Strain Fitness in Escherichia coli BW25113 around b2803

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucI and fucK are separated by 78 nucleotidesfucK and fucU are separated by 1 nucleotidesfucU and fucR are separated by 57 nucleotides b2802: fucI - L-fucose isomerase (NCBI), at 2,933,606 to 2,935,381 fucI b2803: fucK - L-fuculokinase (NCBI), at 2,935,460 to 2,936,908 fucK b2804: fucU - L-fucose mutarotase (NCBI), at 2,936,910 to 2,937,332 fucU b2805: fucR - DNA-binding transcriptional activator (NCBI), at 2,937,390 to 2,938,121 fucR Position (kb) 2935 2936 2937Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2934.514 kb on + strand, within fucIat 2934.522 kb on - strand, within fucIat 2934.533 kb on - strand, within fucIat 2934.536 kb on + strand, within fucIat 2934.536 kb on + strand, within fucIat 2934.546 kb on - strand, within fucIat 2934.546 kb on - strand, within fucIat 2934.554 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.622 kb on - strand, within fucIat 2934.643 kb on + strand, within fucIat 2934.671 kb on + strand, within fucIat 2934.692 kb on + strand, within fucIat 2934.762 kb on + strand, within fucIat 2935.022 kb on - strand, within fucIat 2935.044 kb on - strand, within fucIat 2935.101 kb on + strand, within fucIat 2935.126 kb on - strand, within fucIat 2935.153 kb on + strand, within fucIat 2935.156 kb on + strand, within fucIat 2935.156 kb on + strand, within fucIat 2935.186 kb on + strand, within fucIat 2935.186 kb on + strand, within fucIat 2935.236 kb on + strandat 2935.236 kb on + strandat 2935.300 kb on + strandat 2935.321 kb on + strandat 2935.378 kb on + strandat 2935.398 kb on - strandat 2935.432 kb on - strandat 2935.433 kb on + strandat 2935.504 kb on - strandat 2935.504 kb on - strandat 2935.518 kb on + strandat 2935.589 kb on - strandat 2935.686 kb on + strand, within fucKat 2935.817 kb on + strand, within fucKat 2935.929 kb on + strand, within fucKat 2935.929 kb on + strand, within fucKat 2936.145 kb on - strand, within fucKat 2936.230 kb on + strand, within fucKat 2936.304 kb on + strand, within fucKat 2936.330 kb on + strand, within fucKat 2936.330 kb on + strand, within fucKat 2936.382 kb on - strand, within fucKat 2936.382 kb on - strand, within fucKat 2936.392 kb on - strand, within fucKat 2936.441 kb on + strand, within fucKat 2936.538 kb on + strand, within fucKat 2936.538 kb on + strand, within fucKat 2936.628 kb on + strand, within fucKat 2936.630 kb on + strand, within fucKat 2936.630 kb on + strand, within fucKat 2936.656 kb on + strand, within fucKat 2936.656 kb on + strand, within fucKat 2936.664 kb on - strand, within fucKat 2936.664 kb on - strand, within fucKat 2936.808 kb on - strandat 2936.845 kb on + strandat 2936.845 kb on + strandat 2936.974 kb on - strand, within fucUat 2936.974 kb on - strand, within fucUat 2937.103 kb on + strand, within fucUat 2937.103 kb on + strand, within fucUat 2937.173 kb on + strand, within fucUat 2937.434 kb on - strandat 2937.434 kb on - strandat 2937.439 kb on - strandat 2937.473 kb on - strand, within fucRat 2937.629 kb on + strand, within fucRat 2937.677 kb on - strand, within fucRat 2937.677 kb on - strand, within fucRat 2937.681 kb on + strand, within fucRat 2937.747 kb on - strand, within fucRat 2937.769 kb on + strand, within fucRat 2937.769 kb on + strand, within fucRat 2937.811 kb on - strand, within fucRat 2937.811 kb on - strand, within fucRat 2937.817 kb on + strand, within fucRat 2937.862 kb on + strand, within fucR

