Strain Fitness in Escherichia coli BW25113 around b2769

Experiment: octanol 0.08 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygcN and ygcO overlap by 10 nucleotidesygcO and ygcP are separated by 16 nucleotidesygcP and ygcQ are separated by 147 nucleotidesygcQ and ygcR overlap by 4 nucleotidesygcR and ygcS overlap by 23 nucleotides b2766: ygcN - orf, hypothetical protein (VIMSS), at 2,890,679 to 2,891,950 ygcN b2767: ygcO - orf, hypothetical protein (VIMSS), at 2,891,941 to 2,892,201 ygcO b2768: ygcP - predicted anti-terminator regulatory protein (NCBI), at 2,892,218 to 2,892,793 ygcP b2769: ygcQ - putative flavoprotein (VIMSS), at 2,892,941 to 2,893,801 ygcQ b2770: ygcR - putative transport protein (VIMSS), at 2,893,798 to 2,894,577 ygcR b2771: ygcS - putative transport protein (VIMSS), at 2,894,555 to 2,895,892 ygcS Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2891.943 kb on - strandat 2891.959 kb on + strandat 2892.096 kb on + strand, within ygcOat 2892.100 kb on + strand, within ygcOat 2892.100 kb on + strand, within ygcOat 2892.106 kb on + strand, within ygcOat 2892.108 kb on + strand, within ygcOat 2892.110 kb on - strand, within ygcOat 2892.110 kb on - strand, within ygcOat 2892.127 kb on + strand, within ygcOat 2892.132 kb on - strand, within ygcOat 2892.143 kb on + strand, within ygcOat 2892.143 kb on + strand, within ygcOat 2892.151 kb on - strand, within ygcOat 2892.151 kb on - strand, within ygcOat 2892.151 kb on - strand, within ygcOat 2892.151 kb on - strand, within ygcOat 2892.192 kb on - strandat 2892.224 kb on + strandat 2892.230 kb on + strandat 2892.230 kb on + strandat 2892.279 kb on - strand, within ygcPat 2892.288 kb on + strand, within ygcPat 2892.342 kb on - strand, within ygcPat 2892.476 kb on + strand, within ygcPat 2892.601 kb on + strand, within ygcPat 2892.616 kb on - strand, within ygcPat 2892.699 kb on + strand, within ygcPat 2892.753 kb on - strandat 2892.758 kb on + strandat 2892.758 kb on + strandat 2892.854 kb on - strandat 2892.888 kb on - strandat 2892.888 kb on - strandat 2892.914 kb on - strandat 2892.914 kb on - strandat 2892.914 kb on - strandat 2892.939 kb on + strandat 2892.973 kb on - strandat 2892.993 kb on - strandat 2893.003 kb on - strandat 2893.184 kb on + strand, within ygcQat 2893.195 kb on - strand, within ygcQat 2893.279 kb on - strand, within ygcQat 2893.284 kb on - strand, within ygcQat 2893.368 kb on - strand, within ygcQat 2893.552 kb on + strand, within ygcQat 2893.566 kb on - strand, within ygcQat 2893.636 kb on - strand, within ygcQat 2893.657 kb on - strand, within ygcQat 2893.717 kb on + strandat 2893.825 kb on + strandat 2893.825 kb on + strandat 2893.883 kb on - strand, within ygcRat 2893.891 kb on - strand, within ygcRat 2893.896 kb on - strand, within ygcRat 2893.959 kb on + strand, within ygcRat 2894.040 kb on + strand, within ygcRat 2894.040 kb on + strand, within ygcRat 2894.141 kb on - strand, within ygcRat 2894.260 kb on - strand, within ygcRat 2894.334 kb on - strand, within ygcRat 2894.334 kb on - strand, within ygcRat 2894.362 kb on + strand, within ygcRat 2894.372 kb on + strand, within ygcRat 2894.372 kb on + strand, within ygcRat 2894.373 kb on - strand, within ygcRat 2894.373 kb on - strand, within ygcRat 2894.500 kb on - strandat 2894.638 kb on + strandat 2894.756 kb on + strand, within ygcS

