Strain Fitness in Escherichia coli BW25113 around b2790
Experiment: octanol 0.08 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | octanol 0.08 vol% |
---|---|---|---|---|---|
remove | |||||
2,919,802 | - | gudP | b2789 | 0.76 | -2.4 |
2,919,849 | - | gudP | b2789 | 0.80 | -1.7 |
2,919,899 | + | gudP | b2789 | 0.83 | -1.4 |
2,919,996 | + | +0.9 | |||
2,920,069 | - | -2.2 | |||
2,920,069 | - | +3.5 | |||
2,920,094 | - | +1.7 | |||
2,920,107 | + | +1.8 | |||
2,920,122 | + | -1.3 | |||
2,920,122 | + | -0.8 | |||
2,920,166 | + | -1.8 | |||
2,920,293 | - | +0.1 | |||
2,920,368 | - | +0.2 | |||
2,920,385 | + | -1.3 | |||
2,920,558 | - | +0.3 | |||
2,920,568 | - | +0.7 | |||
2,920,568 | - | -1.3 | |||
2,920,652 | + | yqcA | b2790 | 0.21 | -0.1 |
2,920,652 | + | yqcA | b2790 | 0.21 | +0.7 |
2,920,816 | + | yqcA | b2790 | 0.58 | +1.0 |
2,920,818 | - | yqcA | b2790 | 0.58 | -2.6 |
2,920,818 | - | yqcA | b2790 | 0.58 | +0.8 |
2,920,831 | + | yqcA | b2790 | 0.61 | +1.8 |
2,920,864 | + | yqcA | b2790 | 0.68 | -0.4 |
2,920,864 | + | yqcA | b2790 | 0.68 | -0.1 |
2,920,917 | + | yqcA | b2790 | 0.80 | +0.2 |
2,920,961 | + | yqcA | b2790 | 0.90 | -1.0 |
2,920,995 | + | +0.3 | |||
2,921,038 | + | -1.2 | |||
2,921,042 | + | +2.5 | |||
2,921,050 | - | +0.1 | |||
2,921,053 | + | -0.2 | |||
2,921,127 | - | yqcB | b2791 | 0.13 | +2.1 |
2,921,209 | - | yqcB | b2791 | 0.24 | -0.5 |
2,921,317 | + | yqcB | b2791 | 0.37 | +1.3 |
2,921,351 | + | yqcB | b2791 | 0.42 | +1.5 |
2,921,504 | + | yqcB | b2791 | 0.61 | +0.6 |
2,921,504 | + | yqcB | b2791 | 0.61 | -1.6 |
2,921,547 | - | yqcB | b2791 | 0.67 | +1.4 |
2,921,631 | - | yqcB | b2791 | 0.78 | -1.3 |
2,921,637 | - | yqcB | b2791 | 0.78 | +0.5 |
2,921,637 | - | yqcB | b2791 | 0.78 | +1.9 |
2,921,710 | - | yqcB | b2791 | 0.88 | +0.1 |
2,921,710 | - | yqcB | b2791 | 0.88 | +1.6 |
2,921,785 | - | +1.7 | |||
2,921,795 | - | -1.1 | |||
2,921,795 | - | -1.8 | |||
2,921,820 | - | -3.7 | |||
2,921,882 | + | yqcC | b2792 | 0.23 | -1.2 |
2,921,980 | - | yqcC | b2792 | 0.53 | -1.7 |
2,921,980 | - | yqcC | b2792 | 0.53 | +2.8 |
2,921,992 | + | yqcC | b2792 | 0.56 | +2.7 |
Or see this region's nucleotide sequence