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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2,934,514 + fucI b2802 0.51 +1.9
2,934,522 - fucI b2802 0.52 +1.2
2,934,533 - fucI b2802 0.52 +1.8
2,934,536 + fucI b2802 0.52 -1.5
2,934,536 + fucI b2802 0.52 -2.2
2,934,546 - fucI b2802 0.53 +5.7
2,934,546 - fucI b2802 0.53 -1.1
2,934,554 - fucI b2802 0.53 -2.2
2,934,565 - fucI b2802 0.54 -1.7
2,934,565 - fucI b2802 0.54 -1.5
2,934,565 - fucI b2802 0.54 -1.1
2,934,565 - fucI b2802 0.54 +1.3
2,934,622 - fucI b2802 0.57 +1.6
2,934,643 + fucI b2802 0.58 -2.1
2,934,671 + fucI b2802 0.60 +0.2
2,934,692 + fucI b2802 0.61 +0.4
2,934,762 + fucI b2802 0.65 -0.0
2,935,022 - fucI b2802 0.80 +1.0
2,935,044 - fucI b2802 0.81 +0.2
2,935,101 + fucI b2802 0.84 +0.7
2,935,126 - fucI b2802 0.86 +1.9
2,935,153 + fucI b2802 0.87 +0.5
2,935,156 + fucI b2802 0.87 +0.7
2,935,156 + fucI b2802 0.87 -2.8
2,935,186 + fucI b2802 0.89 -1.4
2,935,186 + fucI b2802 0.89 +1.0
2,935,236 + +3.2
2,935,236 + +1.1
2,935,300 + +1.4
2,935,321 + +0.9
2,935,378 + -1.9
2,935,398 - +0.2
2,935,432 - +1.1
2,935,433 + +0.2
2,935,504 - +1.2
2,935,504 - -2.3
2,935,518 + -1.8
2,935,589 - -0.4
2,935,686 + fucK b2803 0.16 -2.4
2,935,817 + fucK b2803 0.25 +0.8
2,935,929 + fucK b2803 0.32 +1.2
2,935,929 + fucK b2803 0.32 +0.1
2,936,145 - fucK b2803 0.47 -4.3
2,936,230 + fucK b2803 0.53 -0.2
2,936,304 + fucK b2803 0.58 -1.8
2,936,330 + fucK b2803 0.60 +1.2
2,936,330 + fucK b2803 0.60 -1.8
2,936,382 - fucK b2803 0.64 +1.4
2,936,382 - fucK b2803 0.64 -0.0
2,936,392 - fucK b2803 0.64 +1.5
2,936,441 + fucK b2803 0.68 +1.7
2,936,538 + fucK b2803 0.74 +1.5
2,936,538 + fucK b2803 0.74 -1.4
2,936,628 + fucK b2803 0.81 +1.2
2,936,630 + fucK b2803 0.81 -0.3
2,936,630 + fucK b2803 0.81 -0.6
2,936,656 + fucK b2803 0.83 -2.8
2,936,656 + fucK b2803 0.83 -1.1
2,936,664 - fucK b2803 0.83 -1.2
2,936,664 - fucK b2803 0.83 -1.9
2,936,808 - -3.3
2,936,845 + +0.1
2,936,845 + -0.7
2,936,974 - fucU b2804 0.15 +1.3
2,936,974 - fucU b2804 0.15 +3.1
2,937,103 + fucU b2804 0.46 +1.4
2,937,103 + fucU b2804 0.46 +1.0
2,937,173 + fucU b2804 0.62 -2.4
2,937,434 - -2.1
2,937,434 - +2.0
2,937,439 - +0.1
2,937,473 - fucR b2805 0.11 +0.7
2,937,629 + fucR b2805 0.33 +3.0
2,937,677 - fucR b2805 0.39 +1.1
2,937,677 - fucR b2805 0.39 -2.6
2,937,681 + fucR b2805 0.40 +0.5
2,937,747 - fucR b2805 0.49 -0.3
2,937,769 + fucR b2805 0.52 +0.9
2,937,769 + fucR b2805 0.52 +3.3
2,937,811 - fucR b2805 0.58 +1.7
2,937,811 - fucR b2805 0.58 -0.4
2,937,817 + fucR b2805 0.58 +0.7
2,937,862 + fucR b2805 0.64 +0.3

Or see this region's nucleotide sequence