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Per-strain Table

Position Strand Gene LocusTag Fraction octanol 0.08 vol%
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2,891,943 - -2.1
2,891,959 + -1.4
2,892,096 + ygcO b2767 0.59 -0.3
2,892,100 + ygcO b2767 0.61 -1.8
2,892,100 + ygcO b2767 0.61 -0.5
2,892,106 + ygcO b2767 0.63 -1.2
2,892,108 + ygcO b2767 0.64 +0.8
2,892,110 - ygcO b2767 0.65 +0.2
2,892,110 - ygcO b2767 0.65 -2.9
2,892,127 + ygcO b2767 0.71 +0.2
2,892,132 - ygcO b2767 0.73 +0.9
2,892,143 + ygcO b2767 0.77 -1.9
2,892,143 + ygcO b2767 0.77 +0.8
2,892,151 - ygcO b2767 0.80 +1.4
2,892,151 - ygcO b2767 0.80 +1.7
2,892,151 - ygcO b2767 0.80 +0.9
2,892,151 - ygcO b2767 0.80 +0.3
2,892,192 - -0.9
2,892,224 + -1.8
2,892,230 + +1.3
2,892,230 + +2.0
2,892,279 - ygcP b2768 0.11 +1.9
2,892,288 + ygcP b2768 0.12 -2.2
2,892,342 - ygcP b2768 0.22 -2.1
2,892,476 + ygcP b2768 0.45 +2.3
2,892,601 + ygcP b2768 0.66 +0.5
2,892,616 - ygcP b2768 0.69 -3.3
2,892,699 + ygcP b2768 0.84 +0.6
2,892,753 - +1.0
2,892,758 + +3.2
2,892,758 + +2.2
2,892,854 - +2.7
2,892,888 - +0.3
2,892,888 - -0.1
2,892,914 - -1.6
2,892,914 - +1.6
2,892,914 - +0.3
2,892,939 + +1.2
2,892,973 - -1.6
2,892,993 - -2.4
2,893,003 - +1.9
2,893,184 + ygcQ b2769 0.28 +0.5
2,893,195 - ygcQ b2769 0.30 -3.3
2,893,279 - ygcQ b2769 0.39 -1.3
2,893,284 - ygcQ b2769 0.40 -0.1
2,893,368 - ygcQ b2769 0.50 +0.6
2,893,552 + ygcQ b2769 0.71 -1.8
2,893,566 - ygcQ b2769 0.73 +0.3
2,893,636 - ygcQ b2769 0.81 -3.1
2,893,657 - ygcQ b2769 0.83 -2.0
2,893,717 + +1.3
2,893,825 + -1.2
2,893,825 + -0.8
2,893,883 - ygcR b2770 0.11 +2.2
2,893,891 - ygcR b2770 0.12 +0.1
2,893,896 - ygcR b2770 0.13 -1.4
2,893,959 + ygcR b2770 0.21 +1.2
2,894,040 + ygcR b2770 0.31 +1.8
2,894,040 + ygcR b2770 0.31 +2.3
2,894,141 - ygcR b2770 0.44 +0.3
2,894,260 - ygcR b2770 0.59 +0.4
2,894,334 - ygcR b2770 0.69 -1.9
2,894,334 - ygcR b2770 0.69 -1.6
2,894,362 + ygcR b2770 0.72 -2.2
2,894,372 + ygcR b2770 0.74 +0.7
2,894,372 + ygcR b2770 0.74 -1.0
2,894,373 - ygcR b2770 0.74 +1.4
2,894,373 - ygcR b2770 0.74 +0.4
2,894,500 - +2.3
2,894,638 + -2.6
2,894,756 + ygcS b2771 0.15 -0.5

Or see this region's nucleotide sequence