Strain Fitness in Escherichia coli BW25113 around b2771

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygcQ and ygcR overlap by 4 nucleotidesygcR and ygcS overlap by 23 nucleotidesygcS and ygcU are separated by 93 nucleotides b2769: ygcQ - putative flavoprotein (VIMSS), at 2,892,941 to 2,893,801 ygcQ b2770: ygcR - putative transport protein (VIMSS), at 2,893,798 to 2,894,577 ygcR b2771: ygcS - putative transport protein (VIMSS), at 2,894,555 to 2,895,892 ygcS b4463: ygcU - predicted FAD containing dehydrogenase (NCBI), at 2,895,986 to 2,897,440 ygcU Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2893.566 kb on - strand, within ygcQat 2893.636 kb on - strand, within ygcQat 2893.657 kb on - strand, within ygcQat 2893.717 kb on + strandat 2893.825 kb on + strandat 2893.825 kb on + strandat 2893.883 kb on - strand, within ygcRat 2893.891 kb on - strand, within ygcRat 2893.896 kb on - strand, within ygcRat 2893.959 kb on + strand, within ygcRat 2894.040 kb on + strand, within ygcRat 2894.040 kb on + strand, within ygcRat 2894.141 kb on - strand, within ygcRat 2894.260 kb on - strand, within ygcRat 2894.334 kb on - strand, within ygcRat 2894.334 kb on - strand, within ygcRat 2894.362 kb on + strand, within ygcRat 2894.372 kb on + strand, within ygcRat 2894.372 kb on + strand, within ygcRat 2894.373 kb on - strand, within ygcRat 2894.373 kb on - strand, within ygcRat 2894.500 kb on - strandat 2894.638 kb on + strandat 2894.756 kb on + strand, within ygcSat 2894.873 kb on + strand, within ygcSat 2894.873 kb on + strand, within ygcSat 2894.892 kb on + strand, within ygcSat 2894.999 kb on - strand, within ygcSat 2895.130 kb on - strand, within ygcSat 2895.187 kb on + strand, within ygcSat 2895.187 kb on + strand, within ygcSat 2895.442 kb on - strand, within ygcSat 2895.535 kb on - strand, within ygcSat 2895.559 kb on + strand, within ygcSat 2895.692 kb on - strand, within ygcSat 2895.721 kb on + strand, within ygcSat 2895.770 kb on + strandat 2895.803 kb on + strandat 2895.906 kb on - strandat 2896.019 kb on - strandat 2896.053 kb on + strandat 2896.053 kb on + strandat 2896.084 kb on - strandat 2896.170 kb on + strand, within ygcUat 2896.305 kb on - strand, within ygcUat 2896.357 kb on - strand, within ygcUat 2896.357 kb on - strand, within ygcUat 2896.423 kb on + strand, within ygcUat 2896.423 kb on + strand, within ygcUat 2896.531 kb on - strand, within ygcUat 2896.652 kb on - strand, within ygcUat 2896.732 kb on - strand, within ygcUat 2896.825 kb on - strand, within ygcU

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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2,893,566 - ygcQ b2769 0.73 +0.3
2,893,636 - ygcQ b2769 0.81 -3.1
2,893,657 - ygcQ b2769 0.83 -2.0
2,893,717 + +1.3
2,893,825 + -1.2
2,893,825 + -0.8
2,893,883 - ygcR b2770 0.11 +2.2
2,893,891 - ygcR b2770 0.12 +0.1
2,893,896 - ygcR b2770 0.13 -1.4
2,893,959 + ygcR b2770 0.21 +1.2
2,894,040 + ygcR b2770 0.31 +1.8
2,894,040 + ygcR b2770 0.31 +2.3
2,894,141 - ygcR b2770 0.44 +0.3
2,894,260 - ygcR b2770 0.59 +0.4
2,894,334 - ygcR b2770 0.69 -1.9
2,894,334 - ygcR b2770 0.69 -1.6
2,894,362 + ygcR b2770 0.72 -2.2
2,894,372 + ygcR b2770 0.74 +0.7
2,894,372 + ygcR b2770 0.74 -1.0
2,894,373 - ygcR b2770 0.74 +1.4
2,894,373 - ygcR b2770 0.74 +0.4
2,894,500 - +2.3
2,894,638 + -2.6
2,894,756 + ygcS b2771 0.15 -0.5
2,894,873 + ygcS b2771 0.24 +2.1
2,894,873 + ygcS b2771 0.24 +1.1
2,894,892 + ygcS b2771 0.25 +1.5
2,894,999 - ygcS b2771 0.33 -1.2
2,895,130 - ygcS b2771 0.43 +1.8
2,895,187 + ygcS b2771 0.47 -1.5
2,895,187 + ygcS b2771 0.47 -2.5
2,895,442 - ygcS b2771 0.66 -1.3
2,895,535 - ygcS b2771 0.73 +1.1
2,895,559 + ygcS b2771 0.75 +1.9
2,895,692 - ygcS b2771 0.85 +0.2
2,895,721 + ygcS b2771 0.87 +0.5
2,895,770 + +1.1
2,895,803 + -1.4
2,895,906 - -2.1
2,896,019 - -0.6
2,896,053 + -0.3
2,896,053 + -0.0
2,896,084 - -0.5
2,896,170 + ygcU b4463 0.13 +0.7
2,896,305 - ygcU b4463 0.22 -0.9
2,896,357 - ygcU b4463 0.25 -0.0
2,896,357 - ygcU b4463 0.25 +1.8
2,896,423 + ygcU b4463 0.30 +1.6
2,896,423 + ygcU b4463 0.30 +1.1
2,896,531 - ygcU b4463 0.37 -0.9
2,896,652 - ygcU b4463 0.46 +0.6
2,896,732 - ygcU b4463 0.51 +1.1
2,896,825 - ygcU b4463 0.58 +0.5

Or see this region's nucleotide sequence