated by 18 nucleotides b2806: ygdE - predicted methyltransferase (NCBI), at 2,938,165 to 2,939,265 ygdE b2807: ygdD - conserved inner membrane protein (NCBI), at 2,939,258 to 2,939,653 ygdD b2808: gcvA - DNA-binding transcriptional dual regulator (NCBI), at 2,939,672 to 2,940,589 gcvA Position (kb) 2939 2940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2938.353 kb on - strand, within ygdEat 2938.353 kb on - strand, within ygdEat 2938.398 kb on - strand, within ygdEat 2938.443 kb on + strand, within ygdEat 2938.443 kb on - strand, within ygdEat 2938.553 kb on + strand, within ygdEat 2938.561 kb on - strand, within ygdEat 2938.561 kb on - strand, within ygdEat 2938.587 kb on + strand, within ygdEat 2938.610 kb on + strand, within ygdEat 2938.698 kb on + strand, within ygdEat 2938.711 kb on - strand, within ygdEat 2938.711 kb on - strand, within ygdEat 2938.750 kb on - strand, within ygdEat 2938.758 kb on + strand, within ygdEat 2938.780 kb on - strand, within ygdEat 2938.780 kb on - strand, within ygdEat 2938.795 kb on - strand, within ygdEat 2938.795 kb on - strand, within ygdEat 2938.810 kb on + strand, within ygdEat 2938.810 kb on + strand, within ygdEat 2938.868 kb on - strand, within ygdEat 2938.883 kb on - strand, within ygdEat 2938.969 kb on + strand, within ygdEat 2938.974 kb on + strand, within ygdEat 2938.974 kb on + strand, within ygdEat 2938.986 kb on + strand, within ygdEat 2939.038 kb on - strand, within ygdEat 2939.298 kb on - strand, within ygdDat 2939.347 kb on + strand, within ygdDat 2939.405 kb on + strand, within ygdDat 2939.442 kb on - strand, within ygdDat 2939.465 kb on - strand, within ygdDat 2939.470 kb on + strand, within ygdDat 2939.470 kb on + strand, within ygdDat 2939.545 kb on + strand, within ygdDat 2939.553 kb on - strand, within ygdDat 2939.648 kb on + strandat 2939.648 kb on + strandat 2939.655 kb on + strandat 2939.663 kb on - strandat 2939.663 kb on - strandat 2939.778 kb on - strand, within gcvAat 2939.778 kb on - strand, within gcvAat 2939.804 kb on + strand, within gcvAat 2939.912 kb on - strand, within gcvAat 2939.914 kb on - strand, within gcvAat 2939.982 kb on - strand, within gcvAat 2939.982 kb on - strand, within gcvAat 2939.985 kb on - strand, within gcvAat 2939.987 kb on - strand, within gcvAat 2940.001 kb on + strand, within gcvAat 2940.068 kb on + strand, within gcvAat 2940.171 kb on - strand, within gcvAat 2940.171 kb on - strand, within gcvAat 2940.289 kb on + strand, within gcvAat 2940.331 kb on + strand, within gcvAat 2940.399 kb on - strand, within gcvAat 2940.417 kb on - strand, within gcvAat 2940.477 kb on - strand, within gcvAat 2940.522 kb on + strandat 2940.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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2,938,353 - ygdE b2806 0.17 +1.2
2,938,353 - ygdE b2806 0.17 +2.4
2,938,398 - ygdE b2806 0.21 -2.9
2,938,443 + ygdE b2806 0.25 -0.6
2,938,443 - ygdE b2806 0.25 +0.0
2,938,553 + ygdE b2806 0.35 -2.9
2,938,561 - ygdE b2806 0.36 -0.7
2,938,561 - ygdE b2806 0.36 +0.6
2,938,587 + ygdE b2806 0.38 +3.0
2,938,610 + ygdE b2806 0.40 +0.7
2,938,698 + ygdE b2806 0.48 +0.8
2,938,711 - ygdE b2806 0.50 -1.3
2,938,711 - ygdE b2806 0.50 +1.3
2,938,750 - ygdE b2806 0.53 +1.4
2,938,758 + ygdE b2806 0.54 -0.7
2,938,780 - ygdE b2806 0.56 +0.5
2,938,780 - ygdE b2806 0.56 -2.6
2,938,795 - ygdE b2806 0.57 -1.7
2,938,795 - ygdE b2806 0.57 -2.2
2,938,810 + ygdE b2806 0.59 +1.3
2,938,810 + ygdE b2806 0.59 -1.0
2,938,868 - ygdE b2806 0.64 -1.8
2,938,883 - ygdE b2806 0.65 -3.2
2,938,969 + ygdE b2806 0.73 -0.6
2,938,974 + ygdE b2806 0.73 -0.5
2,938,974 + ygdE b2806 0.73 -2.3
2,938,986 + ygdE b2806 0.75 +0.6
2,939,038 - ygdE b2806 0.79 -0.4
2,939,298 - ygdD b2807 0.10 -0.6
2,939,347 + ygdD b2807 0.22 +0.7
2,939,405 + ygdD b2807 0.37 +0.6
2,939,442 - ygdD b2807 0.46 -1.1
2,939,465 - ygdD b2807 0.52 -1.0
2,939,470 + ygdD b2807 0.54 -2.8
2,939,470 + ygdD b2807 0.54 -1.5
2,939,545 + ygdD b2807 0.72 -1.0
2,939,553 - ygdD b2807 0.74 -2.7
2,939,648 + -3.8
2,939,648 + +1.5
2,939,655 + -0.6
2,939,663 - -0.4
2,939,663 - -2.1
2,939,778 - gcvA b2808 0.12 -3.1
2,939,778 - gcvA b2808 0.12 -3.6
2,939,804 + gcvA b2808 0.14 -1.2
2,939,912 - gcvA b2808 0.26 -2.6
2,939,914 - gcvA b2808 0.26 -2.0
2,939,982 - gcvA b2808 0.34 -1.0
2,939,982 - gcvA b2808 0.34 -2.6
2,939,985 - gcvA b2808 0.34 -2.6
2,939,987 - gcvA b2808 0.34 -1.9
2,940,001 + gcvA b2808 0.36 -2.4
2,940,068 + gcvA b2808 0.43 -3.0
2,940,171 - gcvA b2808 0.54 -0.9
2,940,171 - gcvA b2808 0.54 -0.1
2,940,289 + gcvA b2808 0.67 -4.7
2,940,331 + gcvA b2808 0.72 -2.8
2,940,399 - gcvA b2808 0.79 -2.3
2,940,417 - gcvA b2808 0.81 -2.3
2,940,477 - gcvA b2808 0.88 -2.2
2,940,522 + -2.5
2,940,587 - -3.4

Or see this region's nucleotide sequence